BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02840.1 Length=1413 Score E Sequences producing significant alignments: (Bits) Value Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163 835 0.0 Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1 582 2e-165 > Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163 Length=930 Score = 835 bits (452), Expect = 0.0 Identities = 498/520 (96%), Gaps = 3/520 (1%) Strand=Plus/Plus Query 91 ATGACCTCAACCAATCCGGTGGTCGCCGAAGTAATACCGGCGGA-AACTTCTACAGATGC 149 ||||| |||| |||||||||||||||||||||| ||||| |||| || || ||||||||| Sbjct 1 ATGACTTCAAGCAATCCGGTGGTCGCCGAAGTAGTACCGTCGGAGAA-TTGTACAGATGC 59 Query 150 TACAGAGACGACGATTGCAACGACGGAAGCTGGTGAAGCACCGGAGAAGAAGGTGAGGAA 209 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 60 TACAGAGACGACGATGGCAACGACGGAAGCTGGGGAAGCACCGGAGAAGAAGGTGAGGAA 119 Query 210 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGAGAACACGACAAGTTTCT 269 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 120 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGCGAACACGATAAGTTTCT 179 Query 270 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 239 Query 330 GACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCaaaaaaaTGG 389 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 GACAGTCATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAGAAAAATGG 299 Query 390 GACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 449 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GACTTTAGCACATGTGCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 359 Query 450 AAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTCCTTTCCTACTCAAAT 509 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 AAAGGCATCGAAGAATGCTCAAATGTCGCTACACGTTTCCATGTCCTTTCCTACTCAAAT 419 Query 510 AAATAACCTGCCTGGATATACTCCATGGGATGATGATACATCTGCATTGTTAAACATTGC 569 |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| || Sbjct 420 AAATAACCTGCCTGGATATACTTCATGGGATGATGATACCTCTGCATTGCTAAACATAGC 479 Query 570 TGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACT 609 ||||||||||||||||||||||||||||||||||| ||| Sbjct 480 CGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGA-ACT 518 Score = 577 bits (312), Expect = 9e-164 Identities = 336/348 (97%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 625 GTTGATGTTGGATCAAATGACATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATCGGA 684 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 583 GTTGTTGTTGGATCAAATGGCATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATTGGA 642 Query 685 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTGAGACTGGCGAAACAAGCTCCCTCA 744 ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| Sbjct 643 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTAAGAGTGGTGAAACAAGCTCCCTCA 702 Query 745 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTGTTCGATCCT 804 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 703 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCT 762 Query 805 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTT 864 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 763 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTT 822 Query 865 TTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTTGAACCTACTTCT 924 |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 823 CTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAACCTGCTTCT 882 Query 925 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTAAGCTCTTAG 972 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 883 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTGAGCTCTTAG 930 > Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1 Length=1341 Score = 582 bits (315), Expect = 2e-165 Identities = 600/733 (82%), Gaps = 38/733 (5%) Strand=Plus/Plus Query 196 AAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGG-AGA 254 ||||| ||||||||| |||| || |||||||||||||| || || ||||| | ||| ||| Sbjct 107 AAGAAAGTGAGGAAACCTTATACCATCACCAAGTCTAGGGAAAGCTGGACAG-AGGAAGA 165 Query 255 ACACGACAAGTTTCTGGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGA 314 || || |||||||| ||||| |||||| |||||||||| |||||||| ||||| ||||| Sbjct 166 GCATGATAAGTTTCTTGAAGCACTTCAACTGTTTGATCGAGACTGGAAGAAGATTGAAGA 225 Query 315 TTTTGTTGGTTCAAAGACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAA 374 |||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||| Sbjct 226 TTTTGTTGGTTCAAAGACTGTGATTCAGATAAGGAGTCACGCCCAAAAATACTTTCTAAA 285 Query 375 GGTCCaaaaaaaTGGGACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGC 434 ||| || ||||| ||||| ||||||||||| ||||| ||| |||||||||||||||| || Sbjct 286 GGTTCAGAAAAACGGGACATTAGCACATGTGCCACCTCCTCGGCCTAAGCGCAAAGCAGC 345 Query 435 TCATCCATATCCTCAAAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTC 494 |||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||| ||| Sbjct 346 TCATCCGTATCCTCAAAAGGCATCGAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTC 405 Query 495 CTTTCCTAC-T--C-AAATAAATAACCTGCCTGGATATACTCCATGGGATGATGATACAT 550 ||| |||| | | |||| | || |||| |||| | || |||||||||||| | Sbjct 406 TTTTACTACTTCGCGAAAT-AGCGACATGCCGGGATTTGCTTCATGGGATGATG---C-- 459 Query 551 CTGCATTGTTAAACATTGCTGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACTC 610 || || || | ||| ||| | |||||| ||||| || ||||||||| ||||| Sbjct 460 CT-CAATG-----C--TGC--TAAACAGAGTTATTTCACCACAACATGAACTTGCTACTC 509 Query 611 TTTGTGGAGCAGAAGTTGATGTTGGATCAAATGACATGA-TAAGTGAAACTAGTCCTTC- 668 || |||||||||||| |||| |||||||||| | | | | ||| || | ||| ||||| Sbjct 510 TTCGTGGAGCAGAAGCTGATATTGGATCAAAGGGC-TTATTAAATGTTAGTAGCCCTTCT 568 Query 669 AGCATCTGGTATCGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTT-TGAGACTGG 727 | ||||| |||| |||||||||||| ||||| |||||| |||| | | || | | | || Sbjct 569 A-CATCTTGTATGGGAAGCTCAAGCCGAACAGTATCAGGTTCTGA-GATTGTAAAAAAGG 626 Query 728 CGAAACAAGC-TCCC--TCAATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCA 784 |||||| ||| |||| || | || ||| |||||||||||||||| ||||||||||||| Sbjct 627 CGAAAC-AGCTTCCCGTTC--TTCACGGTGTTCCTGATTTTGCTGAAGTTTATAACTTCA 683 Query 785 TTGGGAGTGTGTTCGATCCTGACAGC-AAAGGCCGCATGAAAAAGCTCAAGGAAATGGAT 843 |||||||||| || |||||||| | | | ||||| | || |||||||||||||||||||| Sbjct 684 TTGGGAGTGTCTTTGATCCTGA-AACGAGAGGCCACGTGGAAAAGCTCAAGGAAATGGAT 742 Query 844 CCTATAAATTTCGAAACTGTTTTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAAC 903 ||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||||| Sbjct 743 CCTATAAATTTTGAAACTGTTCTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAAC 802 Query 904 CCTGACTTT-GAA 915 ||||| ||| ||| Sbjct 803 CCTGA-TTTAGAA 814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52831169815 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5