BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03290.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1 2423 0.0
Ahg928658 jgi|Araly1|928658|scaffold_301115.1 1227 0.0
> Ahg487101 jgi|Araly1|487101|fgenesh2_kg.6__235__AT5G03290.1
Length=1425
Score = 2423 bits (1312), Expect = 0.0
Identities = 1393/1431 (97%), Gaps = 10/1431 (1%)
Strand=Plus/Plus
Query 11 tctttctctctctcGAATAATAATTTTTCATTTGCTGCGTCCTTTTGGTGCTTGAAGCGA 70
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 TCTCTCTCTCTCTCGAATAATAATTTTTCATTTGCTGCGTCCTTCTGGTGCTTGAAGAGA 60
Query 71 TGACCATGGCAGCAAATCTAGCGCGACGGCTGATC---GGAAACCGATCGACTCAGATCC 127
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGACCATGGCAGCAAATCTCGCGCGACGGCTGATCGGAGGAAACCGATCGACTCAGATCC 120
Query 128 TTGGAGCCGTGAACTCTAGCTCAGGTGCGGCTAGTTCTGTCGCTAGGGCTTTCTGCTCCT 187
|||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 121 TTGGTGCTGTGAACTCTAGCTCAGGTGCGGCTACTTCCGTCGCTAGGGCTTTCTGCTCCT 180
Query 188 CCACCACTCCGATCACCGCAACTCTCTTCCCTGGCGATGGGATCGGTCCCGAGATCGCCG 247
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CCACCACTCCGATCACCGCAACTCTCTTCCCTGGTGATGGGATCGGTCCCGAGATCGCCG 240
Query 248 AATCTGTCAAAAAGGTGTTTACAACAGCTGGTGTACCAATTGAGTGGGAAGAACACTATG 307
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 241 AATCTGTCAAAAAGGTGTTTACAACTGCTGGTGTGCCAATTGAGTGGGAAGAACACTATG 300
Query 308 TTGGGACTGAGATAGATCCGAGAACACAGAGTTTCTTGACATGGGAAAGTCTCGAATCTG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGGACTGAGATAGATCCGAGAACACAGAGTTTCTTGACATGGGAAAGTCTCGAATCTG 360
Query 368 TGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCAATTGGGAAAGGTCACC 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCAATTGGGAAAGGTCACC 420
Query 428 GTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTT 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTT 480
Query 488 ACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCTCATTACCATCAGAGAAA 547
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 ACAGTCTTCCTGGTTACAAAACTCGTTACGATGACGTTGATCTCATTACCATCAGAGAAA 540
Query 548 ACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGTTAGAGGTGTGGTGGAAAGTC 607
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 ACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGTTAGAGGTGTGGTTGAAAGTC 600
Query 608 TTAAAATCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAGTATGCTTTTCTCTATGCCA 667
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTAAAGTCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAGTATGCGTTTCTCTATGCCA 660
Query 668 AGACTCATGGAAGAGAGAGAGTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGACTCATGGAAGAGAGAGAGTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTG 720
Query 728 ACGGTCTCTTTCTCAAGTGTTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATCACTTACG 787
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 ACGGTCTTTTTCTCAAGTGTTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATAACTTACG 780
Query 788 AGGAGGTCGTTATTGACAACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGGAGGTCGTTATTGACAACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATG 840
Query 848 TCTTGGTGATGCCAAACCTGTACGGTGACATTATTAGCGATCTGTGTGCCGGATTGGTTG 907
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 TCTTGGTGATGCCAAACCTGTACGGTGACATTATTAGTGATCTGTGTGCCGGATTGGTTG 900
Query 908 GAGGACTAGGATTGACTCCAAGTTGTAATATTGGAGAAGATGGTGTAGCCCTTGCTGAAG 967
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 901 GAGGACTAGGATTGACTCCAAGTTGTAATATCGGAGAAGATGGCGTAGCCCTTGCTGAAG 960
Query 968 CAGTTCACGGTTCTGCACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGTTCACGGTTCTGCACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGC 1020
Query 1028 TTCTGAGTGGAGTGATGATGTTGCGTCACCTGAAGTTCAACGAACAAGCAGAACAAATCC 1087
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 TTCTGAGTGGAGTGATGATGTTGCGTCACCTGAAGCTCAACGAACAAGCAGAACAAATCC 1080
Query 1088 ACAGTGCAATCATCAACACCATAGCAGAGGGCAAATACAGAACCGCGGATCTTGGAGGTA 1147
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 ACAGTGCAATCATCAACACCATAGCAGAGGGAAAATACAGAACCGCGGATCTTGGAGGTA 1140
Query 1148 GTTCGACCACCACGGAATTCACAAAGGCAATCTGTGATCATCTCTGAACATCGTAAAATC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 GTTCGACCACCACGGAATTCACAAAGGCAATCTGTGATCATCTCTGAACATCGTAAAGTC 1200
Query 1208 CAATTCTTTATCGAATCTTCTTTTGGGAGCCTTTTTTATAGCCTCGAATTCTTCTTGTTT 1267
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAATTCTTTATCGAATCTTCATTTGGGAGCCTTTTTTATAGCCTCGAATTCTTCTTGTTT 1260
Query 1268 TCTTGTTTTACGATTAGAATaaaagaaaaa-gcaaaaaaaCGGCTCTTCATGAGTTTTGA 1326
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1261 -CTTGTTTTACGATTAGAATAAAAGAAAAAAG-AAAAAAACGGCTCTTCATGAGTTTTGA 1318
Query 1327 AGTTATTGTTTCTGCCTTAAAATTTCTCTGCCGTAAGGCAAGAAGATTCATAACACTGGA 1386
||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 1319 AGTTATTATTTCTGCCTTAAAATTTCTTTGCCGTAAGGCAAGA---TTGATAACACTGGA 1375
Query 1387 AAAAGTGATGTTCTTTCTGAATCGATCAGAAGAATTTTGTTTTGTTGCTTG 1437
||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1376 AAA-GTGATGTTCTTTCTGAATCCATCAGAAGAATTTTGTTTTGTTGCTTG 1425
> Ahg928658 jgi|Araly1|928658|scaffold_301115.1
Length=1160
Score = 1227 bits (664), Expect = 0.0
Identities = 1008/1170 (86%), Gaps = 39/1170 (3%)
Strand=Plus/Plus
Query 60 GCTTGAAGCGATGACCATGGCAGCAAATCTAGCGCGACGGCTGATCGGAAACCGATCGA- 118
||| ||||||||||||||||||||| ||| ||| ||||||| || || ||||||||||
Sbjct 5 GCTGGAAGCGATGACCATGGCAGCATTTCTCGCGAGACGGCTTATTGGTAACCGATCGAG 64
Query 119 CTCAGATCCTTGGAGCCGT-GAACTCTAGCTCAGGTGCGGCT-AGTTCTGTCGCTAGGGC 176
| ||||| || || | | | || |||||||| ||||| | | | ||| || |||||||
Sbjct 65 C-CAGATTCTCGG-GACTTCGAGTTCTAGCTCCGGTGC-GTTCATTTCCGTTTCTAGGGC 121
Query 177 TTTCTGCTCCTCCACCACTCCGATCACCGCAACTCTC-TTCCCTGGCGATGGGATCGGTC 235
||||| |||||||||||||||||||| ||||||||| ||||| || |||||||||||||
Sbjct 122 TTTCTTCTCCTCCACCACTCCGATCAAAGCAACTCTCTTTCCC-GGTGATGGGATCGGTC 180
Query 236 CCGAGATCGCCGAATCTGTCAAAAAGGTGTTTACAACAGCTGGTGT-ACCAATTGAGTGG 294
|||| ||||| |||||||||||| |||||||||| | |||| ||| ||| ||||| |||
Sbjct 181 CCGAAATCGCTGAATCTGTCAAACAGGTGTTTACTGCCGCTGATGTGACC-ATTGATTGG 239
Query 295 GAAGAACACTATGTTGGGACTG-AGATAGATCCGAGAA-CACAGAGTTTCTTGACATGGG 352
|| ||||| | |||||| |||| || ||||||| |||| || | ||||||||||| ||||
Sbjct 240 GACGAACAGTTTGTTGGTACTGAAG-TAGATCCTAGAACCA-ATAGTTTCTTGACTTGGG 297
Query 353 AAAGTC-TCGAATCTGTGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCA 411
||| || || ||||||||| || |||||| |||||||||||||| |||||||| || |||
Sbjct 298 AAAATCTTC-AATCTGTGCTTAAAAACAAGGTTGGTTTGAAAGGACCAATGGCAACGCCA 356
Query 412 ATTGGGAAA-GGTCACCGTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGC 470
||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||| | |||||
Sbjct 357 ATT-GGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGGAAAGAGCTGAATTTGTATGC 415
Query 471 CAATGTTAGACCTTGTTACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCT 530
||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 416 CAATGTTAGGCCTTGCTACAGTCTTCCTGGTTACAAAACCCGTTATGATGATGTTGATCT 475
Query 531 CATTACCA-TCAGAGAAAACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGT-T 588
|||||||| || | |||||||| |||||||| |||||||| |||||||| ||||| ||
Sbjct 476 CATTACCATTC-GTGAAAACACCGAAGGAGAGTACAGTGGGCTTGAACACCAGGTCGTCA 534
Query 589 AGAGGTGTGGTGGAAAGTCTTAAAATCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAG 648
|| ||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||
Sbjct 535 AG-GGTGTGGTGGAAAGTCTTAAAATTATTACCCGTAAGGCGAGTATGAGAGTTGCTGAG 593
Query 649 TATGCTTTTCTCTATGCCAAGACTCATGGAA-GAGAGAGAGTTTCTGCTATCCACAAAGC 707
||||| ||||| |||||||||||||| |||| || ||| |||||| || || || |||||
Sbjct 594 TATGCCTTTCTTTATGCCAAGACTCACGGAAGGA-AGAAAGTTTCAGCAATTCATAAAGC 652
Query 708 CAACATTATGCAGAAAACTGACGGTCTCTTT-CT-CAAGTGTTGTCG-TGAGGTTGCTGA 764
||||||||||||||||||||| ||||| ||| || | |||||||| | |||||||||| |
Sbjct 653 CAACATTATGCAGAAAACTGATGGTCT-TTTCCTGC-AGTGTTGT-GATGAGGTTGCTAA 709
Query 765 GAAGTATCCTGAGATCA-CTTACGAGGAGGTCGTTATTGACAACTGCTGTATGATGCTTG 823
||||||||||||||| | ||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 710 GAAGTATCCTGAGAT-ATATTACGAGAAGGTTGTTATTGACAATTGCTGTATGATGCTTG 768
Query 824 TGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAACCTGTACGGTGACATTATTA 883
|||||||||||||||||||||||||||||||||||||||| || || || || ||||| |
Sbjct 769 TGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCA 828
Query 884 GCGATCTGTGTGCCGGA-TTGGTTGGAGGACTAGGATTGACTCCAAGT-TGTAATATTGG 941
||||| ||||||||||| ||| |||| ||||||||| ||||||| ||| || ||||||||
Sbjct 829 GCGATTTGTGTGCCGGACTTG-TTGGGGGACTAGGACTGACTCCTAGTATG-AATATTGG 886
Query 942 AGAAGATGGTGTAGCCCTTGCTGAAGCAGTTCACGGTTCTGCACCTGATATCGCTGGAAA 1001
|| |||||| | |||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 887 GGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTGCACCTGATATTGCTGGAAA 946
Query 1002 GAACTTGGCGAACCCAACCGCGTTGCTTCTGAGTGGAGTGATGATGTTGCGTCACCTGAA 1061
|||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 947 GAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGATGATGTTGCGGCACCTGAA 1006
Query 1062 GTTCAACGAACAAGCAGAACAAATCCACAGTGCAATCATCAACACCATAGCAGAGGGCAA 1121
| ||||| |||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 1007 GCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCAACACAATAGCCGAGGG-AA 1065
Query 1122 A-TACAGAACCGCGGATCTTGGAGGTAGTTCGACCACCACGGAATTCACAAAGGCAATCT 1180
| || ||||| || ||||| ||||||| || ||||| || || |||||||| || ||||
Sbjct 1066 AGTATAGAACTGCTGATCTCGGAGGTACCTCAACCACAACAGATTTCACAAAAGCCATCT 1125
Query 1181 GTGATCATCTCTGAACATC-GTAAAATCCA 1209
|||||||||||| |||| | |||||| |||
Sbjct 1126 GTGATCATCTCTAAACACCCGTAAAAACCA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5