BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02850.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487063 jgi|Araly1|487063|fgenesh2_kg.6__197__AT5G02850.1 2307 0.0
> Ahg487063 jgi|Araly1|487063|fgenesh2_kg.6__197__AT5G02850.1
Length=1556
Score = 2307 bits (1249), Expect = 0.0
Identities = 1475/1578 (93%), Gaps = 40/1578 (3%)
Strand=Plus/Plus
Query 2 TCTCTTTAATTATCTTCGATTTAAGAGATTCTTTCGCCGTCGGCGAAGATGCTACAGCAT 61
|||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TCTCTTAAATTACCTTGGATTTAAGAGATTCCTTCGCCGTCGGCGAAGATGCTACAGCAT 60
Query 62 CAGATCGTACAATCTCCGGCGAGATTAGGGTTAACAGGTCCTGGCTCTCCTTCCGTACAA 121
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 61 CAGATCGTACAATCTCCGGCGAGATTAGGGCTAACAGGTCCTGGTTCTCCCTCCGTACAA 120
Query 122 AATCCGACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCCAACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 180
Query 182 CAACAGATCCAACAACAGCCTAATCTACTTCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 241
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CAACAGATCCAACAACAACCTAATCTACTCCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 240
Query 242 GCCTCAGCTTCGGCGGCTGTTTCATCCTCCGCCTTGCTATCGCTCCTTCCTCCATTACCG 301
||||||||| | ||||| ||||||||||||| |||||||| |||||||| |||||||||
Sbjct 241 GCCTCAGCTGCATCGGCTATTTCATCCTCCGCTTTGCTATCTCTCCTTCCGCCATTACCG 300
Query 302 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACATCTAAGCTCTTCGACGTCTCT 361
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACGTCTAAGCTCTTCGACGTCTCT 360
Query 362 CCCAATCGAGCTATCTGGCTCTCAGCTTTCCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 421
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CCCAATCGAGCTCTCTGGCTCTCAGCTTTTCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 420
Query 422 CACTCGTTACCACCTCCGCCGCCGCTTGAAAACCCTAGTCCTTCATCCACGAAGGAGATC 481
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 CACTCGTTACCACCGCCTCCGCCGCTTGAAAACCCTAATCCTTCATCCACGAAGGAGATC 480
Query 482 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTTACAGAGCTTCAAGAG 541
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 481 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTAACTGAGCTTCAAGAG 540
Query 542 ATCCTCGATCTGCAAGACGCGAAGCAGAAGGTGGCGCGTGAGATCAAATCCAAAGATTCA 601
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 541 ATCCTCGATCTGCAAGACGCGAAGCAAAAGGTCGCGCGTGAGATCAAATCCAGAGATTCA 600
Query 602 TCTCTTCTCGCTTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 661
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCTTCTCGCGTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 660
Query 662 GACGACTACTCCGATTACCGCAAACCAAAACGAAGCAAAA-T-TGA-AGAAGATGACGAA 718
|||||||||||||| || |||||||||||||||||||||| | ||| ||||| || |||
Sbjct 661 GACGACTACTCCGACTATCGCAAACCAAAACGAAGCAAAATTGTGAGTGAAGAAGAAGAA 720
Query 719 GACAATGATAATGAGTCTTCTTCTTCTTCAACCACAGTTTCGTCTCAGCTCAAGTTAAAG 778
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 721 GACAATGATAATGAGTCTTCTTCTTCTTCGACCACAGTTTCGTCTCAGCTCAAACTAAAG 780
Query 779 GACATATTAGCTTACGCTCACAAGATTAGCTACACCACATTTGCTCCGCCGGAATTCGGT 838
||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 781 GACATTTTAGCTTACGCTCATAAGATCAGCTACACCACATTTGCTCCACCGGAATTTGGT 840
Query 839 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 900
Query 899 GCTTCCCAGCTCTACACTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 958
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCTTCTCAGCTCTATGCTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 960
Query 959 ATGGAGAAGAAGGTTGAAGCACTGATTGAG---CCACCACCACCACCAGAAGCTATGGAT 1015
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 961 ATGGAGAAGAAGGTTGAAGCACTCATTGAGCCACCACCACCACCACCAGAAGCTATGGAT 1020
Query 1016 ATATCTGCTATTCACAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1075
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCTCTGCAATTCATAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1080
Query 1076 GGAATGCCAGTCGAATTGCCTAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGC 1135
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGAATGCCGGTCGAATTACCAAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGT 1140
Query 1136 GACCCAGTTGTGTTACCGCCACTGGAGTCAATTGCTGCACCTAGAGCAGAGGATCATCAA 1195
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 1141 GACCCAGTTGTGTTACCGCCATTGGAGTCAATTGCTGCACCTAGAGCGGAGGATCAGCAA 1200
Query 1196 CATATGAGACCTTCTCAGGGACTCCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1255
|||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 CATATGCGACCTCCTCAGGGACTTCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1260
Query 1256 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1320
Query 1316 GATGATGAGGATTAATCAACATTGTGATTGATGGTTCTCTGTAAGGTAATGATTTGACCA 1375
||||| ||||||||||||||||||| | || | | | | | || |||||
Sbjct 1321 GATGACGAGGATTAATCAACATTGT-A---AT--T-----G-A---T---G-TT-GACCA 1360
Query 1376 ATGTTACTGCTAATTCTTGATCAAGTTTGA-T----TTT-CTACTTGGTTTCGTTTTGTT 1429
|||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1361 ATGTTACTGCTAATTCTTGATCAAGTTTGAGTGAAATTTTCTACTTGGTTTCGTTTTGTT 1420
Query 1430 T-AGCAGTGCCTTTATGTGGATAGATGTTA-GTA-TAT--GCTTCATCGTTATCAGTATC 1484
| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1421 TTAGCAGTGTCTTTATGTGGATAGATGTTAAGTAGTATATGCTTCATCGTTATCAGTATC 1480
Query 1485 TTTGATGTATCAA-AGTTGTTTCTTACGAAAACCCTGGATTCTAATTCAGTTTACAGAAT 1543
||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1481 TTTGATGTATCAAGA-TTGTTTCTTACGAAA-CCCTGGATTCTAATTCAGTTTACAGAGT 1538
Query 1544 TATTGGTTATCTTTTTTC 1561
||||||| ||||||||||
Sbjct 1539 TATTGGTCATCTTTTTTC 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5