BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02710.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487044 jgi|Araly1|487044|fgenesh2_kg.6__178__AT5G02710.1 1437 0.0
> Ahg487044 jgi|Araly1|487044|fgenesh2_kg.6__178__AT5G02710.1
Length=1018
Score = 1437 bits (778), Expect = 0.0
Identities = 951/1031 (92%), Gaps = 25/1031 (2%)
Strand=Plus/Plus
Query 7 TAATCTTATCTTGACAACATTTCTTGCTTCTCTAATTTGCGCCAAAAGAAAAATGGATAT 66
|||||||||||||| |||||||||||| | ||||||||||||| || |||||||| |||
Sbjct 1 TAATCTTATCTTGAGAACATTTCTTGC-T-TCTAATTTGCGCC--AA-AAAAATGGTTAT 55
Query 67 GTCGCTTGCGTTATCGACGGCACCAATGAGTAGGACGATTATCTCTGCCACGAGGCGGTC 126
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 56 TTCGCTTGCGTTATCGACGGCACCAATGAGCACGACGATTATCTCTGCTACGAGGCGGTC 115
Query 127 CCAAGTTTCACAACCTAAAGCTAAGAAAGTCAAGCCGGCGAATAAGCGGCC-A--ACGAT 183
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 116 CCAAGTTTCACAACCTAAAGCTAAGAAAGTCAAGCCGGAGAATAAGCGGCCAACGACGAC 175
Query 184 GTCGACAAGCGGTTTCTCCGGCGGAACGACAAAGGAGTTGACTTGGAAGTGCGTAGAAGG 243
|||||| |||||||| |||||| |||| || ||||| ||||||||||||||||| |||||
Sbjct 176 GTCGACGAGCGGTTTTTCCGGCAGAACAACGAAGGAATTGACTTGGAAGTGCGTCGAAGG 235
Query 244 TTGTGGAGCTTGCTGTAAGATTGCAAAGGACTTTTC-CTTT-GCAACACCTGACGAAATC 301
||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 236 TTGTGGAGCTTGCTGTAAGATTGCAAAGGAC--TTCGCTTTCGCAACACCTGACGAAATC 293
Query 302 TTCGACAACCCTGATGATGTTGAGCTGTATCGAAGCATGATCGGAGATGATGGATGGTGT 361
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 294 TTCGACAACCCTGATGATGTGGAGCTGTATCGAAGCATGATTGGAGATGATGGATGGTG- 352
Query 362 C-TAAACTACGACAAAGCTACACGCAAATGCTCTATTTATGCTGATCGTCCATATTTTTG 420
| |||||||| ||||| |||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 353 CATAAACTACAACAAATCTACACGCAAATGCTCGATTTATTCTGATCGTCCATACTTTTG 412
Query 421 TCGGGTTGAGCCAGAGGTTTTCAAGTCACTCTACGGGATTGAAGAAAAGAAATTCAACAA 480
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCGTGTTGAGCCCGAGGTTTTCAAGTCACTCTACGGGATTGAAGAAAAGAAATTCAACAA 472
Query 481 GGAAGCTGTCAGCTGCTGCATTGACACAATTAAGACGATATACGGCCCTGATTCCAAAGA 540
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 473 GGAAGCTGTCAGCTGCTGCATTGACACCATTAAGACGATATATGGCCCTGATTCCAAAGA 532
Query 541 ATTGGATAGCTTCAACCGTGCCATCAGAAGTAATCCGAGCTCGAGTTGATTAGTCAGATA 600
|||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 533 ATTGGATAACTTCAACCGTGCCATAAGAAGTAGTCCGAGCTCGAGTTGA-TAGTCAGATA 591
Query 601 AACTCAAAGGAAGGAAACAGAAATAAGGAAATTAGTTATTACTCACCGGAGTGGAACTTG 660
|||||||||| |||||||| |||| || |||||||| |||||||||||||| || ||||
Sbjct 592 AACTCAAAGGCAGGAAACACAAATGCGGGAATTAGTTTTTACTCACCGGAGTCGAGCTTG 651
Query 661 GCGCAACCGTGGCAGACAAAAGTAGCATTAATCTCCTTTTCTTTAAAATGCATATAAACT 720
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 652 GCGCAACCGTGGCAGACAAAAGTAGCGTTAATCTCTTTTTCTTTAAAATGCATATAGACT 711
Query 721 TGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACTCTTTGTCTGAAACG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACTCTTTGTCTGAAACG 771
Query 781 AGGCTGCCTTGCTCATAGATTCCGCATCGTTTACACTTTTCGCCACCAATTCCAGTCATA 840
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 772 AGGCTGCCTTGCTCATAGATTCCGCATCGCTTACACTTTTCGCCACCGATTTCAGTCATA 831
Query 841 GGCTGTAAC--AGGCAATAGAGTGAAGAA-CATATATGTATTTATCCA-TGTTATTAATA 896
||||||| | || | ||||||||||||| |||||||||||||| || | |||||||||
Sbjct 832 GGCTGTA-CGTAG-CGATAGAGTGAAGAAACATATATGTATTTAAACAATCTTATTAATA 889
Query 897 GATTGTAGTAAT-GAACGGATGTAAAAGAGATTTGGGACTAGCCTGCCATGATTCTTGAC 955
|| ||||||||| || || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 890 GAGTGTAGTAATAGAT-GGTTGTAAAAGAGAATTGGGACGAGCCTGCCATGATTCTTGAC 948
Query 956 CGCGGAAAGTGTACAAGACACCTGTTTTGGTAACGTCTGGAAGAACAGTTTTGTTCTCTC 1015
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 949 CGCGGAAAGTATACAAGACACCGGTTTTGGTAACATCTGGAAGAACAGTTTTGTTCTCTC 1008
Query 1016 C-ATTGCATTG 1025
| || ||||||
Sbjct 1009 CTAT-GCATTG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5