BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03470.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487124 jgi|Araly1|487124|fgenesh2_kg.6__258__AT5G03470.1 2841 0.0
Ahg478311 jgi|Araly1|478311|fgenesh2_kg.3__1012__AT3G09880.1 1260 0.0
> Ahg487124 jgi|Araly1|487124|fgenesh2_kg.6__258__AT5G03470.1
Length=1893
Score = 2841 bits (1538), Expect = 0.0
Identities = 1784/1897 (94%), Gaps = 39/1897 (2%)
Strand=Plus/Plus
Query 46 tctctctcGCTCGCCGGGAAAAATCGCTGTCCAAATCTCCGGTCATTTCTCCGAGGATCT 105
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TCTCGCTCGCTCGCCGGTTAAAATCGCTGTCCAAATCTCCGGTCATTTCTCCGAGGATCT 86
Query 106 CTTCTATCAATCCAACGGTTTTG-TTTTCATCTTCTCAGATCTCACAGAACAATAGTCAA 164
|||||||||||||||||| || | ||||||||| ||||||||||||||||| ||| || |
Sbjct 87 CTTCTATCAATCCAACGG-TTCGATTTTCATCTCCTCAGATCTCACAGAAC-ATACTCGA 144
Query 165 AGACTGATGCAGAAGAAGCGTTAGTACAAGGTTTTTGTTGGAAAGCAATTGAATCTGAAT 224
|||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
Sbjct 145 AGACTGATGCAGAAGAAGCGTTAGTAGAAGGTTTTTGTTGGAAAGC-----AAT-TG-A- 196
Query 225 TCATCTTTCATTTTCACGCTTTGATCCAATTTGAGTTCTCTCTTCCACTGAATCCCTCAT 284
| || | | | ||||||| |||||||||||||||||||||||| ||| |
Sbjct 197 --A----TC----TGA-G---GGATCCAA-TTGAGTTCTCTCTTCCACTGAATCTCTCGT 241
Query 285 ACGTAAAACCTAGGGTTTCTAAATTAGGGTTCTCCTGAGGTCTGTTTATAGTGCGTAAAG 344
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 242 TCGCAAAACCTAGGGTTTCTAAATTAGGGTTCT-CTGAGGTCTGTTTAAAGTGCGT-AAG 299
Query 345 CCATGTTTAAGAAGATCATGAAAGGGGCAAATCGAAAAGCCTCTAAAGCTGAGGCGAATG 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 CCATGTTTAAGAAGATCATGAAAGGGGCAAATCGAAAAGCCTCTAAAGCTGAGGCAAATG 359
Query 405 ATTCGTCTATGTATGGGTTTGATCCACCAGGTAGGTCAGGTCCTGGATCCAATATGATTG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCGTCTATGTATGGGTTTGATCCACCAGGTAGGTCAGGTCCTGGATCCAATATGATTG 419
Query 465 TAAATCACGCATCTCGTGGTTCGCTTGTTCCTTCTTCTCCAAATTCAATGGCGGCGGCCA 524
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 420 TAAATCACGCATCTCGTGGTTCGCTTGTTCCTTCTTCTCCAGGTTCAAT---GGCGGCCA 476
Query 525 CCACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCCTTGTTCAGAGACGTCTCTG 584
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 477 CCACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCGTTGTTCAGAGACGTGTCTG 536
Query 585 TCTCCGAGCGTCAATCCTTGTTCTTGAGGAAACTCCAGATTTGTTGTTTTCAATTTGATT 644
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTTCCGACCGTCAATCTTTGTTCTTGAGGAAACTCCAGATTTGTTGTTTTCAATTTGATT 596
Query 645 TTACGGATACGTTGAAGAATGCGAGAGAGAAGGAGATTAAGAGGCAAACGTTATTGGAGC 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTACGGATACGTTGAAGAATGCGAGAGAGAAGGAGATTAAGAGGCAAACGTTATTGGAGC 656
Query 705 TAGTTGATTTTATACAGTCTGGAGCAGGGAAGCTCACTGAAGTTTGTCAAGAAGAAATGG 764
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 657 TAGTTGATTTTATACAGTCTGGAGCAGGGAAGCTCTCTGAAGTTTGTCAAGAAGAAATGG 716
Query 765 TAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTCCGGCTTCACACGAGAATACAG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTCCGGCTTCACACGAGAATACAG 776
Query 825 GTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATTTGGAACCATCTTGGCCTCATT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATTTGGAACCATCTTGGCCTCATT 836
Query 885 TACAGCTAATTTATGAGTTGCTGCTGAGATACATTGTTCCTTCTGACACAGATACAAAAG 944
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 837 TACAGCTAGTTTATGAGTTGTTGCTGAGATACATTGTTCCTTCTGACACAGATACAAAGG 896
Query 945 TTGCAAAACGGTATATTGATCATTCTTTTGTGTTGAGGTTGCTTGAATTGTTTGAAACTG 1004
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 TTGCGAAACGGTATATTGACCATTCTTTTGTGTTGAGGTTGCTTGAATTGTTTGAGACTG 956
Query 1005 AAGATCCTAGAGAAAGGGAGTACTTGAAAACGATTCTTCATAGGATTTATGGCAAGTTTA 1064
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 AAGATCCAAGAGAAAGGGAGTACTTGAAAACGATTCTTCATAGGATTTATGGGAAGTTTA 1016
Query 1065 TGGTTCACAGGCCCTTTATTAGGAAAGCAATGAACCATATTTTCTATAGGTTTATTTATG 1124
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1017 TGGTCCACAGGCCCTTTATTAGGAAAGCAATGAACAATATATTCTATAGGTTTATTTATG 1076
Query 1125 AGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGATTCTCGGTAGTATTATTAATG 1184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1077 AGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGATTCTGGGTAGTATTATAAATG 1136
Query 1185 GGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTTTGATTAGGGCGTTGATACCGC 1244
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1137 GGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTTTGATCAGGGCTTTGATACCTC 1196
Query 1245 TGCATAAGCCAAAACCAATCGCTATGTATCACCAACAATTGTCTTACTGCATCGTTCAGT 1304
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1197 TGCATAAGCCAAAACCAATTGCTATGTATCATCAACAATTGTCTTACTGCATTGTTCAGT 1256
Query 1305 TTGTGGAGAAAGATTATAAGCTTGCGGATACGGTGATCAGGGGCTTGTTAAAGTTTTGGC 1364
||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 1257 TTGTGGAGAAAGATTATAAGCTTGCGGATACAGTAATTAGGGGGTTGTTAAAGTTTTGGC 1316
Query 1365 CTGTGACAAATTGTACAAAAGAGGTTCTCTTTCTTGGTGAACTTGAAGAGGTTCTTGAGG 1424
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1317 CTGTGACAAACTGTACAAAAGAGGTTCTCTTTCTCGGTGAACTTGAAGAAGTTCTTGAGG 1376
Query 1425 CAACACAAACTGTTGAGTTCCAACGCTGTATGGTCCCTCTGTTCCAACAGATTGCTCGAT 1484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1377 CAACACAAACTGTTGAGTTCCAACGCTGTATGGTCCCTCTGTTCCAACAGATTGCTCGGT 1436
Query 1485 GCCTCAGTAGCTCTAATTTTCAGGTTGCAGAACGAGCTCTGTTCTTGTGGAACAACGAGC 1544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1437 GCCTCAGCAGCTCTAATTTTCAGGTTGCAGAACGAGCTCTGTTCTTGTGGAACAATGAGC 1496
Query 1545 ATGTGGTGGGTCTAATAGCTCAGAACCGAGGAGTGATCCTTCCCATCATATTTGCATCCC 1604
| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1497 ACGTTGTAGGTCTAATAGCGCAGAACCGAGGTGTGATCCTTCCCATCATATTTGCATCCC 1556
Query 1605 TGGAGAAAAACATAGAGTCTCATTGGAACCAAGCGGTACACGGTCTAAGTGCGAATATAA 1664
|||||| ||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||
Sbjct 1557 TGGAGAGAAACATAGAGTCTCACTGGAACCAAGCTGTACACGGTTTAAGCGCGAATATAA 1616
Query 1665 AGAGAATGTTCATGGAGATGGACCCTGAGCTCTTTGAAGAATGTCAGCAACAGTACGAAG 1724
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1617 AAAGAATGTTCATGGAGATGGACCCTGAGCTCTTTGAAGATTGCCAGCAACAGTACGAAG 1676
Query 1725 AAAAACAAGCCAAATCTAAACAAGTGGAAGAGCAACGCCAAAATAGGTGGAGGAGATTAG 1784
| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1677 AGAAACAAGCCAAATCGAAACAAGTGGAAGAACAACGCCAAAGTAGGTGGAGGAGATTAG 1736
Query 1785 ATGAAGCAGTGGAGGAACGAGAAAGAGAAGATCCTATGATCACTTCTTAGaaaaaaaTAT 1844
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 ATGAAGCGGTGGAAGAACGAGAAAGAGAAGATCCTATGATCACTTCTTAGAAAAAAAAAT 1796
Query 1845 ATCAAATCATCA-AAGTAATAATATTCT--CTCT--CACTT--CTTCTCATTTTCTCTAA 1897
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||
Sbjct 1797 ATCAAATCATCATAAGTAATAATATTCTTTCTCTTTCACTTATCTTCTCATTTTCACTAA 1856
Query 1898 TCGTTGCAAa-ttattatattttatttatttattttG 1933
|||||||||| ||||||||||||||||||||||||||
Sbjct 1857 TCGTTGCAAAATTATTATATTTTATTTATTTATTTTG 1893
> Ahg478311 jgi|Araly1|478311|fgenesh2_kg.3__1012__AT3G09880.1
Length=2151
Score = 1260 bits (682), Expect = 0.0
Identities = 1232/1496 (82%), Gaps = 44/1496 (3%)
Strand=Plus/Plus
Query 333 TAG-TGCGTAAAGCCATGTTTAAGAAGATCATGAAA-G-GGGCAAATCGAAAAG-CCTCT 388
||| ||||| |||| ||||||||||| ||||||||| | |||| |||| |||| |||||
Sbjct 353 TAGTTGCGT-AAGCTATGTTTAAGAAAATCATGAAAGGTGGGC--ATCG-AAAGCCCTCT 408
Query 389 AAAGCTGAGGCGAATGATTCGTCTATG-TATGGGTTTGATCCACC--A-GGTAGGTCAGG 444
||| | || || ||||| | |||| | |||||| ||| || || | |||||||||
Sbjct 409 AAATCCGAAGCTAATGAACCTTCTA-GTTATGGGATTGGTCTGCCTGATAATAGGTCAGG 467
Query 445 TCCTGGATCCAATATGATTGTAAATCACGCATCTCGTGGTTCGC-TT-GTT-CCTTCTTC 501
|||||| |||||| || | || | |||||| |||||||| | || || ||| | || ||
Sbjct 468 TCCTGGCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGG-T-GCATTGGTTAAC-TCGTC 524
Query 502 TCCAAATTCAATGGCGGCGGCCACCACACAACCGCCTCCTATGTATTCAGTCGAGCCT-C 560
||| || |||| || | |||| | ||| || |||||| || || ||| | |
Sbjct 525 TCCGTCGCCAGTGGCTGC-AACTCCAC-C-ACCTCCGCCTATGGGCTCCGTGGAG-GTAC 580
Query 561 TTCCC-TTGTTCAGAGACG-TCTCTGTCTCCGAGCGTCAATCCTTGTTCTTGAGGAAACT 618
|||| ||||| ||||| | || | || || ||| | ||| | |||||||||||||||||
Sbjct 581 -TCCCGTTGTTTAGAGATGTTC-CGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAAACT 638
Query 619 CCAGATTTGTTGTTTTCAATTTGATTTTACGGATACG-TTGAAGAATGCGAGAGAGAAGG 677
|| | ||| ||||| | ||| ||||| || || ||| || ||||| |||||||||||||
Sbjct 639 TCAAAATTGCTGTTTCCTATTCGATTTCACTGACACGATT-AAGAACGCGAGAGAGAAGG 697
Query 678 AGATTAAGAGGCAAACGTTATTGGAGCTAGTTGATTTTATACAGTCTGGAGC-AGGGAAG 736
||||||||||||||||||| ||||||| || |||||||||||||||||| | | | |||
Sbjct 698 AGATTAAGAGGCAAACGTTGCTGGAGCTGGTGGATTTTATACAGTCTGGATCTA-GTAAG 756
Query 737 CTCACTGAAGT-TTGTCAAGAAGAAATGGTAAAGATGATTTCGGTTAATATATTCCGGTG 795
|| | ||| | ||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct 757 GTCTCGGAA-TCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATATTCCGGTC 815
Query 796 TCTTCCTCCGGCTTCACACGAGAATACAGGTCAAGAGCCTGCTGATCTTGAGGAAGAGGA 855
||| ||||| || |||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 816 TCTCCCTCCAGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAGGA 875
Query 856 GCCTTATTTGGAACCATCTTGGCCTCATTTACAGCTAATTTATGAGTTGCTGCTGAGATA 915
|| ||||| ||||| ||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 876 ACCCTATTTAGAACCTTCTTGGCCTCATTTACAGCTAGTTTACGAGTTGCTACTGAGATA 935
Query 916 CATTGTTCCTTCTGACACAGATACAAAAGTTGCAAAACGGTATATTGATCATTCTTTTGT 975
||||| | | ||||| |||||||| || || ||||||||||| || |||||||||||
Sbjct 936 TGTTGTTTCGACCGACACGGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGT 995
Query 976 GTTGAGGTTGCTTGAATTGTTTGAAACTGAAGATCCTAGAGAAAGGGAGTACTTGAAAAC 1035
||| | ||||||||| |||||||| |||| ||||| ||||| |||||||| ||||||||
Sbjct 996 GTTAAAGTTGCTTGATTTGTTTGATTCTGAGGATCCGAGAGAGAGGGAGTATTTGAAAAC 1055
Query 1036 GATTCTTCATAGGATTTATGGCAAGTTTATGGTTCACAGGCCCTTTATTAGGAAAGCAAT 1095
||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||
Sbjct 1056 GATTCTTCATAGGATTTATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAGGCAAT 1115
Query 1096 GAACCATATTTTCTATAGGTTTATTTATGAGACAGAGAGACATAGTGGGATTGGGGAGCT 1155
||| | || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1116 CAACAACATATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACT 1175
Query 1156 TTTGGAGATTCTCGGTAGTATTATTAATGGGTTTGCCTTGCCAATGAAGGAGGAGCACAA 1215
||||||||||| || ||||| || || |||||||| ||||| |||||||||||||||||
Sbjct 1176 CTTGGAGATTCTAGGCAGTATCATAAACGGGTTTGCGTTGCCTATGAAGGAGGAGCACAA 1235
Query 1216 GCTCTTTTTGATTAGGGCGTTGATACCGCTGCATAAGCCAAAACCAATCGCTATGTATCA 1275
||| || | || |||| ||||||||| ||||||||||||||||||||| | | |||||
Sbjct 1236 GCTATTCCTAATCAGGGTGTTGATACCATTGCATAAGCCAAAACCAATCGTTGTATATCA 1295
Query 1276 CCAACAATTGTCTTACTGCATCGTTCAGTTTGTGGAGAAAGATTATAAGCTTGCGGATAC 1335
|| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1296 TCAGCAGTTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATAC 1355
Query 1336 GGTGATCAGGGGCTTGTTAAAGTTTTGGCCTGTGACAAATTGTACAAAAGAGGTTCTCTT 1395
|| |||||||| |||||||||| |||||| |||||||| || |||| || ||||||
Sbjct 1356 AGTAATCAGGGGGTTGTTAAAGTATTGGCCCGTGACAAACTGCGCAAAGGAAAATCTCTT 1415
Query 1396 TCTTGGTGAACTTGAAGAGGTTCTTGAGGCAACACAAACTGTTGAGTTCCAACGCTGTAT 1455
||||| ||||||||||| ||||||||||||||||| |||| |||||||| || || ||
Sbjct 1416 CCTTGGAGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCAT 1475
Query 1456 GGTCCC-TCTGTTCCAACAGATTGCTCGATGCCTCAGTAGCTCTAATTTTCAGGTTGCAG 1514
||| || | | ||||||||||||| ||| ||||||| ||||||| | |||||||||||||
Sbjct 1476 GGTTCCAT-TATTCCAACAGATTGGTCGCTGCCTCACTAGCTCTCACTTTCAGGTTGCAG 1534
Query 1515 AACGAGCTCTGTTCTTGTGGAACAACGAGCATGTGGTGGGTCTAATAGCTCAGAACCGAG 1574
||||||| ||||||||||||||||||||||| | ||||||||||| || |||||||||
Sbjct 1535 AACGAGCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCACAGAACCGAA 1594
Query 1575 GAGTGATCCTTCCCATCATATTTGCATCCCT-GGAGAAA-AACATAGAGTCTCATTGGAA 1632
| ||||||||||| ||||||| | | | | ||| ||| |||||| ||||||| |||||
Sbjct 1595 GTGTGATCCTTCCAATCATATACCC-TGCATTGGA-AAAGAACATACAGTCTCACTGGAA 1652
Query 1633 CCAAGCGGTACACGGTCTAAGTGCGAATATAAAGAGAATGTTCATGGAGATGGACCCTGA 1692
|||||| || || ||||||| | ||||| |||| |||||||||||| ||||| |||||
Sbjct 1653 CCAAGCAGTCCATGGTCTAACCACAAATATCAAGAAAATGTTCATGGAAATGGATCCTGA 1712
Query 1693 GCTCTTTGAAGAATGTCAGCA-ACAGTACGAAGAAAAACAAGCCAAATCTAAACAAGTGG 1751
||||||||||||||| || | |||||| ||||| |||||| ||||| ||| |||| |
Sbjct 1713 GCTCTTTGAAGAATGCCAA-AGACAGTATGAAGAGAAACAATTGAAATCCAAAGAAGTAG 1771
Query 1752 AAGAGCAACGCCAAAATAGGTGGAGGAGATTAG-ATGAAGCAGTGGAGGAACGAGA 1806
|||| ||||| ||| ||| |||| |||||||| | ||||||| | |||||||||
Sbjct 1772 AAGAACAACGGCAATATACATGGAAGAGATTAGCA-GAAGCAGCAGCGGAACGAGA 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5