BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03200.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg487092 jgi|Araly1|487092|fgenesh2_kg.6__226__AT5G03200.1 1615 0.0 Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1 388 4e-107 > Ahg487092 jgi|Araly1|487092|fgenesh2_kg.6__226__AT5G03200.1 Length=1212 Score = 1615 bits (874), Expect = 0.0 Identities = 1096/1200 (91%), Gaps = 27/1200 (2%) Strand=Plus/Plus Query 90 TATCAACTGAATCACCGAAAAACCTCACCttttttctttttCCGATCATGGGGAATCTGA 149 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 25 TATCAACTGAATCA-CGAAAAACCTCACCTTTTTTCTTTTCCCGATCATGGGGAATCTGA 83 Query 150 TCAGTTTGATCTTCTGCTGCGGGAGAAGGCAGAGGAGCAATATTCCTCCGGCGATGGAAA 209 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 84 TCAGTCTGATCTTCTGCTGCGGGAGAAGGCGGAGGAGCAATATTCCTCCGGCGATGGAAA 143 Query 210 CGGCTCCTCTTGAACTCCCACCGAACAGATTTGTATTCGCCGCCGTGCCACCATATCTGA 269 |||||||||||||||||||| |||| ||||||||||||||||| | || || ||||||| Sbjct 144 CGGCTCCTCTTGAACTCCCAGCGAATAGATTTGTATTCGCCGCGGCACCGCCGTATCTGA 203 Query 270 ACCCTAACCCTAACTACGTTGACCAGTATCCAGGTAACTGCCTTCCTCCGCCAGTAACTG 329 ||||||||||||||||| |||| |||||||||||| |||||||||||||||| | || Sbjct 204 ACCCTAACCCTAACTACTTTGATCAGTATCCAGGTTACTGCCTTCCTCCGCC-G---CT- 258 Query 330 AGCCGCCGATGCTACCGTACAATTTCAACCATTTGCATCACTATCCTCCCAACAGTTACC 389 ||||| | ||| || |||| | || |||| || ||||| ||||||||| ||||||||| Sbjct 259 -GCCGCAGCCGCTGCCTTACAGTCTCCACCACTTACATCAATATCCTCCCCACAGTTACC 317 Query 390 AACTACCTCATCCTTTGTTTCACGGCGGTAGATACCCTATACTGCCGCCTCCTACGTACG 449 ||||||||||||||||| ||| |||||||||| |||| || || |||||| | |||||| Sbjct 318 AACTACCTCATCCTTTGATTCCCGGCGGTAGACACCCGATGCTACCGCCT-C--CGTACG 374 Query 450 TCCACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGAAGACTTTAACGC 509 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 375 TCCATGAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGGAGACTTTAAGGC 434 Query 510 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCATCCA 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 435 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCAGCCA 494 Query 570 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAGAG 629 |||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||| Sbjct 495 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGAAGAAGAAGGCAATCTTAGAG 554 Query 630 CTACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAGAAGGACTTGGTCAGA 689 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 555 CAACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAAAAGGACTTGGTCAGA 614 Query 690 AGTTCATACAATCATCTGGAACGGGTATAGACTTGACGGCGTTTAAAGATTCCGAGCTAT 749 ||||||||||| |||||||||||||||| ||| ||||||| ||| |||||||||||||| Sbjct 615 AGTTCATACAACCATCTGGAACGGGTATTGACCTGACGGCATTTGCAGATTCCGAGCTAT 674 Query 750 TCAAGGAGGTGGATACAGATGTCTTCCCGTTGGCGGTTAAGGCGGAGGCAACTCCAGCGG 809 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 675 TCAAGGGGGTGGATACAGATGTCTTCCCGTTGGCGATTAAGGCGGAGGCAACTCCAGCGG 734 Query 810 AAGAAGGAAAGTCTGGTTCCACCAATGTGCAGATTACTCAAGTGGTGTATACCAAGGAGA 869 ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 735 AAGAAGGAAAGTCGGGTTCCATGAATGGGCAGATTACTCAAGTGGTGTATACCAAGGAGA 794 Query 870 AAGGAGAGATTAAAATAGAAGTGGTGAAGCAGATACTATGGGTGAATAAGAGGAGGTATG 929 ||||||||||||| |||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 795 AAGGAGAGATTAAGATAGAAGTGGTGAAGCAGATACTATGGGTGAATAGGATGAGATATG 854 Query 930 AGCTGCTTGAGATTTATGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAAT 989 || ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 855 AGTTGCGGGAGATTTATGGGATTGAGAACACGGTTGATGGTTGCGACGAGGGAAAGGAAT 914 Query 990 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 974 Query 1050 TGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGCCCAGTTTGCAGAC 1109 |||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| Sbjct 975 TGTGCAGCGGGTGCGCAAAAGCGTTAAGGTTTCAGACACATCTGTGTCCAGTTTGCAGAC 1034 Query 1110 AACCTGTTGAGATGCTTTTGGAGATTA----A--C--AA----GAACGGATG-AAATGGA 1156 ||||||| |||| |||||||||||||| | | || ||| || || ||||||| Sbjct 1035 AACCTGTAGAGAGGCTTTTGGAGATTACGGTAGACGGAAACAAGAAAGG-TGGAAATGGA 1093 Query 1157 GATGGAGAATGAACAAATTTAGTTAAGCAATCGACTTGTGTAATATATGCCATGCTTAAT 1216 |||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1094 GATGGAGATT-AACAAATTTAGTTAAGCAATAGACTTGTGTAATATAAGCCATGCTTAAT 1152 Query 1217 TAAGACGTAAAACGTTATGGTTCAATATAT-TAT-AAGTGGAAACTGAGTTCTTAAATAG 1274 |||||| ||||| ||||||||||||||||| ||| || |||||||||||||||||| ||| Sbjct 1153 TAAGACATAAAATGTTATGGTTCAATATATATATCAATTGGAAACTGAGTTCTTAATTAG 1212 > Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1 Length=1582 Score = 388 bits (210), Expect = 4e-107 Identities = 577/741 (78%), Gaps = 77/741 (10%) Strand=Plus/Plus Query 452 CACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAA-GAAGACTTTAACGCT 510 ||||||||||||||||||||||||||||| |||||||| ||||| || ||| | | ||| Sbjct 666 CACCAGAAAGCCGTCACGATTCGTAACGACGTTAATCTTAAGAAAGA-GACCCTCAGGCT 724 Query 511 C-ATACCCGACCCGGAGAATCCGAATCGACTT-CTTGTCTCCTTCACATTTGATGCATCC 568 | |||||||||||| |||||| ||| ||| || ||||||||||| ||||||||| || Sbjct 725 TGA-ACCCGACCCGGATAATCCGGGTCG-CTTTCTCGTCTCCTTCACGTTTGATGCAACC 782 Query 569 ATGC-CCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAG 627 | | |||||||||| | || |||||||||||| |||| | ||| || ||||| | Sbjct 783 GT-CTCCGGAAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAATCTCAC 841 Query 628 AGCTACAAAGGAAGATACTT-TGCCTCCAATCACTTTTGATTTCGGAGAA-GGACTTGGT 685 ||| ||||||||||||| || |||| |||||||| | ||||||| |||| ||||||||| Sbjct 842 AGCGACAAAGGAAGATA-TTCTGCCACCAATCACCCTAGATTTCG-AGAAAGGACTTGGT 899 Query 686 CAGAAGTTCATACAATCATCTGGAACGGGTATAGACTTGACGG-CGTTT-A--AAGATTC 741 |||||||| | |||||||||||| | ||||||||||| ||| | ||| | ||| || Sbjct 900 CAGAAGTTTAAACAATCATCTGGTTCTGGTATAGACTTTTCGGTC-TTTGAGGAAG-TT- 956 Query 742 CGAGCTATTCAAGGAGGTGGATACAGATGTCT-TCCCGTTGGCGGTTAAGGCGGAGGCAA 800 ||||| ||| ||| || | |||||||| ||| ||| |||||||||||||| || ||| Sbjct 957 -GAGCTGTTCGAGGCGGCGAATACAGATATCTATCCA-TTGGCGGTTAAGGCAGAAGCAG 1014 Query 801 CTCC---AGC-G-GAA-GAAG--GAAAG-TCTGGT-TCCACCAAT--G--TGC--AGATT 844 |||| || | ||| |||| ||||| | ||| || | || | ||| ||||| Sbjct 1015 CTCCCTCAGGTGAGAATGAAGAAGAAAGGT-TGGGATCGAAGAAAAAGAATGCGCAGATT 1073 Query 845 ACTCAAGTGGTGTAT-ACCAAGGAGAAAGGAGAGATTAAAAT-AGAAGTGGTGAAGCAGA 902 ||||||| ||| ||| | ||||| |||||||||||||| || ||| ||||||||||||| Sbjct 1074 ACTCAAGCGGTTTATGAG-AAGGATAAAGGAGAGATTAAGATTAGA-GTGGTGAAGCAGA 1131 Query 903 TACTATGGGTGAAT--AAGAGGAGGTATGAGCTGCTTGAGATTTATGGGATTGAGAACAC 960 |||||||||| ||| || | || |||||| ||| |||||||||||||||| ||| || Sbjct 1132 TACTATGGGTTAATGGAACAAGA--TATGAGTTGCAGGAGATTTATGGGATTGGGAATAC 1189 Query 961 GGTTGA------TG-G--TTC--C-GATGA-G-----G----G--AAAGGAATGTGTTG- 995 ||||| || | ||| | ||||| | | | ||| |||||||| | Sbjct 1190 CGTTGAGGGCGATGAGGATTCAGCTGATGATGCTAATGATCCGGGAAAAGAATGTGT-GA 1248 Query 996 TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTATGTGTA 1055 ||||||||||||||||||| || || ||||||||||| ||| |||| ||||||||||| | Sbjct 1249 TATGCTTGTCTGAACCACGAGACACGACTGTTCTTCCATGCCGACATATGTGTATGTGCA 1308 Query 1056 GCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTG-TGCCC-AGTTTGCAGACAACC 1113 |||| ||||| |||| || |||||||||||||||| | ||||| | ||||||| ||||| Sbjct 1309 GCGGATGCGCTAAGGTATTGAGGTTTCAGACAAATC-GATGCCCGA-TTTGCAGGCAACC 1366 Query 1114 TGTTGAGATGCTTTTGGAGAT 1134 ||| || | |||||||||||| Sbjct 1367 TGTCGAAAGGCTTTTGGAGAT 1387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5