BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02800.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487056 jgi|Araly1|487056|fgenesh2_kg.6__190__AT5G02800.1 2488 0.0
Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1 368 6e-101
Ahg950010 jgi|Araly1|950010|scaffold_801897.1 207 1e-52
Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025 169 7e-41
> Ahg487056 jgi|Araly1|487056|fgenesh2_kg.6__190__AT5G02800.1
Length=1569
Score = 2488 bits (1347), Expect = 0.0
Identities = 1500/1573 (95%), Gaps = 13/1573 (1%)
Strand=Plus/Plus
Query 16 ttttttACATTTCAAAGTTCTCTAAG---C--T-tctctctctctctctcGCTTTTGAGA 69
|||| |||||||||||||||||| || | | ||||||||||||||||||||| ||||
Sbjct 1 TTTTCTACATTTCAAAGTTCTCTCAGCTTCTTTCTCTCTCTCTCTCTCTCGCTTTCGAGA 60
Query 70 TCATCGAACACAATCGAAACGAAGAATCATTTGAAGAAGAAGAAGATCGTGAGAAGCTTA 129
||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 61 TCATCGAACACAATCAAAACGAAGAATCACTTGAAGAGGAAGAAGATC--GAGAAGCTTA 118
Query 130 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGTGGGAGGAATAAGACAAGGAGGAACGGT 189
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 119 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGCGGGAGGACTAAGACAAGGAGGAACGGT 178
Query 190 GACCACAAACTCGACAGGAAGTCTTCTGATTGTTCTGTGTCTACTTCAGAGAAATCTAGG 249
||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 179 GACCAAAAACTCAACAGGAAGTCTTCTGATTGTTCTGTCTCTACTTCAGAGAAATCTAAG 238
Query 250 GCCAAGTCGTCCTTGAGTGAATCCAAAAGTAAAGGCTCTGATCACATTGTGGCACAAACG 309
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 GCCAAGTCGTCCTTGAGTCAATCCAAAAGTAAAGGCTCTGATCACATTGTCGCACAAACG 298
Query 310 TTTACATTCTCTGAGTTAGCTACTGCCACTAGAAACTTCAGAAAAGAATGTCTTATAGGA 369
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTACATTCTCTGAGCTAGCTACTGCCACTAGAAACTTCAGAAAAGAATGTCTTATAGGA 358
Query 370 GAAGGAGGATTTGGTAGAGTTTACAAAGGATACTTGGCCAGCACTAGCCAGACAGCGGCT 429
||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 359 GAAGGTGGATTTGGTAGAGTTTACAAAGGATATTTAGCCAGCACTGGCCAGACAGCGGCT 418
Query 430 ATCAAGCAACTTGATCATAATGGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCTC 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCAAGCAACTTGATCATAATGGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCTC 478
Query 490 ATGTTGAGTCTTCTTCATCACCCGAATCTTGTTAACTTAATAGGATATTGTGCTGATGGA 549
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGTTGAGTCTTCTTCATCACCCCAATCTTGTTAACTTAATAGGATATTGTGCTGATGGA 538
Query 550 GATCAAAGGCTTCTAGTCTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATTTGCAC 609
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATCAAAGGCTTCTAGTTTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATTTGCAC 598
Query 610 GACATTTCACCTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGCTGCCGGT 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 GACATTTCACCTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGCTGCAGGT 658
Query 670 GCTGCAAAAGGTTTGGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTATCGAGAT 729
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCTGCAAAAGGATTAGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTATCGAGAT 718
Query 730 TTGAAATGCTCAAATATTTTGCTCGATGATGATTACTTTCCAAAGCTATCCGACTTCGGG 789
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 719 TTGAAATGCTCAAATATTTTGCTCGACGATGATTACTATCCAAAGCTATCCGACTTCGGG 778
Query 790 TTGGCTAAACTTGGCCCAGTTGGG-GACAAGTCTCATGTGTCCACTCGGGTTATGGGAAC 848
|||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||
Sbjct 779 TTGGCTAAACTTGGCCCAGT-GGGTGACAAGTCTCATGTGTCGACTCGAGTTATGGGAAC 837
Query 849 ATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAGCTAACACTCAAATCAGACGT 908
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 ATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAACTAACACTCAAATCAGACGT 897
Query 909 TTACAGCTTCGGTGTTGTTCTGTTGGAGATTATAACTGGTCGGAAAGCAATAGACAGTTC 968
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 898 TTACAGTTTCGGTGTTGTTCTGTTGGAGATTATAACCGGTAGGAAAGCAATAGACAGTTC 957
Query 969 AAGATCTACTGGAGAACAGAATCTAGTCGCATGGGCAAGGCCTTTGTTTAAAGACAGGAG 1028
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 958 AAGATCCACTGGAGAACAGAATCTAGTTGCATGGGCTAGGCCTTTGTTTAAAGACAGGAG 1017
Query 1029 GAAATTCTCTCAGATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCGCGAGGGTTATA 1088
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 GAAATTCTCTCAAATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCGCGAGGGTTGTA 1077
Query 1089 CCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAGCAGCCAAATCTTAGACCTCTCAT 1148
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1078 CCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAACAGCCAAATCTTAGACCTCTCAT 1137
Query 1149 TGCTGACGTCGTCACTGCACTTTCTTACCTCGCCTCCCAAAAGTTTGATCCTCTGGCTCA 1208
||| ||||| ||||||||||||||||||||||| ||||| ||||| |||||| |||||||
Sbjct 1138 TGCGGACGTGGTCACTGCACTTTCTTACCTCGCTTCCCAGAAGTTCGATCCTTTGGCTCA 1197
Query 1209 GCCAGTCCAAGGATCCCTTTTCGCTCCAGGGACTCCACCTAGATCAAAGAGGGTCTGAAA 1268
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1198 GCCAGTCCAAGGATCCCTTTTCGCTCCCGGGACTCCACCTAGATCAAAGAGGGTCTGAAG 1257
Query 1269 ATAATCCCGAGAACCGCAATGCTGTGTAAGTTATGTAGCTTAAACCCATTCCGTGCTGTC 1328
|||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||
Sbjct 1258 ATAATCCCGAGAACCGCAATGCTGTGTAAGTTATTTAGCTTAAACCCATACTGGGCTGTC 1317
Query 1329 TTTCTTGGAG-AGGAAAGGTGGATGATTTTCAGACTAAGTGTG-AATGTATGGCTTAAGA 1386
||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1318 TTTCTTG-AGGAGGAAAGGTGGATGATTTTCAGACTAAGTGTGGAAAGTATGGCTTAAGA 1376
Query 1387 GCTACTTGTAGATATGTGTAAGAAGAGATAGATTCATATAGAGGCCGGTTTATAATGTTG 1446
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GCTGCTTGTAGATATGTGTAAGAAGAGATAGATTCATATAGAGGCCGGTTTATAATGTTG 1436
Query 1447 TTATAGGTGATGTTGTTTAATGTAATGTTTATTGAGCGCTTGCTTTCAAATGTGACAATT 1506
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 1437 TTATAGGTGATGTTGTTTAATGTAATGTTTATTGAGCACTTGCTCTGAAATGTGACAATT 1496
Query 1507 TCTCATTATTGTACTGAGGATGTCTGCTTCGATTCCAAAGTTATTGTATAAATATTAAAG 1566
||||||||||||| |||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 1497 TCTCATTATTGTATTGAGGATGTCTGTTTTGATTCCAAAGTTATTGTATAACTATTAAAA 1556
Query 1567 TACTATAGTTTTC 1579
|||||||||||||
Sbjct 1557 TACTATAGTTTTC 1569
> Ahg470821 jgi|Araly1|470821|fgenesh2_kg.1__775__AT1G07870.1
Length=1690
Score = 368 bits (199), Expect = 6e-101
Identities = 547/715 (77%), Gaps = 24/715 (3%)
Strand=Plus/Plus
Query 430 ATCAAGCAACTTGATCATAAT-GGTTTACAAGGAAACAGGGAGTTCCTCGTCGAGGTTCT 488
|||||||||||||| | |||| || || ||||| | |||||| || | || ||||| ||
Sbjct 578 ATCAAGCAACTTGACCGTAATGGGGTT-CAAGGTATCAGGGAATTTGTTGTTGAGGTACT 636
Query 489 CATGT-TGAGTCTT-CTTCATCACCCGAATCTTGTTAA-CTTAATAGGATATTGTGCTGA 545
| | | |||||| | | | || |||||||| || || ||| || || | |||||||||
Sbjct 637 GA-CTCTAAGTCTTGC-TGACCATCCGAATCTCGTGAAGCTT-ATTGGGTTTTGTGCTGA 693
Query 546 TGGAGATCAAAGGCT-TCTAGTCTACGAGTACATGCCCCTAGGTTCACTTGAAGATCATT 604
|| ||||| || || | | ||||||||||| ||||| | ||| || ||||||||||||
Sbjct 694 GGGTGATCAGAGACTAT-TGGTCTACGAGTATATGCCGCAAGGATCTCTTGAAGATCATC 752
Query 605 TGCACGACATTTCAC--CTGGTAAGCAGCCACTTGACTGGAACACCAGAATGAAAATAGC 662
| || | || || | ||||||| | || ||||| ||||||||| | |||||||||||
Sbjct 753 TACATG--ATCTCCCTTCTGGTAAAAAACCTCTTGATTGGAACACCCGGATGAAAATAGC 810
Query 663 TGCCGGTGCTGCAAAAGGTTTGGAGTATCTGCATGACAAAACCATGCCTCCAGTGATCTA 722
|| ||||| |||| |||||| |||||||||||||||| || | ||| |||||||| ||
Sbjct 811 AGCTGGTGCAGCAAGAGGTTTAGAGTATCTGCATGACAGAATGACGCCCCCAGTGATTTA 870
Query 723 TCGAGA-TTTGAAATGCTCAAATATTTTGCTCGATGATGATTA-CTTTCCAAAGCTATCC 780
||||| || ||||| || ||||||||||| | ||| || || | ||| ||| |||||
Sbjct 871 CCGAGACCTT-AAATGTTCGAATATTTTGCTTGGTGAAGACTATCATTCGAAA-CTATCT 928
Query 781 GACTTCGGGTTGGCTAAACTTGG-CCCAGTTGGGGACAAGTCTCATGTGTCCACTCGGGT 839
||||| || ||||||||| | || || || ||||| || | ||||| ||||| ||||
Sbjct 929 GACTTTGGATTGGCTAAAGTAGGACCAAG-CGGGGATAAAACCCATGTCTCCACAAGGGT 987
Query 840 TATGGGAACATACGGATACTGTGCTCCCGAGTATGCAATGACAGGCCAGCTAACACTCAA 899
||||||||||||||||||||||||||| || || || ||||| || ||||| ||| | ||
Sbjct 988 TATGGGAACATACGGATACTGTGCTCCTGACTACGCTATGACTGGTCAGCTCACATTTAA 1047
Query 900 ATCAGACGTTTACAGCTTCGGTGTTGTTCTGT-TGGAGATTATAACTGGTCGGAAAGCAA 958
||| || | ||||| || || || || || | | ||| |||| || || |||||||||
Sbjct 1048 ATCCGATATATACAGTTTTGGAGTCGTCCT-TCTCGAGCTTATCACCGGAAGGAAAGCAA 1106
Query 959 TAGACAGTTCAAGATCTAC-TGGAGAACAGAATCTAGTCGCATGGGCAAGGCCTTTGTTT 1017
| |||| | ||| | | | | ||| || ||| | || | ||||||| |||| |||||
Sbjct 1107 TTGACAATACAAAAACG-CGTAAAGATCAAAATTTGGTTGGATGGGCACGGCCGTTGTTC 1165
Query 1018 AAAGACAGGAGGAAATTCTCTCAGATGGCTGATCCAATGCTTCAAGGTCAATACCCTCCG 1077
|||||||||||||| ||| | | |||| ||||||| ||||||| || ||||||||
Sbjct 1166 AAAGACAGGAGGAACTTCCCGAAAATGGTTGATCCATTGCTTCAGGGACAATACCCGGTT 1225
Query 1078 CGAGGGTTATACCAAGCACTCGCTGTAGCAGCGATGTGCGTACAAGAGCAGCCAA 1132
|||| | ||||||||||| || | |||| |||||||| |||||||||||||
Sbjct 1226 AGAGGACTGTACCAAGCACTAGCAATTTCAGCAATGTGCGTTCAAGAGCAGCCAA 1280
> Ahg950010 jgi|Araly1|950010|scaffold_801897.1
Length=211
Score = 207 bits (112), Expect = 1e-52
Identities = 129/137 (94%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 102 GAAGAAGAAGAAGATCGTGAGAAGCTTAATGGGTTGGATCCCGTGTTCTGGGAAATCGAG 161
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGAAGAAGAAGATC--GAGAAGCTTAATGGGTTGGATCCCGTGTTCTGGGAAATCGAG 58
Query 162 TGGGAGGAATAAGACAAGGAGGAACGGTGACCACAAACTCGACAGGAAGTCTTCTGATTG 221
||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 59 CGGGAGGACTAAGACAAGGAGGAACGCTGACCAAAAACTCAACAGGAAGTCTTCTGATTG 118
Query 222 TTCTGTGTCTACTTCAG 238
|||||| ||||||||||
Sbjct 119 TTCTGTCTCTACTTCAG 135
> Ahg897059 jgi|Araly1|897059|Al_scaffold_0005_1025
Length=408
Score = 169 bits (91), Expect = 7e-41
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 130 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGTGGGAGGAATAAGACAAGGAGGAACGGT 189
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 1 ATGGGTTGGATCCCGTGTTCTGGGAAATCGAGCGGGAGGACTAAGACAAGGAGGAACGCT 60
Query 190 GACCACAAACTCGACAGGAAGTCTTCTGATTGTTCTGTGTCTACTTCAG 238
||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 61 GACCAAAAACTCAACAGGAAGTCTTCTGATTGTTCTGTCTCTACTTCAG 109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5