BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02370.1 Length=2417 Score E Sequences producing significant alignments: (Bits) Value Ahg487012 jgi|Araly1|487012|fgenesh2_kg.6__146__AT5G02370.1 3243 0.0 > Ahg487012 jgi|Araly1|487012|fgenesh2_kg.6__146__AT5G02370.1 Length=2348 Score = 3243 bits (1756), Expect = 0.0 Identities = 2155/2343 (92%), Gaps = 46/2343 (2%) Strand=Plus/Plus Query 70 TTGTTAGATTCGTCTTCGATTTCTAATGTCAGAGTCGTCCTTAGGGTTCGTCCTTTTCTT 129 ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 41 TTGTTGGATTCTTCTTCGATTTCTAAAGTCAGGGTCGTCCTTAGGGTTCGTCCTTTTCTT 100 Query 130 CCCCGGGAGATTTCGGACGAGAGTTGTGACGGGAGATCGTGCGTTTCCGTAATCGGCGGC 189 |||| | ||||||| | | | | |||||||||||||||||||| | || Sbjct 101 CCCC----G-----GGACGAG-G--G-G-C----GATCGTGCGTTTCCGTAATCAACAGC 142 Query 190 GATGGAGGAGATACCAGCGAAGTGGCGGTTTACCTCAAAGATCCAGATAGCTGTCGTAAC 249 |||| ||||| | ||||||||| | ||| |||||||||||||||| |||||||||||| Sbjct 143 GATGCCGGAGAGGCTAGCGAAGTGACAGTTCACCTCAAAGATCCAGAGAGCTGTCGTAAC 202 Query 250 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGAGGATGATAATGTGAAGCATATATTC 309 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 203 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGATGATGATAATGTGAAGCAGATATTC 262 Query 310 GATAGAGAAGTAAGCCCTTTGATTCCTGGGATCTTTCATGGTTTCAATGCTACTGTGCTT 369 ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 263 GATAGAGAATTAAGCCCTTTGATTCATGGGATCTTTCATGGTTTCAACGCTACAGTGCTT 322 Query 370 GCTTATGGAGCCACCGGAAGCGGAAAGACTTTTACGATGCAGGGAATCGATGAGCTACCA 429 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 323 GCTTATGGAGCCACCGGAAGCGGAAAGACGTTTACGATGCAGGGAATTGATGAGCTACCA 382 Query 430 GGTCTGATGCCATTGACCATGTCCACCATTCTGTCTATGTGCGAGAAGACAAGG-AGTAG 488 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| Sbjct 383 GGTCTGATGCCATTGACCATGTCCAACATTCTGTCTATGTGCGAGAAGAC-AGGAAGTAG 441 Query 489 GGCTGAGATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATCTTC-TAGAAGTTA 547 || || |||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 442 AGCAGATATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATC-TCTTAGAAGTTA 500 Query 548 AAGACAACGAGATTGCTGTTTGGGATGATAAAG-ATGGACAAGTTCATCTTAAGGGACTT 606 ||| ||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 501 AAGCCAATGAGATTGCTATTTGGGATGAT-AAGAATGGACAAGTTCATCTTAAGGGACTT 559 Query 607 TCTAGTGTCCCTGTTAAGTCCATGTCTGAGTTTCAAGAGGCGTATTTGTGTGGCGTTCAG 666 ||||||||||||||||| |||||| |||||||||| ||||| || | ||||||||||||| Sbjct 560 TCTAGTGTCCCTGTTAACTCCATGCCTGAGTTTCACGAGGCATACTCGTGTGGCGTTCAG 619 Query 667 AGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 726 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 CGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 679 Query 727 GTGATCTCAGTAACCTCACAAGGG-CTTGTCACTGGTAAAATCAATCTGATTGATCTTGC 785 ||||||||||||||||| |||||| || |||||||| ||||||||| ||||||| || || Sbjct 680 GTGATCTCAGTAACCTCTCAAGGGGCT-GTCACTGGAAAAATCAATTTGATTGACCTGGC 738 Query 786 AGGTAACGAAGACAATAGAAGGACAGGCAATGAAGGGATCCGT-TTACAAGAGAGTGCCA 844 |||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||| Sbjct 739 AGGTAACGAAGATAATAGAAGGACAGGCAATGAAGGAATCCGTCTT-CAAGAGAGTGCCA 797 Query 845 AGATTAATCAGTCATTATTTGCATTGTCCAATGTGGTTTATGCACTGAATAATAACCTCC 904 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 798 AGATTAATCAGTCATTATTTGCTTTGTCCAATGTGGTTTATGCACTGAATAATAACCTGC 857 Query 905 CTAGAGTGCCATACAGGGAAACCAAATTGACTAGAATACTGCAGGATTCACTTGGTGGAA 964 | ||||| || |||||||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 858 CAAGAGTTCCTTACAGGGAAAGCAAATTGACTAGAATCCTGCAGGATTCACTTGGAGGAA 917 Query 965 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 977 Query 1025 CCGTTAGCCTGGCTGCAAGGTCAAGGCACATCTCAAACAATGTTTCTCTGAATCCCAAGG 1084 | |||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||| Sbjct 978 CTGTTAGCTTGGCTGCAAGGTCAAGGCACATTTCAAACAATATTTCTTTGAATCCCAAGG 1037 Query 1085 TAGAGACCCCCAAGGTTAAGATAGACATGGAAGCAAAACTGCAAGCTTGGCTTGAATCAA 1144 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 1038 TAGAGACCCCCAAGGTTAAGATAGATATGGGAGCAAAACTGCAAGCTTGGCTTGAATCAA 1097 Query 1145 AAGGCAAGATGAAGAGCGCGCATAGAATGATGGCAATACGGTCTCCATTGATGGGTACAA 1204 ||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1098 AAGGCAAGACGAAAAGTGCGCATAGAATGATGGCAATACGTTCTCCATTGATGGGTACAA 1157 Query 1205 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAATTACTC-TGTCATAGATCAGCCATT 1263 ||||||||||||||||||||||||||||||||||| | | ||||| |||||| ||||| Sbjct 1158 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAACT-CGGATGTCAAAGATCAACCATT 1216 Query 1264 GCAGAAAGTGCTAAGCTTGCCGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGAAAC 1323 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1217 GCAGAAAGTGCTAAACTTGCTGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGGAAC 1276 Query 1324 TTATTTGGTGTGGAAACTCTTGCTGCTTCACATTTATGGGAACCTATACGGAATCTGCAG 1383 |||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||| Sbjct 1277 TTATTTGGTGGGGAAACTCATGCTGCTTCACATTTATGGGAACCAATACAGAATCTGCAC 1336 Query 1384 TTAGCTTCTCCAACCAAAGAAGATGAGAGAGACACATCTGGCGAAGAGAATCTATTGGTA 1443 ||||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||| Sbjct 1337 TTAGCTTCTCCAACCAAAGGAGATGAGAGAGACACATCTGCCAAAGATAATCTATTGGTA 1396 Query 1444 TCAGAAGCAAGCTTGAGAGATAACACATT-GGATGTCGAGAAGAAATATACTGAACTGAG 1502 ||||||||||||||||||||||| || | || |||| ||| |||| || |||||||| Sbjct 1397 CCAGAAGCAAGCTTGAGAGATAACTCACTCGGGC-TCGAAAAGGAATACACAGAACTGAG 1455 Query 1503 TCCTCTTCGAGAAGCTCTATCTCCAATAGACTCCAATGCAAAACCAAATTCAGCACACGG 1562 |||| ||||||||||||| |||||| ||||||| |||||| ||||| |||||| | | Sbjct 1456 TCCTTTTCGAGAAGCTCTGTCTCCAGTAGACTCAAATGCA---CCAAAATCAGCAGATGC 1512 Query 1563 AAGCTCTCCTTTTCTGAAGCCAATGACCCCAAAAACACCTTTTCTTTCTACAAACCCTGA 1622 ||||||||| |||| ||||||||||| ||||||||||||||| ||| | |||| |||| Sbjct 1513 AAGCTCTCCCATTCTCAAGCCAATGACTCCAAAAACACCTTTTATTTATGCAAATGCTGA 1572 Query 1623 -AATTATGCAGATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCAATAATTTAAAGA 1681 ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1573 GAAT-ATGCAAATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCACTAATTTAAAGA 1631 Query 1682 CCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAGAGGAGCTAAGGG 1741 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1632 CCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAAAGGAGCTAAGGG 1691 Query 1742 AATTAAAGGGAATTGGGCAGAAGATGGCTGAGTACATCATTGAACTCAGAGAAACAAGCC 1801 | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1692 AGTTAAAGGGAATTGGACAGAAGATGGCTGAGTACATTATTGAACTCAGAGAAACAAGCC 1751 Query 1802 CTTTAAAATCGCTTACCGACTTAGAAAAGATCGGTTTCACCTCAAGACAGGTACATAACC 1861 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1752 CTTTAAAATCGCTTACCGACTTAGAGAAGATCGGTTTCACCTCAAGACAGGTACATAACC 1811 Query 1862 TATTCAAAAAAGCCACTGAAGGAGTCCTCGAGAAGCCAGTTTCTGCTTCAACAACACCTT 1921 ||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||| Sbjct 1812 AATTCAAAAAAGCCACAGAAGGAATTCTTGAGAAGCCAGTTTCTGCTTCAACAACACCTT 1871 Query 1922 AGTTGTTGTCTCTAGCAAACAA-CAACACTTGTGTATTATATCAGTTCTATCTCGTGTAA 1980 |||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||| Sbjct 1872 AGTTGTTGTCTCTAGCAAACAAACAACACTTGTGTATTATG--AGTTCTGTCTCGCGTAA 1929 Query 1981 TTTCATTATTGTCTGTTCTTGTATGTTTAAGCTTTATAACCAGAGAGACAATGGGCTTGA 2040 | |||||||||||||||||||| ||||||| ||||||||||||||||| | || ||||| Sbjct 1930 TCTCATTATTGTCTGTTCTTGTTTGTTTAA-CTTTATAACCAGAGAGATA-TGTACTTGA 1987 Query 2041 ATCTTAATTGTGTAGTGAGCAAGAAAGAAGCAAACTTTAATACAAACCCATAATAGTCTT 2100 |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || Sbjct 1988 ATCTTAATTGTGTACTGAGCAAGAAAGAAGCAAACTTTAATACAGACCCATAATAGTTTT 2047 Query 2101 AGGATTAATAAAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATAA 2160 | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2048 CG-ATTAATACAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATAA 2106 Query 2161 AAACACACACA-GAA-GAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGAAAAATCA 2218 || |||||| | ||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 2107 AA-CACACAGAAGAAAGAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGCGACATCA 2165 Query 2219 GCCAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGTT 2278 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2166 GCTAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGTT 2225 Query 2279 TATGAAGTTCTTCATTTGCAGGCAGATCCACAACCACAGCTTCCACCACAGCAAGACATG 2338 |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 2226 TATGGAGTTCTTCATTTGCAGCCAGATCCGCAACCACAGCTTCCACCACAGCAAGACATG 2285 Query 2339 TTTTTTCTAGAAAATTGGAAGAGATCTGAGAAGATTTATGAAGATGATCTTAATTTGCCT 2398 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 2286 TTTTTTCTAGAAAATTGGAAGAGATCTCAGAAGAATTATGAAGATGATCTTAATTTGCCT 2345 Query 2399 TAA 2401 ||| Sbjct 2346 TAA 2348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91073775795 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5