BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03420.1
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487117 jgi|Araly1|487117|fgenesh2_kg.6__251__AT5G03420.1 2130 0.0
Ahg359028 jgi|Araly1|359028|fgenesh1_pg.C_scaffold_9000068 311 1e-83
> Ahg487117 jgi|Araly1|487117|fgenesh2_kg.6__251__AT5G03420.1
Length=2127
Score = 2130 bits (1153), Expect = 0.0
Identities = 1450/1588 (91%), Gaps = 41/1588 (3%)
Strand=Plus/Plus
Query 452 ATTTAAGTAAGGAGGCTGAAAAACAAGGAAGTTTGAGTAAAGATG-----A-A---TCGT 502
||| |||||| ||||||||| |||||||||||||||||||||||| | | || |
Sbjct 545 ATTCAAGTAACGAGGCTGAAGAACAAGGAAGTTTGAGTAAAGATGAATTTATATCCTCTT 604
Query 503 C-ACTG--GCTGGAGTTTTGAGCTTGGAAAACTCTTTTTCTAACTTGGGTGACAGTAATC 559
| ||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 605 CGTCTGACGATGGATTTTTGAGCTTGGAAAACTCCCTTTCTAACTTGGGTGACAGTAATC 664
Query 560 ATTCAGGAGAAATCACAGAAAA-AATTTTCAAGATTGAGAGTGTGGAGCTCAATGAGATA 618
|||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||| |
Sbjct 665 ATTCAGGAGAAATCACAGAAAACAATTTT-AAGGTTGAGAGCGTGGAGCTCAATGAGAGA 723
Query 619 GCTGACATTGAAAACTCATCGTCTGAAGCTTCAGTATTTGCAAACCATTCTCAAGATT-T 677
||||||||||||||||| || || ||||||||| ||| ||||||| ||||||||| || |
Sbjct 724 GCTGACATTGAAAACTCTTCTTCGGAAGCTTCAATATCTGCAAACTATTCTCAAG-TTGT 782
Query 678 ATATGATACTTCAAGCTGT-C--CTGACATAGAAGCAGGCAATGTTTCGATGACAGAGGA 734
| |||||||||||||| || | ||||| |||||| |||||||||| ||||||||||||
Sbjct 783 AGATGATACTTCAAGCCGTCCTACTGACGCAGAAGCTGGCAATGTTTTGATGACAGAGGA 842
Query 735 TGAGGAGGTCAACGATGTGGACAAAGATTTCTCTCTTACGTTTGATCATTACACCAGTCC 794
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGAGGAGGTCAATGATGTGGACAAAGATTTCTCTCTTACGTTTGATCATTACACCAGTCC 902
Query 795 TACCTCTAATCATTACACTAGTCCAGATCTCAATTCCATCAAACATGTTGACATTGCTAC 854
||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 903 TACCTATAATCATTACACTAGTCCAGATCTCAGTTACACCAAACATGTTGACATTGCTAC 962
Query 855 TGGATCCTCGTATGATCTGACCTCAGAGAATACCATGACAAATGTAGAGAATTTTCAGAA 914
|||||||||||||||| ||||||| || ||||||||| |||||| |||||||||||||||
Sbjct 963 TGGATCCTCGTATGATTTGACCTCGGAAAATACCATGGCAAATGCAGAGAATTTTCAGAA 1022
Query 915 TCAGCAGATTGATGATATTGCTGCAAATCGTTCTGGTAGTGCTGATGATAGTTTAGTTGA 974
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCAGCAGATTGATGATATGGCTGAAAATCGTTCTGGTAGTGCTGATGATAGTTTAGTTGA 1082
Query 975 GTCTGAGGATAATGATTGGATGTCAGGGCTTTCTTCTTGCACTTCAAGCATAGAAGAAAA 1034
|| ||||||||| |||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct 1083 GTTTGAGGATAAGGATTGGATGTCAGGACTTTCTTCTTCCATTTCAATCATAGAAGAAAA 1142
Query 1035 AACAACCAGATTTATTCAGAATGGATACTTGGATACAGTTGGTGCTGATGAAAATGACAT 1094
||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 1143 AACAACCAGATTTATACAGAATGGATACTTGGATATAGTTGATGATGATGAAAATGGCAT 1202
Query 1095 ACCCAATGAAAGCTGTCCTGAAG------A--AAG-T-TCAGAAACAACCAAAGGTGGTG 1144
||| ||||||||||||||||||| | ||| | | |||||||| |||||||||||
Sbjct 1203 ACCTAATGAAAGCTGTCCTGAAGACCCTAAGGAAGATGT-AGAAACAAACAAAGGTGGTG 1261
Query 1145 AGTACATAGGAGACAGTCT-TGGAGGTCCGAGAATTATGAGTACACCACTAAATGGAAGT 1203
||||||||||||||||| | ||| |||| ||||| | | |||| |||||||||||||||
Sbjct 1262 AGTACATAGGAGACAGT-TATGGTGGTCAGAGAAGTGTCAGTATGCCACTAAATGGAAGT 1320
Query 1204 GCCCTAGCATTGAAGGAGATAATCCATGCTACAGAAGTTAATAGCTCTGACAGGAATAGT 1263
||| |||||||| ||||| | | |||||||| |||| |||| ||||||||||||||||||
Sbjct 1321 GCCTTAGCATTGGAGGAGGTTACCCATGCTAAAGAACTTAACAGCTCTGACAGGAATAGT 1380
Query 1264 GATCAGAGAGATGGGAGTGTTGGCTTGGACACGGATCCACATCATGAGACCAGGAAACGG 1323
||||||||||||||||||| || | ||||| ||||| ||||| |||||||||||||||||
Sbjct 1381 GATCAGAGAGATGGGAGTGCTGACCTGGACTCGGATTCACATGATGAGACCAGGAAACGG 1440
Query 1324 GAAAATCAGGTTGAAATTGATCGGCTGAGGTTCATGCTGGATCAAAAAGAGCTGGAGTTG 1383
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1441 GAAAATCAGGTTGAAATTGATCGGCTGAGGTTCATGCTGCATCAAAAAGAGCTGGAGTTG 1500
Query 1384 TCAAGGCTGAAAGAGCAGATTGAAAAAGAAAAGCTGTCTCTTTCAGTTCTCCAAAGACAG 1443
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1501 TCAAGGCTGAAAGAGCAGATTGAAAAGGAAAAGCTCTCTCTTTCAGTTCTCCAAAGACAG 1560
Query 1444 GCTGAAACAGAGATCCAAAAGGCCCAAATGCTTATCTCAGAGAAGGAAGTTGAATTGCAA 1503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1561 GCTGAAACAGAGATCCAAAAGGCCCAAATGCTTATCTCAGAGAAGGAAGTTGAATTGCGA 1620
Query 1504 GAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGGTTGTGATTGAATATTGCGGAGATGGT 1563
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 GAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGGTTGTGATTGAATATTGTGGAGATGGT 1680
Query 1564 AACGCTGTGGAAGTGACTGGCAGTTTCAATGGGTGGCAACACCGAGTGGGAATGGAACTA 1623
|| | ||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 1681 AATGTTGTGGAAGTGACTGGTAGCTTCAATGGGTGGCAACACCGAGTGGGAATGGAGCTA 1740
Query 1624 CAAGCATCCAAGTCAATAGGGAAACAGAAATGCTGGTCGACATTACTGTGGTTATATCCC 1683
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CAAGCATCCAAGTCAATCGGGAAACAGAAATGCTGGTCGACATTACTGTGGTTATATCCC 1800
Query 1684 GGTACATATGAGATAAAGTTCATCGTGGACGGGCAATGGATAACGGATCCTCAAAAAGAT 1743
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GGTACATATGAGATTAAGTTCATCGTGGACGGGCAATGGATAACGGATCCTCAAAAAGAT 1860
Query 1744 TCGGTTACAAGAGGACATATCTCAAACAACATTCTCAAAGTAGACAGCCAATGATCTCTT 1803
|||||||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||
Sbjct 1861 TCGGTTACAAGAGGGCACATCACAAACAACATTCTCATAGTAGACAGCTGATGATCTCTT 1920
Query 1804 GCCTTTACTGATTTTTCGAGTCGAATTCACTCCAGATGATCGGTGCAGGCTTAAACAGGT 1863
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1921 GCTTTTACTGATTTTTCGAGTCGAATTCACTCCAGATAATCGGTGCAGGCTTAAACAGGG 1980
Query 1864 GAAAAG-AGCAGAGCAAAACATTTCAAAGGTTTATT--AGCCTCTTCAATT-T---AAGT 1916
|||||| ||||||| ||| |||||||||| |||||| ||||||||||||| | || |
Sbjct 1981 GAAAAGGAGCAGAGTAAATCATTTCAAAGTTTTATTTTAGCCTCTTCAATTATTTCAAAT 2040
Query 1917 CTACGATGTTTTGCTTTTATTCTTTGAAG-CTTAGGGATAGACTCTGTACAAAATTGTAA 1975
||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2041 CTAGGATGTTTTGCTTTCATTCTTT-AAGGCTTAGGGATAGACTCTGTACAAAATTGTAA 2099
Query 1976 TTTAAGGTAAAATAATACATTTATAAGG 2003
||||||||||||||||||||||||||||
Sbjct 2100 TTTAAGGTAAAATAATACATTTATAAGG 2127
Score = 518 bits (280), Expect = 8e-146
Identities = 401/455 (88%), Gaps = 26/455 (6%)
Strand=Plus/Plus
Query 1 ATGGCGACGATTTCTCAGATACCTTTCTCTATCTCCTTCCCTTGTTTCGAATTTCGGAAA 60
||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||
Sbjct 1 ATGGCGACGATTTCTCAGAGACCTTTCTCTCTCTCCTTCCCTTCTCTCGAATTTCGGAAA 60
Query 61 CCATCG-T-T-CTA-C-T----ATCATCAGCCTCAACTTTTTGTTTCGTACTTGAATT-C 110
|||| | | | ||| | | ||||||| |||||||||||||||||||||||||||| |
Sbjct 61 CCATTGTTATACTATCATCGCCATCATCAACCTCAACTTTTTGTTTCGTACTTGAATTAC 120
Query 111 -C-ACGAAGAAGCATAGTTTTATCTGTTTCGCATGTTCCACCAAACAAACCAGAGTTCGT 168
| | |||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct 121 ACGAAGAAGAAGCGTAGTTTTGTCTGTTTCGCTTGTTCCATCAAACAAACCAGAGTTCGT 180
Query 169 AAGAGAGTGAAGAGCAATGAGGAGCTTCGGAGTGAGATTATGCAGTTCGTTGCTTTGGCT 228
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 181 AAGAGAGTGAAGAGCGATGAGGAGCTTCGGAGTGAGATTATGGAGTTCGTTGCTTTAGCT 240
Query 229 GGGCTTCCTGAAGGTCACGTGCCGTCCATGAAGGAACTCTCCGCACATGGAAGAGTTGAT 288
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GGGCTTCCTCAAGGTCACGTGCCGTCCATGAAGGAACTCTCGGCACATGGAAGAGTTGAT 300
Query 289 CTTGCTAACATTGTAAGACGAAGAGGCTATAAATTCATCAAGGAACTTGTTGCAAACTCT 348
||||| |||||||| ||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 301 CTTGCCAACATTGTCAGACGAAGAGGATATAAATTTATCAAGGGACTTGTTGCAAACTC- 359
Query 349 GG-TATGGAGGAAGACTGTAACGAGCTAGTCGCTGACTCTGAGGATAATAATACCAACAT 407
|| |||||| || |||||||||||||||| | || ||| | | |||||||||||
Sbjct 360 GGATATGGATGA---CTGTAACGAGCTAGTC--T--CT--GAG-A-A-TAATACCAACAC 407
Query 408 TGAAACAGGAGGAAGCCGAGCTTGTTTGGAAGATT 442
||||||||| | ||| ||| ||||||||||||||
Sbjct 408 TGAAACAGGTGCAAGTGGAGTTTGTTTGGAAGATT 442
> Ahg359028 jgi|Araly1|359028|fgenesh1_pg.C_scaffold_9000068
Length=1005
Score = 311 bits (168), Expect = 1e-83
Identities = 211/231 (91%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 1310 AGACCAGGAAACGGGAAAATCAGGTTGAAATTGA-TCGGCTGAGGTTCATGCTG-GATCA 1367
|||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | |||
Sbjct 728 AGACCATGAAACGGGAAAATCAGGTTGAAATT-ACTCGGCTGAGGTTCATGCTGCG-TCA 785
Query 1368 AAAAGAGCTGGAGTTGTCAAGGCTGAAAGAGCAGATTGAAAAAGAAAAGCTGTCTCTTTC 1427
|||||||| |||| |||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 786 AAAAGAGCAGGAGCTGTCAAGGTTGAAGGAGCAGATTGAAAAGGAAAAGCTGTCTCTTTC 845
Query 1428 AGTTCTCCAAAGACAGGCTGAAACA-GAGATCCAAAAGGCCCAAATGCTTATCTCAGAGA 1486
||||| |||||||| ||||||| | ||||||| ||||||||| |||||| |||||| ||
Sbjct 846 GGTTCTTCAAAGACAAGCTGAAA-ATGAGATCCTAAAGGCCCAGATGCTTGTCTCAGTGA 904
Query 1487 AGGAAGTTGAATTGCAAGAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGG 1537
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 AGGAAGTTGAATTGCGAGAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGG 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75418685100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5