BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03140.1 Length=2427 Score E Sequences producing significant alignments: (Bits) Value Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1 3568 0.0 > Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1 Length=2411 Score = 3568 bits (1932), Expect = 0.0 Identities = 2254/2405 (94%), Gaps = 39/2405 (2%) Strand=Plus/Plus Query 44 TTTTGTATGATTGTATCAGTGAGAGAACCCAACAACCTCCAAA---TT----CTTCCTCA 96 |||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 22 TTTTGTATGATTGTATCAGT--GAGAACCCAACAACCTCCAAATTCTTCCAACTTCCTCA 79 Query 97 GATCTCCAAAGGAATCCAATGAAAAACT-TAAACTAATGTTGAAACTTCCTCCGAGATTC 155 | | | |||||||||||||||||||| | || || |||||||||| |||||||||||||| Sbjct 80 GGT-TTCAAAGGAATCCAATGAAAAA-TATATACAAATGTTGAAAATTCCTCCGAGATTC 137 Query 156 TTCTCTGTTTACTCAACTCTCATCCACATTCTTGCCTCCTTCCTCTGCTCCTCCGACGTC 215 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 138 TTCTCTGTTTACTCAACTCTCATCCACATTATTGCCTCCTTCCTCTGCTCCTCCGACGTC 197 Query 216 AGAGGCGATTTCCCGGCGACGAGATTCGATCTCGGAACGTTGACTCTCTCAAGCCTCAAA 275 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 198 AGAGGCGATTTTCCGGCGACGAGATTCGATCTCGGAACGTTGACTCTCTCAAGTCTCAAG 257 Query 276 CTTCTCGGCGATGCTCATCTCAACAACGGAACTATTAAGCTCACTCGTGAACTCTCTGTT 335 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 258 CTTCTCGGGGATGCTCATCTCAACAACGGAACTATTAAGCTCACTCGTGAACTCTCTGTT 317 Query 336 CCCACTTCCACCGCCGGAAAAGCTCTTTATGGGAAACCGGTAAAATTCCGGCACCCGGAA 395 ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| Sbjct 318 CCCACTTCCACCGCCGGGAAAGCTCTTTATGGAAAACCGGTTAAATTCCGGCACCCGGAG 377 Query 396 ACTAAATCTCCGGCGAGTTTCACTACTTACTTCTCCTTCTCGGTAACGAATCTCAATCCT 455 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 378 ACTAAATCTCCGGCGAGTTTCACCACTTACTTCTCCTTCTCGGTAACGAATCTCAATCCT 437 Query 456 TCCTCAATTGGCGGTGGATTAGCTTTCGTAATCTCCCCTGATGAAGATTACTTAGGATCC 515 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 438 TCCTCAATTGGCGGTGGGTTAGCTTTCGTAATCTCCCCTGATGCAGATTACTTAGGATCC 497 Query 516 ACCGGTGGATTTCTCGGTCTAACCGAAGAAACCGGATCCGGGTCGGGTTTTGTGGCGGTT 575 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 GCCGGTGGATTTCTCGGTCTAACCGAAGAAACCGGATCCGGGTCGGGTTTTGTGGCGGTT 557 Query 576 GAATTCGATACGTTAATGGATGTGCAATTCAAAGACGTTAACGGGAACCACGTGGGATTG 635 |||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 558 GAATTCGATACGCTGATGGATGTACAATTCAAAGACGTAAACGGGAACCACGTGGGATTG 617 Query 636 GATCTAAACGCCGTCGTTTCAGCCGCGGTAGCCGATTTGGGAAACGTCGACATCGATCTC 695 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 618 GATCTAAACGCCGTCGTTTCAGCCGCGGTAGCCGATTTAGGAAACGTCGACATCGATCTC 677 Query 696 AAGAGCGGAAACGCCGTGAATTCATGGATCACTTATGACGGGTCGGGTCGGGTTTTAACA 755 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 678 AAGAGCGGAAACGCCGTGAATTCATGGATCACTTATGACGGGTCGGGTCGAGTTTTATCA 737 Query 756 GTTTACGTCTCTTACTCAAACTTGAAACCTAAATCGCCGATTTTGTCGGTTCCTCTCGAT 815 ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| Sbjct 738 GTTTACGTCTCTTACTCAAACGTGAAACCTAAATTGCCGATTTTGTCGGTTCCTCTTGAT 797 Query 816 CTTGATCGTTACGT-AAGCGATTCAATGTTTGTTGGATTCTCTGGATCAACACAAGGAAG 874 |||||||||||||| || |||||||||||| || |||||||||||||||||||||||||| Sbjct 798 CTTGATCGTTACGTGAA-CGATTCAATGTTCGTCGGATTCTCTGGATCAACACAAGGAAG 856 Query 875 CACTGAGATTCACAGTGTCGATTGGTGGAGCTTTAGTTCATCTTTCGAAGAATCATCGGA 934 ||| |||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 857 CACAGAGATTCACAGTATCGATTGGTGGAGCTTTAGTTCATCTTTC---GATTCATCGGA 913 Query 935 ATCACCACCGCCGATGCCTAATTCTCCTCCTCCGTCGTCACCGTC-T--TCATCAATCAC 991 ||| |||||||||||| |||||||||||||||| ||||| ||||| | |||| ||||| Sbjct 914 ATCTCCACCGCCGATGTCTAATTCTCCTCCTCCCTCGTCTCCGTCGTCAACATCGATCAC 973 Query 992 ACCATCCCTATCCACCGTCCGG-AGAAAAACCGCCGATCCATCGTCCTCTTGCCGTAACA 1050 ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 974 ACCATCCGTATCCACCGTCCGGAAG-AAAACCGCCGATCCATCGTCCTCTTGCCGTAACA 1032 Query 1051 AACTCTGTAAAAAATCACCAGCCGCCGTCGCCGGAGTAGTAACCGCCGGAGCATTTTTCT 1110 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1033 AACTCTGTAAAAAATCACCAGCCGCCGTCGCCGGAGTTGTAACAGCCGGAGCATTTTTCT 1092 Query 1111 TAGCATTATTCGCCGGAGTGATAATCTGGGTTTACTCTAAAAAGATCAAATACACTCGAA 1170 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || || Sbjct 1093 TAGCACTATTCGCCGGAGTGATAATCTGGGTTTACTCCAAAAAGATCAAATACAATCAAA 1152 Query 1171 AGTCTGAATCTTTAGCATCGGAAATAATGAAATCGCCGAGAGAGTTCACTTACAAGGAGC 1230 ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1153 AGTCTGAATCTTTCGCATCGGAAATCATGAAATCGCCGAGAGAATTCACTTACAAGGAGC 1212 Query 1231 TGAAATTAGCCACCGACTGTTTCAGCTCATCGAGAGTCATCGGAAACGGAGCATTCGGCA 1290 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1213 TGAAATTAGCCACCGACTCTTTCAGCTCATCGAGAGTCATCGGAAACGGAGCATTTGGCA 1272 Query 1291 CCGTCTACAAAGGAATCTTACAAGATTCCGGCGAAATTATCGCAATCAAAAGATGCAGCC 1350 ||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||| Sbjct 1273 CCGTCTATAAAGGAATCTTACCGGATACCGGCGAAATCATCGCAATCAAAAGATGCAGCC 1332 Query 1351 ACATTTCTCAAGGAAACACAGAATTCTTATCGGAATTATCTCT-AATCGGAACCCTCCGT 1409 | ||||||||||| ||||| ||||||||||| |||||||| || ||||||||| |||||| Sbjct 1333 ATATTTCTCAAGGGAACACCGAATTCTTATCTGAATTATC-CTTAATCGGAACACTCCGT 1391 Query 1410 CACCGGAATCTTCTCCGTCTTCAAGGCTATTGCAGAGAAAAAGGCGAAATTCTGTTAATT 1469 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1392 CACCGGAATCTTCTCCGTCTTCAAGGCTACTGCAGAGAAAAAGGCGAAATTTTGTTAATT 1451 Query 1470 TATGATCTAATGCCTAATGGATCACTTGATAAAGCACTCTACGAGTCTCCGACTACATTA 1529 || ||| ||||||||||||||||||| ||||||||||| |||||||||||||| || ||| Sbjct 1452 TACGATTTAATGCCTAATGGATCACTCGATAAAGCACTTTACGAGTCTCCGACGACGTTA 1511 Query 1530 CCCTGGCCTCACCGGAGAAAAATACTTCTTGGAGTCGCTTCTGCTTTGGCTTATTTGCAT 1589 || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1512 CCATGGCCTCACCGGAGAAAAATACTTCTCGGAGTCGCTTCCGCTTTGGCTTATTTGCAT 1571 Query 1590 CAAGAGTGCGAGAATCAGATCATTCACCGTGATGTTAAAACAAGTAACATTATGCTCGAC 1649 || |||||||||||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 1572 CAGGAGTGCGAGAATCAAATTATTCACCGTGATGTCAAAACAAGTAACATTATGCTCGAC 1631 Query 1650 GCGAATTTTAATCCGAAGTTAGGTGATTTTGGACTCGCGAGGCAAACGGAGCACGATAAA 1709 || |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1632 GCAAATTTTAATCCGAAATTAGGCGATTTTGGACTCGCGAGGCAAACGGAGCACGATAAA 1691 Query 1710 TCGCCGGACGCAACCGCCGCCGCTGGAACAATGGGGTATTTAGCGCCGGAGTATTTGTTA 1769 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1692 TCGCCGGACGCAACCGCCGCTGCTGGAACAATGGGGTATTTAGCGCCGGAGTATTTGTTA 1751 Query 1770 ACCGGTCGAGCGACGGAGAAAACCGACGTTTTTAGCTACGGAGCCGTTGTTTTAGAAGTA 1829 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1752 ACCGGTCGAGCGACGGAGAAAACCGACGTTTTCAGCTACGGAGCCGTTGTGCTAGAAGTA 1811 Query 1830 TGCACTGGTAGAAGACCCATAACCCGACCCGAACCGGAACCCGGTTTAAGACCCGGTTTG 1889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1812 TGCACTGGTAGAAGACCCATAACCCGACCCGAACCGGAACCCGGTTTAAGACCCGGTTTG 1871 Query 1890 AGGTCGAGTTTGGTAGATTGGGTTTGGGGTTTGTATAGAGAAGGGAAGTTATTGACCGCC 1949 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1872 AGATCGAGTTTGGTAGATTGGGTTTGGGGTTTGTATAGAGAAGGGAAGCTATTGACGGCG 1931 Query 1950 GTGGACGAGCGGTTGAGTGAGTTTAACCCGGAGGAGATGAGTCGGGTTATGATGGTGGGC 2009 |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||| Sbjct 1932 GTGGACGAACGGTTGAGTGAGTTTGACCCGGAGGAGATGAATCGGGTTTTGATGGTGGGC 1991 Query 2010 CTTGCTTGTTCACAACCCGATCCGGTCAC-CAGGCCCACTATGAGAAGTGTGGTTCAGAT 2068 ||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||| Sbjct 1992 CTTGCTTGTTCTCAACCCGATCCGGTGACTC-GGCCCACTATGAGAAGTGTGGTTCAGAT 2050 Query 2069 TCTTGTTGGTGAAGCTGATGTGCCGGAAGTTCCGATTGCGAAACCGTCGTCGTCGATGAG 2128 |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||| Sbjct 2051 TCTTGTTGGTGAAGCTGATGTGCCGGAAGTTCCGGTTGCGAAGCCGTCTTCGTCAATGAG 2110 Query 2129 TTTTAGTACGTCGGAGTTATTGCTTACGTTACAAGACAGTGTATCGGACTGTAATGAAGT 2188 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2111 CTTTAGTACGTCGGAGTTATTGCTTACGTTACAAGACAGTGTATCGGACTGTAACGAAGT 2170 Query 2189 TTTGGCTCCGATTTCAACGACTTCTTGTTCCTCGTCGGAACACGACATCTTCATTGTCGG 2248 |||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||| Sbjct 2171 TTTGGCTCCGATCTCAACGACTTCTT---CGTCGTCGGAACATGACATCTTCATTGTCGG 2227 Query 2249 CAAGGACCGATCGGTTTGAAA-TAA-ATT-ATTCAAATGACAA-TTAAT-ATAAAATACG 2303 |||||| |||||||||| ||| ||| ||| ||| ||||||||| ||||| ||||||| || Sbjct 2228 CAAGGATCGATCGGTTTAAAAATAATATTTATTTAAATGACAAATTAATTATAAAATTCG 2287 Query 2304 AAGCACAATTTTGTACGtaaattgaaaataaacaaaaaccaaaaac---atactaattgt 2360 ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| | Sbjct 2288 AAGCAAAATTTTGTACGTAAATTGAAAATAAACAAAATCCAAAAACTTTATACTAATTTT 2347 Query 2361 aaaaa-tGTTGGATTTACATGTATATTTTCTGTTCGATTTTAATAATTCTTGGTTTTGGA 2419 ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||| Sbjct 2348 AAAAAATGTTGGAAGTATATGTATATTTTCTGTTCGATTT-AATAATTCTTGGTTTTGGA 2406 Query 2420 ACCTC 2424 ||||| Sbjct 2407 ACCTC 2411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91454678245 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5