BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02430.1 Length=2718 Score E Sequences producing significant alignments: (Bits) Value Ahg349540 jgi|Araly1|349540|fgenesh1_pg.C_scaffold_6000133 4407 0.0 Ahg345530 jgi|Araly1|345530|fgenesh1_pg.C_scaffold_4001872 525 6e-148 Ahg359776 jgi|Araly1|359776|fgenesh1_pg.C_scaffold_964000001 296 5e-79 > Ahg349540 jgi|Araly1|349540|fgenesh1_pg.C_scaffold_6000133 Length=2721 Score = 4407 bits (2386), Expect = 0.0 Identities = 2615/2726 (96%), Gaps = 13/2726 (0%) Strand=Plus/Plus Query 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGATCGGAAGAAGACGATGACGATGAAT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGAACGGAAGAAGACGATGACGATGAAT 60 Query 61 TGGGCGGGGTTAGGCGAGTTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGT 120 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGGCGGGGTTAGGCGAGGTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGA 120 Query 121 ATCTCCACCGTCGTACCTTCGGATTTAGCATCATCTTCTGACGAAGAAGAAGGTGAGTTT 180 ||||||||||| || |||| |||||||||||||||||| || || ||||||||||||||| Sbjct 121 ATCTCCACCGTTGTGCCTTTGGATTTAGCATCATCTTCAGATGAGGAAGAAGGTGAGTTT 180 Query 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTGTCGTCCTCCTCTCGCGCTGCTCCTGCG 240 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTATCGTCCTCCTCTCGCGCTGCTCCTGCG 240 Query 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300 Query 301 CGTCGAAGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTAGGCTCGGAGCTATC 360 ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 301 CGTCGTCGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTATGCTTGGAGCTATC 360 Query 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGCGACGGGTGAGTGCTCAGGTTCTCGCGTT 420 ||||||||||||||||||||||||||||||| | |||||| |||||| |||||||||||| Sbjct 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGTGGCGGGTGTGTGCTCTGGTTCTCGCGTT 420 Query 421 GCGGAAGTGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAAAGAGTTCGTCGA 480 ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 421 GCGGAAGCGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAACGAGTTCATCGA 480 Query 481 TCTCCGTCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCCGATATCGAAGCGTCT 540 ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 481 TCTTCATCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCTGATATCGAAGCGTCT 540 Query 541 TCTGCTGAGAAACAGAGGAAAGAAGAGATGTTAGGGAAAACGTCGAAATCGCGATTGACT 600 |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 541 TCTGCTGAGAAAAAGAGGAAGGAAGAGATGTTAGGGAAAACTTCGAAATCGCGATTAACT 600 Query 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGGATTTGTCCCTACTTCACCCAAACG 660 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGAATTTGTCCCTACTTCACCCAAACG 660 Query 661 CAAGCCTCGCCGCCGGACGCACCAAACGGTCATCATCAGTCTCAAGGCCAACGTAGTGGT 720 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 661 CAAGCCTCGCCGCCGGACGCACCAAACGG---TCATCAGTCTCAAGGCCAACGTAGTGGT 717 Query 721 CCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATTAAGAAC 780 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 718 GCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATCAAGAAT 777 Query 781 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 837 Query 841 CTTAGCGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAGAGTGTTGGT 900 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 838 CTTAGTGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAAAGTGTTGGC 897 Query 901 TATTCATCTGTTGTTAAGGATCTTATGAGAAGAGAGAACGCGAATTCGACGATGGATTTT 960 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 898 TATTCATCTGTTGTTAAGGATCTTATGAGACGAGAGAACGCGAATTCGACGATAGATTTT 957 Query 961 AGGAAATTTAACTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1020 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AGGAAATTCAATTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1017 Query 1021 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1077 Query 1081 GAGAAGGATTCAACTGGTAGTGGCACAAGTAGTCCAAAAGTAGCGGAGAAGAACAATGAG 1140 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 1078 GAGAAGGATTCAACTGGTAGTGGTACAAGTAGTCCAAAAGTAGTGGAGAAGAACAATGAG 1137 Query 1141 CAGGCGAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1200 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 CAGGCAAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1197 Query 1201 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1257 Query 1261 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1317 Query 1321 CAAGAATGTGAAATCATGTCAATGAATGAAGGGAGCTTGACACCTATTCATCCTTCAATG 1380 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1318 CAAGAATGTGAAATCATGTCAATGAGTGAAGGGAGCTTGACACCGATTCATCCTTCAATG 1377 Query 1381 TCTGGTTCCACAGATAAATCGTC---GGAAGGTGATGCTGCAGAAGTGTCACAAGATAAG 1437 ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1378 TCTGGTTCCACGGATAAATCGTCTACGGAAGGTGATGCTGCAGAAGTGTCACAGGATAAG 1437 Query 1438 AAGAAGAAAGGGAAAACTTCAATGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1438 AAGAAAAAAGGGAAAACTTCAACGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497 Query 1498 GCGCCTGAAACTGTGTTCTCCTTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1498 GCGCCTGAAACTGTGTTCTCATTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557 Query 1558 GATGATGTTCTGGACTTATCTTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1558 GATGATGTTCTGGACTTATCCTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617 Query 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677 Query 1678 GACTATGTTACTTGTGTACAATTCAATCCATTGGATGAAGATTACTTCATTAGTGGCTCC 1737 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1678 GACTATGTTACTTGTGTACAATTCAATCCACTGGATGAAGATTACTTCATCAGTGGCTCC 1737 Query 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTAGTTGAGTGGAATGAT 1797 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTCGTTGAGTGGAATGAT 1797 Query 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857 Query 1858 TCAATTAATGGGCATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 TCAATTAATGGGAATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917 Query 1918 CAGATAGATCTGCAGAACAAAAAGAAGGCTCAAGCTAAAAAGATCACAGCTTTTCAGTTT 1977 |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| Sbjct 1918 CAGATAGATCTGCAAAACAAAAAGAAAGCTCAAGCTAAAAAGATCACAGCCTTCCAGTTT 1977 Query 1978 TCGCCAATTAATCCATCAGAAGTGCTTGTAACTTCTGCTGATTCACGCATTCGGGTTCTT 2037 || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1978 TCTCCAATTAATCCATCAGAAGTGCTTGTAACTTCCGCTGATTCACGCATTCGGATTCTC 2037 Query 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATGAACAGCCAAATGACA 2097 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATTAACAGCCAAATGACA 2097 Query 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGCGCTAGCGAAGACTCACAGGTTTAC 2157 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGTGCAAGCGAAGACTCACAGGTTTAC 2157 Query 2158 GTGTGGAAACACGAGGAGCCACGACTAGGTATCACCGGTAGAAAAACAGTCACCATGTGT 2217 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 2158 GTGTGGAAACACGAGGAGCCACGACTAGGAATCACCGGTAGAAAAACCGTCACCATGTGT 2217 Query 2218 ACTTCTTATGAAACCTTCCCGTGCAAAGATGTTTCCGTGGCAGTCCCATGGAACGGCGTT 2277 |||||||| ||||| |||||||||||||||||||| |||||| |||| |||||||||||| Sbjct 2218 ACTTCTTACGAAACATTCCCGTGCAAAGATGTTTCAGTGGCAATCCCGTGGAACGGCGTT 2277 Query 2278 GTAAAAGGTGAACCACCATCCACACAACAC-CAATCGAAAAGAAACCCGAA-AAAACCAT 2335 |||||||| |||||||||||||||||| || || || ||||||||||| || ||||| | Sbjct 2278 GTAAAAGGCGAACCACCATCCACACAA-ACTCAGTCTAAAAGAAACCCAAAGAAAACT-T 2335 Query 2336 CAACTACTACTAC---TACCCCTGAAAACACGACCACGGGTAAAAAATCAGGCCTCCCAC 2392 ||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||| Sbjct 2336 CAACTACTACTACAACTACCCCGGAAAACGCGACCACGAGTAAAAAATCAGGCCTCCCAC 2395 Query 2393 CATTACCTAAGAAAAACAATGACGGCACCGCGGATGGAGCAACAGAACAACATCAAGAAG 2452 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 2396 CATTACCTAAGAAAAACAATGACGGCACTGCAGATGGAGCAACAGAACAACATCAAGATG 2455 Query 2453 ATGATCCAGCTACGCATATTTCGCATAACGAATCAGAGAACAACACAGGCGAGTCAATAA 2512 ||||||| || ||||| ||| |||| ||||||||||||||||||||||| |||||| ||| Sbjct 2456 ATGATCCCGCAACGCAGATTCCGCAAAACGAATCAGAGAACAACACAGGAGAGTCATTAA 2515 Query 2513 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCGTGGTTTG 2572 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2516 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCTTGGTTTG 2575 Query 2573 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATTG 2632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2576 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATCG 2635 Query 2633 TTACAGCCACAATCAAGGGCCAAATCCGAACTTACCAAAATTTTGGATTACCACGCAGGG 2692 |||||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||| Sbjct 2636 TTACAGCCACGATCAAGGGCCAAATCCGAGCTTACCAAAATTTCGGATTGCCCCGCAGGG 2695 Query 2693 TCGGTCGTCAAGGCTCTCTGTTTTGA 2718 | |||||||||||||||||||||||| Sbjct 2696 TTGGTCGTCAAGGCTCTCTGTTTTGA 2721 > Ahg345530 jgi|Araly1|345530|fgenesh1_pg.C_scaffold_4001872 Length=2736 Score = 525 bits (284), Expect = 6e-148 Identities = 1093/1465 (75%), Gaps = 130/1465 (9%) Strand=Plus/Plus Query 763 TTTTTCTTGATTAAGAACCTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTG-A 821 ||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||| || | Sbjct 757 TTTTTCTTGATTAAGAATCTTGATACAGGGAAAGAGTTTATAGTGAATGAGTATGATGAA 816 Query 822 GAATGGAATGTGGAATCGGCTTAGCGATTTGCAAACTGGTAAGCAATTGACAATGGAAGA 881 | |||||||||||||| ||||||| ||||||||||| || |||||||| || |||| || Sbjct 817 G-ATGGAATGTGGAATAGGCTTAGTGATTTGCAAACAGGGAAGCAATTAACTTTGGAGGA 875 Query 882 ATTTGAGAAGA-GTGTTGGTTATTCATCTGTTGTTAAGGATCTTATGAGAAGAGAGAACG 940 ||||||||| | |||||||||||||| |||| ||||| || |||||| | |||||||| | Sbjct 876 ATTTGAGAA-ATGTGTTGGTTATTCACCTGTGGTTAAAGAGCTTATGCGTAGAGAGAATG 934 Query 941 CG---A--A-T---T-CG-A-CG---ATGGATTTTAGGAAATTTAACTCGTATGTGTC-A 984 | | | | | || | || |||||| || |||| ||||| |||||| | || | Sbjct 935 TGAATAGGATTAACTACGAACCGTTAATGGATCTTCGGAAGTTTAATTCGTATCTTTCGA 994 Query 985 AAGAGTTTGAGAG-TAAGTAAGAAG-AGAGGAGCTGCTTTGTTAAAGAACAT-AAAGGAC 1041 || || |||| | |||||||| || || || ||||| ||||| |||||||| ||||| Sbjct 995 AA-AGCGTGAG-GTTAAGTAAG-AGAAGGGGTGCTGCATTGTTGAAGAACATAAAAGG-T 1050 Query 1042 GTTGCTCATTCTATGAGCTCTTCTA-AGGTTTCAGAGA-AAGAGAAGGATTCAACTGGTA 1099 || |||||||| ||||| || || |||| | | || || ||| | | | | ||| | Sbjct 1051 GTAGCTCATTCCATGAG---TT-TACGGGTTGC-G-GATAA-AGATGTAAGCGA-TGG-A 1101 Query 1100 GTGGCA-CAAGTAGTCC-AAAAGTAGCGGAGAAGAACAATGAGCA--G----GCGAATCA 1151 ||| | | |||||| |||| || ||| |||| | || |||| | || ||| | Sbjct 1102 --AGCACCGA-TAGTCCGAAAA--AGGGGA-AAGATC-ATAAGCATGGTAAAGCTAATGA 1154 Query 1152 ATGGGTGAAAGTGAG-GCATTCAGGGAAGTCTCATAAAGATTTAAGTGCTTTGCATATGT 1210 ||||||||||| || || ||||||| ||| | || || ||||||||||||||||||| Sbjct 1155 GTGGGTGAAAGTTAGACCA-ACAGGGAAATCTTACAAGGAATTAAGTGCTTTGCATATGT 1213 Query 1211 GTCAAGAGATTCAAGCTCATCAAGGAG-GTATTTGGACTATGAAATTTAGTCCAGATTCA 1269 |||||||||||||||||||| | || | | |||||||||| |||||||||| |||| | Sbjct 1214 GTCAAGAGATTCAAGCTCATGAGGGTGCGG-TTTGGACTATCAAATTTAGTCAAGATGCT 1272 Query 1270 CATTTAT-TAGCAAGTGCAGGGGAGGATTGTG-CAATCCATGTGTGGGAGGTTCAAGAAT 1327 |||| || |||| || | ||| | |||| | | || || |||| |||||||||||||||| Sbjct 1273 CATT-ATCTAGCGAGCGGAGGAGCGGATAGAGTCATTC-ATGTATGGGAGGTTCAAGAAT 1330 Query 1328 GTGAAATCATGTCAATGAATGAAGGGAG-CTTGACACCTATTCATCCTTCAATGTCTGGT 1386 ||||| | ||||| |||||||||||||| || || ||||||||||||||| | | || | Sbjct 1331 GTGAACTAATGTCTATGAATGAAGGGAGTCTC-ACTCCTATTCATCCTTCACT-T-TG-T 1386 Query 1387 TCCACAGATAAATCGTCGGAAGGTGATGCTGCAGAAGTGTCACAAGATAAGAAGAAG-AA 1445 | | | | | |||| ||| | | | | ||| | || ||||| ||| || Sbjct 1387 GACTCTG------C-T-GGAAA-TGA-GAT--A-AC-TGTGGTA-GAGAAGAA-AAGGAA 1430 Query 1446 AGGGAAAA--CTTCAAT-GAGTAAAAAAGGAAACCAG-ATA--CCAGATTATGTCCACGC 1499 ||| |||| || | | | | || | | |||| | ||| || ||||| ||||| | Sbjct 1431 AGG-AAAAGGCT-CT-TCGGG-AAGAC-G-AAACAATCATATTCCGGATTACGTCCATGT 1484 Query 1500 GCCTGAAACTGTGTTCTCCTTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTGGA 1559 |||||||| || |||||||| || ||||| || |||||||||| | ||||| ||||| Sbjct 1485 TCCTGAAACCGTCTTCTCCTTTTCTGATAAGCCTGTTTGCTCTTTGAAAGGTCATTTGGA 1544 Query 1560 TGATGTTCTGGA-CTTATCTTGGTCTCGG-TCACAGCTA-TTGCTTTCATCTTCCATGGA 1616 || | || |||| || || ||||| | || ||||| || ||||||||||||||||| Sbjct 1545 TGCTATTTTGGATCTG-TCATGGTC-CAAATCTCAGCTTCTT-CTTTCATCTTCCATGGA 1601 Query 1617 CAAAACTGTGC-GGTTGTGGGATATTGAAACTCAAAGT-TGTCTAAAACTATTTGCCCAC 1674 |||||| || | |||| |||||| | ||||| |||| ||||| ||| | ||||| || Sbjct 1602 CAAAACAGT-CAGGTTATGGGATCTAGAAAC-CAAAACATGTCTCAAATTGTTTGCTCAT 1659 Query 1675 AATGACTATGTTACTTGTGTACAATTCAATCCATTGGATGAAGATTACTTCATTA-GTGG 1733 |||||||| || || ||| | || || | ||| |||||||| |||| ||| ||| |||| Sbjct 1660 AATGACTACGTGACATGTATCCAGTTTAGCCCAGTGGATGAAAATTATTTC-TTAAGTGG 1718 Query 1734 CTCCCTTGATGCCAAGATCCGTATATGGAACATATCAA-ACCGTCAAGTAGTTGAGTGGA 1792 || ||||| || ||||| | ||||||| |||| ||| | || || || || || |||| Sbjct 1719 TTCACTTGACGCTAAGATAAGGATATGGAGCATA-CAAGATCGACATGTTGTGGAATGGA 1777 Query 1793 ATGATCTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTG 1852 |||||| | ||||||||||| || | ||| || ||||| || ||||||| |||| || Sbjct 1778 GTGATCTTCATGAAATGGTTACTGCTGCTTGCTACACTCCAGACGGTCAGGGTGCACTTA 1837 Query 1853 TTGGTTCA-ATTAATGGGCATT-GCCG-GCTTTAC-AGTGCAGAGGATTGCAAGTTGGAA 1908 | |||||| || || || ||| | || |||| || | | |||| ||||| ||| || | Sbjct 1838 TCGGTTCACATAAA-GGA-ATTTGTCGTGCTT-ACGA-TACAGAAGATTGTAAGCTG-AG 1892 Query 1909 C-AAACAAACCAGATAGATCTGCAGAACAAAAAGAAGGCTCAAGCTAAAA--A-GATCAC 1964 | |||| | ||||| ||| | |||| ||| ||||| | ||||| |||| | |||||| Sbjct 1893 CCAAACTAGTCAGATTGATGTTCAGAGCAATAAGAAATCGCAAGCGAAAAGGAAGATCAC 1952 Query 1965 -AGCTTTTCAGTTTTCGCCAATTAATCCATCAGAAGTGCTTGTAACTTCTGCTGATTCAC 2023 || |||||||||||| || | |||||||| ||||| ||||| || || |||||||||| Sbjct 1953 TAG-TTTTCAGTTTTCCCCGGTGAATCCATCCGAAGTTCTTGTCACATCCGCTGATTCAC 2011 Query 2024 GCATTCGGGTTCTT-GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATG 2082 | ||||| | || |||||| ||||| || |||| ||||||| |||||| | ||||| | Sbjct 2012 GGATTCGAATA-TTAGACGGTTCTGAAGTTATTCACAAATTCAAAGGCTTTAGAAACACG 2070 Query 2083 AACAGCCAAATGACAGCATCTTACA-C-AGTAGATGCTAAGCACATTGTCTGCGCTAGCG 2140 |||||| | | || || || | | | ||||| || |||| | || || || | Sbjct 2071 TGTAGCCAACTCTCTGCTTCCTATAGCCA--AGATGGGAAATACATAATATGTGCAAGTG 2128 Query 2141 AAGACTCACAGGTTTACGTGTGGAA 2165 ||||||| ||||||||| | ||||| Sbjct 2129 AAGACTCTCAGGTTTACTTATGGAA 2153 > Ahg359776 jgi|Araly1|359776|fgenesh1_pg.C_scaffold_964000001 Length=1200 Score = 296 bits (160), Expect = 5e-79 Identities = 683/923 (74%), Gaps = 86/923 (9%) Strand=Plus/Plus Query 952 ATGGATTTTAGGAAATTTAACTCGTATGTGTC-AAAGAGTTTGAGAG-TAAGTAAGAAG- 1008 |||||| || |||| ||||| |||||| | || ||| || |||| | | |||||| || Sbjct 1 ATGGATCTTCGGAAGTTTAATTCGTATCTTTCGAAA-AGCGTGAG-GTTGAGTAAG-AGA 57 Query 1009 AGAGGAGCTGCTTTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTA-A 1067 ||||||||||| ||||| |||||||| |||| || |||||||| ||||| || || Sbjct 58 AGAGGAGCTGCATTGTTGAAGAACATTAAGGGTGTAGCTCATTCCATGAG---TT-TACG 113 Query 1068 GGTTTCAGAGA-AAGAGAAGGATTCAACTGGTAGTGGCA-CAAGTAGTCC-AAAAGTAGC 1124 |||| | | || || ||| | | | | ||| | ||| | | |||||| |||| || Sbjct 114 GGTTGC-G-GATAA-AGATGTAAGCGA-TGG-A--AGCACCGA-TAGTCCGAAAA--AGG 163 Query 1125 GGAGAAGAACAATGAGCA--G----GCGAATCAATGGGTGAAAGTGAG-GCATTCAGGGA 1177 ||| |||| | || |||| | || ||| | ||||||||||| || || |||||| Sbjct 164 GGA-AAGATC-ATAAGCATGGTAAAGCTAATGAGTGGGTGAAAGTTAGACCA-ACAGGGA 220 Query 1178 AGTCTCATAAAGATTTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGA- 1236 | ||| | || || |||||||||||||||||||||||||||||||||||||| | ||| Sbjct 221 AATCTTACAAGGAATTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCA-CGAGGGT 279 Query 1237 G-GTATTTGGACTATGAAATTTAGTCCAGATTCACATTTAT-TAGCAAGTGCAGGGGAGG 1294 | | |||||||||| || ||||||| |||| | |||| || |||| || | ||| | || Sbjct 280 GCGG-TTTGGACTATTAAGTTTAGTCAAGATGCTCATT-ATCTAGCGAGCGGAGGAGCGG 337 Query 1295 ATTGTG-CAATCCATGTGTGGGAGGTTCAAGAATGTGAAATCATGTCAATGAATGAAGGG 1353 || | | || || |||| ||||||||||||||||||||| | ||||| |||||||||||| Sbjct 338 ATAGAGTCATTC-ATGTATGGGAGGTTCAAGAATGTGAACTAATGTCTATGAATGAAGGG 396 Query 1354 AG-CTTGACACCTATTCATCCTTCAATGTCTGGTTCCACAGATAAATCGTCGGAAGGTGA 1412 || || || ||||||||||||||| | | || | | | | | | |||| ||| Sbjct 397 AGTCTC-ACTCCTATTCATCCTTCACT-T-TG-TGACTCTG------C-T-GGAAA-TGA 443 Query 1413 TGCTGCAGAAGTGTCACAAGATAAGAAGAAG-AAAGGGAAAA--CT--TCAATGAGTAAA 1467 | | | | ||| | || ||||| ||| ||||| |||| || || ||| | Sbjct 444 -GAT--A-AC-TGTGGTA-GAGAAGAA-AAGGAAAGG-AAAAGGCTCATCGGGGAGGCGA 495 Query 1468 AAAGGAAACCAGATACCAGATTATGTCCACGCGCCTGAAACTGTGTTCTCCTTGTCAGAT 1527 || || | | || || ||||| || || | |||||||| || |||||||| || ||| Sbjct 496 AAC--AATC-ATATTCCGGATTACGTACATGTTCCTGAAACCGTCTTCTCCTTTTCTGAT 552 Query 1528 AAACCAATTTGCTCTTTCACTGGTCACTTGGATGATGTTCTGGA-CTTATCTTGGTCTCG 1586 || || |||||||||| | ||||| ||||||| | || |||| || || ||||| | Sbjct 553 AAGCCTGTTTGCTCTTTGAAAGGTCATTTGGATGCTATTTTGGATCTG-TCATGGTC-CA 610 Query 1587 G-TCACAGCTA-TTGCTTTCATCTTCCATGGACAAAACTGTGC-GGTTGTGGGATATTGA 1643 || ||||| || ||||||||||||||||||||||| || | |||| |||||| | || Sbjct 611 AATCTCAGCTTCTT-CTTTCATCTTCCATGGACAAAACAGT-CAGGTTATGGGATCTAGA 668 Query 1644 AACTCAAAGT-TGTCTAAAACTATTTGCCCACAATGACTATGTTACTTGTGTACAATTCA 1702 ||| |||| ||||| ||||| |||||||| ||||||||||| || ||| | || || | Sbjct 669 AAC-CAAAACATGTCTCAAACTGTTTGCCCATAATGACTATGTGACATGTATCCAGTTTA 727 Query 1703 ATCCATTGGATGAAGATTACTTCATTA-GTGGCTCCCTTGATGCCAAGATCCGTATATGG 1761 ||| |||||||| |||| ||| ||| |||| || ||||| || ||||| | |||||| Sbjct 728 GCCCAGTGGATGAAAATTATTTC-TTAAGTGGTTCACTTGACGCTAAGATAAGGATATGG 786 Query 1762 AACATATCAA-ACCGTCAAGTAGTTGAGTGGAATGATCTAAAGGAAATGGTTACCGCGGT 1820 | |||| ||| | || || || || || |||| |||||| | ||||||||||| || | Sbjct 787 AGCATA-CAAGATCGACATGTTGTGGAATGGAGTGATCTTCATGAAATGGTTACTGCTGC 845 Query 1821 TTGTTATACTCCTGATGGTCAGG 1843 ||| || ||||| || ||||||| Sbjct 846 TTGCTACACTCCAGACGGTCAGG 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102538939540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5