BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01990.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486870 jgi|Araly1|486870|fgenesh2_kg.6__4__AT5G01990.1 2471 0.0
> Ahg486870 jgi|Araly1|486870|fgenesh2_kg.6__4__AT5G01990.1
Length=1598
Score = 2471 bits (1338), Expect = 0.0
Identities = 1529/1618 (94%), Gaps = 26/1618 (2%)
Strand=Plus/Plus
Query 86 aaaaaaa-aaGGTATGTGGGGAAGTTTTGAAGGGGCTTTTGGGCTTAGAAAAGGAAAGAA 144
||||||| || || |||| ||||| || ||| |||||||||||||||||||||||||| |
Sbjct 1 AAAAAAAGAA-GTGTGTGTGGAAG-TTGGAACGGGCTTTTGGGCTTAGAAAAGGAAAGGA 58
Query 145 GTAAAGGAAGAAGCGGCGCACGTGGCAGGCAGTCACGAGAGTCACGAGAGATCGAGAGA- 203
|||||| |||||||||||||||||||||||| |||||||| |||||||||| | |||
Sbjct 59 GTAAAGAAAGAAGCGGCGCACGTGGCAGGCAATCACGAGAATCACGAGAGAGAAACAGAG 118
Query 204 AG-TCTTTGATTCTCTTCTCTCATCAAATCAAAATATCATCTCAGAGACTCCGATTCTCT 262
|| ||| | |||| | |||| ||||||| | |||| |||||||||||||||||||
Sbjct 119 AGATCTCT--CTCTC-T-TCTC-TCAAATC---A-ATCA--TCAGAGACTCCGATTCTCT 167
Query 263 CTGTTTCTCCTCCACTTTTCAACCCAAGTCCACCCTCAAAATTCTCAGAATGATTGCTCG 322
|| || |||||||| || |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 168 GTG-TT-TCCTCCACATTCCAACCCAAGTCCACCCTCAAAATTGTCAGAATGATTGCCCG 225
Query 323 GATCCTTGCCGCCTTAGCCGATTCCATGGAGATGCCGGTGGCTGCCGGTGGTGGATCAGT 382
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 226 GATCCTTGCCGCCTTAGCCGATTCCATGGATATTCCGGTGGCTGCC---GGTGGATCAGT 282
Query 383 GCTCGGTACCATCAAAATCGCTGTGATGCCAATTGCAAAGGTATTCACCATGTGCTTCTT 442
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 283 GCTGGGTACCATCAAAATCGCTGTGATGCCAATTGCCAAGGTTTTCACCATGTGCTTCTT 342
Query 443 GGGTCTTCTCATGGCCTCCAAGTACGTTAACATCTTGCCTCCCTCTGGCCGCAAACTCTT 502
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 343 GGGTCTTCTCATGGCCTCCAAGCACGTTAACATCTTGCCTCCCTCCGGCCGCAAACTCTT 402
Query 503 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCCTGCTTGATCTTTTCCCAGCTCGGACAAGC 562
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 403 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCGTGCTTGATCTTTTCCCAGCTTGGACAAGC 462
Query 563 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTTAACGTCGTTCTTGGCAC 622
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 463 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTGAACGTCGTTCTTGGCAC 522
Query 623 CATCTCTGGCTCCATAATCGGTTTCATCGTTGCTTCCATCGTTCGTCCGCCTTACCCTTA 682
|||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 523 CATCTCTGGCTCGACAATCGGTTTCATCGTTGCTTCCATCATTCGTCCCCCTTACCCTTT 582
Query 683 CTTCAAGTTTACAATCATACAAATTGGAGTTGGCAACATTGGCAATGTGCCTCTTGTTTT 742
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 583 TTTCAAGTTTACAATCATACAAATTGGAGTTGGCAATATTGGCAATGTGCCTCTTGTTTT 642
Query 743 ACTT-GCGGCTCTTTGTAGGGACACTTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 801
| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 643 A-TTAGCGGCTCTATGTAGGGACACCTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 701
Query 802 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 761
Query 862 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 821
Query 922 CTTT-AAAAACCCTTCCAGTAGATGCTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 980
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 822 CTTTGAAAAACC-TTCCAGTAGATACTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 880
Query 981 TTTCCCAAGGACTTTTCGCCGACTCAAGATCTTTTGCCTGTACAGAGCACCGAACCTAGG 1040
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 881 TTTCCCAAGGACTTTTCGCCGATTCAAGATCTTTTACCTGTACAGAGCACCGAACCTAGA 940
Query 1041 GGAAGAGGGGTTTCAAGGAAAGGCAAGATTGCACAGATCTTTGTTTTCCTCTATGAGAAG 1100
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 941 GGAAGAGTGGTTTCAAGGAAAGGCAAGATTACACAGATCTTTGTTTTCCTCTATGAGAAG 1000
Query 1101 CTGAAACTGAAGCAAATTGTCCAGCCTGCAATTGTTGCTTCGATCCTTGCCATGATACTC 1160
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1001 TTGAAACTGAAGCAAATTGTCCAGCCTGCAATAGTTGCTTCGATCCTTGCCATGATACTC 1060
Query 1161 GGAGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1220
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GGTGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1120
Query 1221 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTGGGG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTGGGG 1180
Query 1281 GGAAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACAGCAGCTATT 1340
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1181 GGGAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACGGCAGCTATT 1240
Query 1341 ATAATTGGACGGTTGGTGTTAGTGCCACCAGTAGGACTAGGAATCGTGACAGTAGCAGAC 1400
||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 1241 ATATTTGGACGGTTGGTGTTGGTGCCACCAGTAGGACTAGGAATAGTGACACTAGCAGAC 1300
Query 1401 AAACTTGGGTTCCTTCCTGCTGATGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1460
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1301 AAACTTGGGTTCCTTCCTGCTGACGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1360
Query 1461 ACAATGCCTACATCAGTGCTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAA 1520
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 ACAATGCCTACATCAGTACTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAG 1420
Query 1521 TCAGCTGCTGTGCTCTTCTGGGTCCACATTTTCGCCATCTTCTCAATGGCTGGATGGATG 1580
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1421 TCAGCTGCTGTGCTATTCTGGGTCCACATTTTCTCCATCTTCTCAATGGCTGGATGGATA 1480
Query 1581 GTACTCTACATTAACATACTCTTCTGAATTCT-CTTCTTATTGACACATTCATCTGCTAC 1639
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1481 GTACTGTACATCAACATACTCTTCTGAATTCTTCTTCTTATTGACACATTCATCTGCTAC 1540
Query 1640 TATACAATACTTCTGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1697
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TATACAATACGTCGGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5