BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02270.2 Length=1223 Score E Sequences producing significant alignments: (Bits) Value Ahg349529 jgi|Araly1|349529|fgenesh1_pg.C_scaffold_6000122 876 0.0 > Ahg349529 jgi|Araly1|349529|fgenesh1_pg.C_scaffold_6000122 Length=987 Score = 876 bits (474), Expect = 0.0 Identities = 529/556 (95%), Gaps = 2/556 (0%) Strand=Plus/Plus Query 580 GTGTTGGATATCGACATCTCATGGAGACTGCACAAGGTATCCGATGGCCAAAGAAGACGT 639 |||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||| Sbjct 433 GTGTTGGATATCGATATCTCATGGAGATTGCACAAGGTATCGGATGGCCAGAGAAGACGT 492 Query 640 GTACAGATCTGTATGGGACTCCTGAAGCCATTCAAGGTTCTCCTTTTGGATGAAATAACT 699 || ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 493 GTTCAGATTTGTATGGGACTCCTCAAGCCATTTAAGGTTCTCCTTTTGGATGAAATAACT 552 Query 700 GTTGATCTTGACGTTCTCGCTAGAGCAGACCTTTTGAAGTTTCTGAGAAAGGAATGTGAA 759 |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| Sbjct 553 GTTGATCTTGACGTTCTCGCAAGAGCAGACCTTCTGAAATTTCTGAGAAAGGAATGCGAA 612 Query 760 GAACGAGGAGCAACCATAATCTACGCTACTCATATATTCGATGGCT-TAGAGGACTGGCC 818 |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| ||||| Sbjct 613 GAACGAGGAGCAACCATAATATACGCTACTCATATATTTGATGG-TCTAGAGGATTGGCC 671 Query 819 AACACACATTGTGTATGTAGCAAACGGAAAATTGCAGTTAGCATTGCCAATGGAGAAAGT 878 |||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||||||| Sbjct 672 AACACACATTGTGTATGTTGCAAACGGGAAACTGCAATTAGCATTGCCAATGGAGAAAGT 731 Query 879 GAAGGAGACAAGCAAGAAGTCATTGAtgagaacagttgagagttggctgaggaaagaaag 938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 GAAGGAGACAAGCAAGAAGTCATTGATGAGAACAGTTGAGAGTTGGCTGAGGAAAGAAAG 791 Query 939 agatgaagagagaaagagaaggaaagagaggaaagCTAATGGGCTTCCAGAGTTTGAAAC 998 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 792 AGATGAAGAGAGAAAGAGAAGGAAAGAGAGGAAAGCAAATGGGCTTCCGGAGTTTGAAAC 851 Query 999 ACGGACTGAAGAAAGCCGTGTGACTGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 1058 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 852 ACGGACTGAAGAAAGCCGTGTGACCGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 911 Query 1059 TGCCGGGAGACTTCACTCTACGGTTGCAGGTGGTGAGGATAATTTCGTCTTAAGCTCAAA 1118 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 912 CGCCGGGAGACTCCACTCTACGGTTGCAGGCGGTGAGGATAATTTCGTCTTAAGCTCAAA 971 Query 1119 CAGAGTTCTAAGATAA 1134 |||||||||||||||| Sbjct 972 CAGAGTTCTAAGATAA 987 Score = 776 bits (420), Expect = 0.0 Identities = 428/432 (99%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 70 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 60 Query 130 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 120 Query 190 TTCTCAATCACGCTTAATTCCAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 249 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCTCAATCACGCTTAATTCGAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 180 Query 250 AAAACGACGATTCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 309 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAACGACGATTCTGAAGATACTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 240 Query 310 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACCTCTTCTGGTGATCTCTGTTAT 369 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACATCTTCTGGTGATCTCTGTTAT 300 Query 370 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAAGTTCCGATACAAATG 429 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 301 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAGGTTCCGATACAAATG 360 Query 430 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 420 Query 490 GAGTTGATCAAG 501 |||||||||||| Sbjct 421 GAGTTGATCAAG 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45671254566 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5