BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01980.1
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486871 jgi|Araly1|486871|fgenesh2_kg.6__5__AT5G01980.1 2615 0.0
> Ahg486871 jgi|Araly1|486871|fgenesh2_kg.6__5__AT5G01980.1
Length=1824
Score = 2615 bits (1416), Expect = 0.0
Identities = 1710/1845 (93%), Gaps = 48/1845 (3%)
Strand=Plus/Plus
Query 36 CCCCCATCCGTCGTCGTTGA-CCCCTTTCCGCCATAAAATCCCAAC-AC-----CTG--- 85
|||||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 1 CCCCCATCCGTCGTCGTTGACCCCCTTTCCGCCATAAAATCCCAACGCCTGTTTCTGCCA 60
Query 86 TTTTCTTGCATCGAAACCATCCCCTTGCCTTGTTTGCTTGGACAGATGACTCCTTGCTAG 145
||||||||||||||||| || || |||||||||||||||||||||||||||| ||||
Sbjct 61 TTTTCTTGCATCGAAACTAT--CC---CCTTGTTTGCTTGGACAGATGACTCCTTCCTAG 115
Query 146 TTTTTTGAAGATCCGGCCGTATCTCTTCGACCTCAAAGCTGCCGCCTTTGGATCCGATGG 205
|||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 116 TTTTTTGAAGATCCGGGCGTATTTCTTCGACCTCAAAGTTGCTGCCTTTGGATCCGATGG 175
Query 206 AATCACAAGGACCTTCTAATGG-TCATCCCATGGATATCAGCAGCAATTCAATCCCATCG 264
|||||| ||| || || |||| |||| || ||||||||||||||||||||
Sbjct 176 AATCAC---CACC-TC--CGGGACCATCTAATGGGGAT-AGCAGCAATTCAATCCCATCT 228
Query 265 TCTGCCTGTAATCTGTGCGGAAGAGTCGTTCAATCTGCTTCCGATGATCTTGAAATCTTC 324
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 229 TCGGCCTGTAATCTGTGCGGAAGAGTCGTCCAATCTGCTTCCGATGATCTTGAAATCTTC 288
Query 325 AGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACTCCCGCGCCTCCC 384
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 289 AGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACCCCCGCACCTCCC 348
Query 385 TTGGCTCGGCGGCAGACAATTaggaggaggaggatgaggaggaggagAAGAACAACTAGG 444
||||||||| ||||||||||||| |||||||||||||||||||||| ||| | | ||||
Sbjct 349 TTGGCTCGGAGGCAGACAATTAGAAGGAGGAGGATGAGGAGGAGGACAAGGAGGAGTAGG 408
Query 445 CACGACAGCTCTGAGTCTGTCGGTGTCGGTGATCTTTCCTCCCAACAATTCACACACTTG 504
|||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||
Sbjct 409 CACGACAGCTCTGA----GTC--TGTCGGTGATCTTTCCACCCAACAGTTCACACACTTG 462
Query 505 ATAAGCATTGCAAGACAAAGCCTTTCAACGGTTCAAGCTAGTGAGGATCTACGTGATGA- 563
|||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 463 ATAAGCATGGCAAGACAAAGCCTTTCAACGGTTCATGCTAGTGAGGATCAACGTGGTGAC 522
Query 564 C--CTGCGAACTAGCTCCCATACCACTCCAAGCGGCTCGACAAGATGGAGACTCTTCTCA 621
| | ||| ||||| |||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 523 CAGCAGCGCACTAGTTCCCATACCACTCCAAGCGGTTCTACAAGATGGAGAATCTTCTCA 582
Query 622 GAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGCTTTAGC 681
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 583 GAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGTTTTAGC 642
Query 682 CTCTACAGATTTCCCCATGCTGATAACGATACCATTTCTTTTAGTGCTTACGGTGGAGAG 741
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 643 CTCTACAGATTTCCCCATGCTGATAACGATGCCATTTCTTTTAGTGCTTACGGTGGAGAA 702
Query 742 TCTGATGCTTCCACGGACAGGCATG----CC--GAT------ATCTTTGTTCAACCAGAT 789
||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 703 TCTGATGCTTCCACGGACAGGCATGCTTTCCTGGATGCGGAAATCTTTGTTCAACCAGAC 762
Query 790 GACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCGCGCTGGTCTTAACCAG 849
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 763 GACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCATGCTGGTCTTAACCAG 822
Query 850 TGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCTTCTGGGGTTGCA 909
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 823 TGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCATCTGGGGTTGCT 882
Query 910 GGAACACGCTATAGAAACTATTTGGCAAGTCCAAGTGAGAGCTACAGCTCCATGACTCGG 969
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 883 GGAACACGGTATAGAAACTATTTGGCTAGTCCAAGTGAGAGCTACAGCTCCATGACTCGG 942
Query 970 TTTGATTCACCTGAGTTAGAGAGAAGCTTTCGTCAAAGAATTATAGAGAGGAGGCATTCG 1029
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 943 TTTGATTCACCCGAGTTAGAGAGAGGCTTTCGTCAAAGAATTTTAGAGAGGAGGCAGGGG 1002
Query 1030 TTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGACTTCTCCCCCTATGCTGCAAAT 1089
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1003 TTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGAGTTCTCTCCCTATGCTGCAAAT 1062
Query 1090 GTTGGGGATTATCTTGATGAGAGAGGCTTTGATGAACTGCTTGAGCAACTTGCTGAGTCT 1149
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1063 GTTGCGGATTATCTTGATGAGAGAGGCTTTGAGGAACTGCTTGAGCAACTTGCTGAGTCT 1122
Query 1150 GACAATTCAAGAAGAGGTGCACCACCTGCATCTGTCTCATGCGTCAGGAATCTTCCAAGG 1209
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1123 GACAATTCAAGAAGAGGTGCACCACCTGCATCTGTGTCATGCGTCGGGAATCTTCCAAGG 1182
Query 1210 GTTATCATTGCAGAGGAGCATGTAATGAAGGGCCTAGTTTGTGCGATCTGCAAGGAGCTT 1269
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1183 GTTATCATTGGAGAGGAGCATGTAATGAAGGGCTTAGTTTGTGCAATCTGCAAGGAGCTT 1242
Query 1270 TTCTCCCTCCGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGT 1329
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TTCACCCTCAGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGT 1302
Query 1330 ATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCGACA 1389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1303 ATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCAACA 1362
Query 1390 GATGATAAAGATTACGAGGAGGGAAAGCGGAATGTGCTGGATGTGAGCGAGGATAGCTCC 1449
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1363 GATGATAAAGATTACGAGGCCGGAAAGCATAATGTGCTGGATGTGAGCGAGGATAGCTCC 1422
Query 1450 TCCTC-TGATGATGGTACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGA 1508
|| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TC-TGGTGACGATGGCACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGA 1481
Query 1509 GTCTGGTGTGAGCAGAGTCAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGT 1568
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CTCTGGTGTGAGCAGAGTTAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGT 1541
Query 1569 GAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAGCCCACACAGGAGGGGTATAGC 1628
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1542 GAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAACCAACAGAGGAGGGGTATAGC 1601
Query 1629 AATCTCTCATAGCCAAAGGGAGAACAGAACCAGAAGATGGCTGCCGTTTTTCTGACTGAT 1688
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1602 AATCTCTCATAGCCAAAGGGGGAATAGAACCAGAAGATGGCTGCCGTTTTTCTGACTGAT 1661
Query 1689 GCCCAGATCCGTAGGTGCCTCCAGAATCTGTAtttttttAAGACCCTTAAAAGATACTTG 1748
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1662 GCCCAGATCCGTAGGTGCCTCCAGAATCTGTATTTTTTCA-GACCCTTAAAAGATACTTG 1720
Query 1749 AGTTTCGTCTGCTGTTTATCGACTTGGTACTGTTTCCACACATTAGTTTTAATTGACGTT 1808
|||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1721 AGTTTCATCTGCTGTTTATCGACTTG-TACTGTTTCCACACGTTAGTTTTGATTGACGTT 1779
Query 1809 TAACTAAAGTTGTGCTGTTTGTCGCGTGTTTCAAATAATATTCTT 1853
|||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1780 TAACTAAAGTTGTGCTGTTTGTCGTGTGTTGCAAATAATATTCTT 1824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5