BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02240.1 Length=1014 Score E Sequences producing significant alignments: (Bits) Value Ahg939601 jgi|Araly1|939601|scaffold_600145.1 1282 0.0 Ahg349525 jgi|Araly1|349525|fgenesh1_pg.C_scaffold_6000118 202 4e-51 > Ahg939601 jgi|Araly1|939601|scaffold_600145.1 Length=802 Score = 1282 bits (694), Expect = 0.0 Identities = 759/791 (96%), Gaps = 2/791 (0%) Strand=Plus/Plus Query 69 AAGCTTCTACAATGGCGAATCTTCCCACCGTTCTCGTCACCGGCGCTAGTGGCA-GAACA 127 |||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 10 AAGCTTCTTCAATGGCGAATCTTCCCACCGTTCTCGTTACCGGCGCTAGTGG-ACGAACA 68 Query 128 GGCCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 187 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GGTCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 128 Query 188 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTTTTCATTGGGGAT 247 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 129 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTCTTCATTGGGGAT 188 Query 248 ATAACAGATGCTGATAGCATTAACCCTGCGTTTCAAGGAATCGATGCGCTTGTGATTCTC 307 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 189 ATAACAGATGCTGATAGCATTAATCCTGCGTTTGAAGGGATCGATGCGCTTGTGATTCTC 248 Query 308 ACTAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 367 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 ACGAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 308 Query 368 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTGGATTGGACAGAAGAATCAA 427 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 309 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTTTATTGGACAGAAGAATCAA 368 Query 428 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTGGTCGGGTCAATGGGTGGT 487 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 369 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTAGTCGGGTCAATGGGTGGT 428 Query 488 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 488 Query 548 AAGGCTGAACAGTACCTTGCTGATTCTGGAACTCCTTACACAATTATCAGAGCTGGAGGA 607 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 489 AAGGCTGAACAGTATCTTGCTGATTCTGGAACTCCTTACACAATAATCAGAGCTGGAGGA 548 Query 608 CTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGACGATGAGCTACTT 667 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 549 CTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAGACGATGAGCTACTT 608 Query 668 CAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGCATTCAGGCATTG 727 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 609 CAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGCATCCAGGCATTG 668 Query 728 CTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 787 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 CTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 728 Query 788 ACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAAATCATT 847 | || || |||||||| ||||||||||||||||||||||| ||||| || |||||| || Sbjct 729 TCTCCGACTAAAGACTTTAAGGCTCTCTTCTCTCAAGTCACTTCTCGATTCTAAATCTTT 788 Query 848 ATCTTTGTTGC 858 ||||||| ||| Sbjct 789 ATCTTTGCTGC 799 > Ahg349525 jgi|Araly1|349525|fgenesh1_pg.C_scaffold_6000118 Length=600 Score = 202 bits (109), Expect = 4e-51 Identities = 121/127 (95%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 596 AGAGCTGGAGGACTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGAC 655 ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || Sbjct 262 AGAGCTGGAGGACTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAAAC 321 Query 656 GATGAGCTACTTCAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGC 715 ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 322 GATGAGCTACTTCAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGC 381 Query 716 ATTCAGG 722 ||||||| Sbjct 382 ATTCAGG 388 Score = 183 bits (99), Expect = 2e-45 Identities = 113/120 (94%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 722 GCATTGCTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 781 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCATTGCTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 540 Query 782 ACCAGTACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAA 841 |||||| | || || |||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 541 ACCAGTTCTCCGACTAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACGTCTCGTTTATAA 600 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37703564913 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5