BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02830.1 Length=2783 Score E Sequences producing significant alignments: (Bits) Value Ahg932895 jgi|Araly1|932895|scaffold_400883.1 819 0.0 > Ahg932895 jgi|Araly1|932895|scaffold_400883.1 Length=675 Score = 819 bits (443), Expect = 0.0 Identities = 518/554 (94%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 75 CTCCTCCGCCATAACCAATCCTCACCATCACCACCGTCGCTGTTACGCCACAGCACCAGA 134 ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 121 CTCCTCCTCCATAACCAATCCTCACCACCACCACCGTCGCTGTTACGCCACCGCACCAGA 180 Query 135 GTCCAACCGGAAAA-CTAAATCCAATTCTTCTTTCACCAAGCTACTTCCGTCACTACCGC 193 | |||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 181 GCCCAACC-GAAAAGCTAAATCCAATTCTTCTCTCACCAAGCTACTCCCGTCACTACCGC 239 Query 194 AGCAACATTCACCTTCTCCTGCTTCAGTCTCCGCGACTCATTCTCTCTCTAGCCACTTCT 253 ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 240 AGCAACACTCACCTTCTCCTGCTCCAGTCTCCGCGACTCATTCTCTCTCTAATCACTTCT 299 Query 254 CCAATGTCGTAAGATGGATTCCAGATGGCTCGCTT-GAGTATTACGCTGATTTTGCCTCG 312 | || |||||||||||||||||||||||||| || ||||||||||||||||| |||||| Sbjct 300 CTAACATCGTAAGATGGATTCCAGATGGCTCG-TTGGAGTATTACGCTGATTTCGCCTCG 358 Query 313 AAGCTAGCTGAGGATGGTCGAATTGAGGACGTCGCTCTCATCGCCGAGACTTTGGCTGCA 372 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 359 AAGCTCGCTGAGGATGGCCGAATTGAGGACGTCGCTCTCATCGCCGAGACCTTGGCTGCA 418 Query 373 GAGTCCGGAGCTAATGTGGCTCGTTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 432 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 419 GAGTCCGGAGCTAATGTGGCACGCTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 478 Query 433 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTCGTTTACACTTTGAAGAGA 492 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 479 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTTGTTTACACTTTGAAGAGA 538 Query 493 ATTGAGAAGGTAGGAATTGCTCCATTGGACCTTGTCGATGATTCGTCTGTGAAATTAATG 552 |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 539 ATTGAGAAGGTAGGGATTGCTCCATTGGACCTCGTCGATGAAACGTCTGTGAAACTAATG 598 Query 553 AGGAAACAGTTTCGAGCAATGGCTAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATG 612 ||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||| Sbjct 599 AGGAAACAGTT-CGTTCAATGGCTAACTCTTTGCAAGTGGAGAAAGCTATTGACCTAATG 657 Query 613 GAGATACTTGCCGG 626 || || |||||||| Sbjct 658 GA-ATTCTTGCCGG 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105014805465 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5