BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02180.1 Length=2007 Score E Sequences producing significant alignments: (Bits) Value Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 2815 0.0 > Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 Length=1937 Score = 2815 bits (1524), Expect = 0.0 Identities = 1822/1958 (93%), Gaps = 51/1958 (3%) Strand=Plus/Plus Query 1 AAATAGTTTTCTCTCCATTGATATGTTTCCGTATATAGAAGAAATCTCTTTGACTCGCCG 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 AAATAGTTTTCTCTCCATTGATATGTTTCCATATATAGAAGAAATCTCTTTGACTCGCCG 60 Query 61 GAAAACAAAACCCCGTTGTTCTCCGTCTAtctctccctctctctctctGCACATTTCTTC 120 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAAACAAAATCCCGTTGTTCTCCGTCTATCTCTCCCTCTCTCTCTCTGCACATTTCTTG 120 Query 121 TACCTTTCTTTGAGATTTGAGAAAACAGAGGAAGAAGATGAAACTCGACGAAGAATTCTT 180 | | ||||||||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct 121 TGCGTTTCTTTGAGATTTGAGAAAACATAGGAGGACGATGAAACTCGACGAAGAATTCTT 180 Query 181 ACACGACAGAGACCATTCGTTTCTGACAGATGACGAGGAAAATCAAGCAGCACTTGCTTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 ACACGACAGAGACCATTCGTTTCTGACAGATGACGAGGAAAATCAAGCAGAACTTGCTTG 240 Query 241 TTCCGACGATGAACACGACGGAGACGACGACGGTCGGAGAGGCGGAGAAAATTCAGATTC 300 ||| ||||||| | || || | |||| ||| ||||| ||||| ||||||||||| Sbjct 241 TTCAGACGATG-A-AC-AC----A--ACGATGGTAAGAGAGACGGAGCGAATTCAGATTC 291 Query 301 CTCCTCTCCGTTATCACGAGACCGTTCTGATAACAATCTCTCGGATGTCTCAAACCCTCC 360 ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| Sbjct 292 CTCCTCTCCGTTATCTCGAGACCGTTCTGATAACAATCTCTCTGATGTCTCGAATCCTCC 351 Query 361 ATGGCCACAAAGCTATCGACAATCAATGGATTTGTTGACCGGAATGACTCCACCTTCGGT 420 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 352 ATGGCCACAAAGCTATCGACAATCAATGGATCTGTTGACCGGAATGACTCCACCTTCGGT 411 Query 421 GAGTTTCATGCCTCAAAGCAGTTCCCGGAGATTAGCCTCTTCCTTCCAGAAGAAGCAACA 480 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 412 GAGTTTCATGCCTCGAAGCAGTTCCCGGAGATTAGCCTCTTCCTTCCATAAGAAGCAACA 471 Query 481 ATCTTCGTTTTG-CGATTCGTTGTCTTCTTCCTCAAGCAAACCCCTTCTCTCTCAACCAG 539 |||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 472 ATCTTC-TTTTGTCGATTCGTTTTCTTCTTCCTCAAGCAAACCACTTCTCTCTCAAACAG 530 Query 540 -TTCCTGACAAAGAAGAAACGATTTTACCCGTCAACCCTCAATCTCAGCTCAAGCTCTCC 598 |||| |||||||||||||||| || | | ||||||||||||||||||||||| Sbjct 531 TTTCC-GACAAAGAAGAAACGA---TA----T-TA-CCTCAATCTCAGCTCAAGCTCTCT 580 Query 599 GTCACCGATCTTCCATTACCGGAACCTAACCTCTGCTCCTTCTCTCAATCTGTTCTCAAT 658 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 581 GTCACCGATCTTCCATTACCGGAACCTAACCTCTGCTCCTTCTCTCAATCCGTCCTCAAC 640 Query 659 GGAACCAATGTACTGTGTGGATTAGGGTTAATAACAATGCCTTACGCTATTAAAGAAAGT 718 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 641 GGAACCAATGTACTGTGTGGATTAGGGTTAATAACAATGCCTTATGCTATAAAAGAAAGT 700 Query 719 GGATGGCTTGGTCTGCCCATACTCTTGTTCTTCGGAGTCATAACTTGCTACACAGGTGTT 778 |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 701 GGATGGCTTGGTTTGGTAATACTCTTGTTCTTCGGAGTCATCACTTGCTACACAGGTGTT 760 Query 779 CTCATGAAAAGATGTCTAGAAAGTTCCCCTGGTATTCAAACTTACCCCGATATCGGTCAA 838 |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 761 CTCATGAAGAGATGTCTAGAAAGTTCTCCTGGTCTTCAAACTTACCCCGATATCGGTCAA 820 Query 839 GCCGCCTTTGGAATCACCGGTCGCTTCATCATCTCTATTCTTCTATACGTGGAGTTGTAC 898 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 821 GCCGCCTTTGGAATCACCGGTCGCTTCATCATATCCATTCTTCTATACGTGGAGTTGTAC 880 Query 899 GCAGCTTGTGTGGAATACATAATCATGATGAGCGATAACTTATCAGGGCTATTCCCAAAC 958 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 881 GCAGCTTGTGTGGAATACATAATCATGATGAGCGACAACTTATCAGGACTATTCCCAAAC 940 Query 959 GTTTCATTGAGCATTGCTTCAGGGATATCTTTAGATTCTCCTCAGATCTTTGCAATCTTA 1018 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 941 GTTTCACTGAGCATTGCTTCAGGGATATCTCTAGATTCTCCTCAGATCTTTGCAATCTTA 1000 Query 1019 ACCACTCTTCTTGTTCTTCCAACTGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTT 1078 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1001 ACCACTCTTCTTGTTCTTCCAACAGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTT 1060 Query 1079 TCAGTTGGAGGAGTCTTGGCGTCAATCTTACTCGGTATCTGCCTCTTCTGGGTCGGTGCA 1138 |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1061 TCAGTTGGAGGAGTCTTGGCGTCAATCTTACTCGGTCTCTGCCTTTTCTGGGTCGGTTTG 1120 Query 1139 GTCGATGGAATAGGGTTTCATGCAACAGGACGAGTTTTCGAT-TTAAGTAACTTACCTGT 1197 || |||||||||||||| |||||||||||||||||||||||| || |||||||||||||| Sbjct 1121 GTTGATGGAATAGGGTTCCATGCAACAGGACGAGTTTTCGATCTT-AGTAACTTACCTGT 1179 Query 1198 CACTATAGGGATTTTTGGATTTGGTTACTCGGGTCATTCGGTTTTTCCCAATATCTATTC 1257 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 CACTATAGGGATTTTCGGGTTTGGTTACTCGGGTCATTCGGTTTTTCCCAATATCTATTC 1239 Query 1258 TTCAATGAAAGATCCTTCAAGGTTTCCTCTTGTCTTAGTTATCTGCTTTAGTTTCTGCAC 1317 ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1240 TTCCATGAAGGATCCTTCAAGGTTTCCTCTTGTCTTAGTCATCTGCTTTAGTTTCTGCAC 1299 Query 1318 GGTCTTGTACATAGCTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGCAGTGGAATC 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1300 GGTCTTGTACATAGCTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGCAGTCGAATC 1359 Query 1378 ACAGTTCACATTGAACATGCCTAAGCACTTCTTTCCATCTAAAGTCGCGGTCTGGACAGC 1437 ||| |||||||| |||||||| || || |||||||||||||||||||| ||||||||||| Sbjct 1360 ACAATTCACATTAAACATGCCAAAACAATTCTTTCCATCTAAAGTCGCAGTCTGGACAGC 1419 Query 1438 GGTCATTACACCGATGACCAAATACGCTTTAACAATCACCCCAATAGTTATGAGTCTCGA 1497 |||||| ||||| ||||| |||||||| ||||||| ||||||||| |||||||||||||| Sbjct 1420 GGTCATCACACCAATGACAAAATACGCGTTAACAACCACCCCAATCGTTATGAGTCTCGA 1479 Query 1498 AGAACTCATTCCAACAGCTAAGATGAGATCACGTGGTGTATCGATATTATTTAGAACAAT 1557 |||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| Sbjct 1480 AGAACTCATTCCAACAGCTAAGATGAAATCACATGGTGTATCGATATTATTCAGAACAGC 1539 Query 1558 GCTAGTTACCTCTACTTTGGTGGTTGCTCTTTCAGTTCCTTTCTTCGCGATCGTGGCAGC 1617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1540 CCTAGTTACCTCTACTTTGGTGGTTGCTCTTTCAGTTCCTTTCTTCGCGATCGTGGCAGC 1599 Query 1618 ACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCTATGTTATCT 1677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1600 ACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCTATGTTATCT 1659 Query 1678 CAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATTCATTATAGT 1737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1660 CAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATTCATTATACT 1719 Query 1738 CTTCGGGGTGGTTAGTGGTTGTTGTGGTACTTACTCGGCTATCTCAAGATTAGCCAACCA 1797 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 CTTCGGGTTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTCAAGATTAGCCAACCA 1779 Query 1798 AATGACA-GATTAACTGAAATTTTCGACGGCGATTTAAAATTAGGTGTGTTGTGTTCTAA 1856 ||||||| ||||||||||||||| | ||| | ||||||||||||||||| Sbjct 1780 AATGACATGATTAACTGAAATTT---A-----ATT-A------GGTGTGTTGTGTTCTAA 1824 Query 1857 T----GTTTATTATATTATCTAGTTTTTATTCAGTTTTGGTTCAGATTTCT-TTTAATTG 1911 | |||||| |||||||||||||||| |||||||||||||||||||| | |||| || Sbjct 1825 TTAATGTTTAT-ATATTATCTAGTTTTTCTTCAGTTTTGGTTCAGATTT-TGTTTA-TT- 1880 Query 1912 TTTTAGGAAACAAGCAGAGATAAAACCACATATACTTC 1949 || || |||||||| |||||||||||||||||||||| Sbjct 1881 TT--AGAAAACAAGCCGAGATAAAACCACATATACTTC 1916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75456775345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5