BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03555.1
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487134 jgi|Araly1|487134|fgenesh2_kg.6__268__AT5G03555.1 2920 0.0
> Ahg487134 jgi|Araly1|487134|fgenesh2_kg.6__268__AT5G03555.1
Length=1912
Score = 2920 bits (1581), Expect = 0.0
Identities = 1813/1924 (94%), Gaps = 19/1924 (1%)
Strand=Plus/Plus
Query 1 GACTCAATGGTCTCCAATTGCTTAAGCCTTAGTCTCCATCTCAATCTCCATCCCCACAAA 60
|||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 1 GACTCAATGGTCTCAAATTGCTTAAGCCTTACTCTCCATCCCAATCTTCATCCCCACAAA 60
Query 61 CACAATCGTCATTCTCTTTCTT-CTTTAAGATCTC-GCACAAAAGCTAAACTCTATCAAC 118
|||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||||||
Sbjct 61 CACAATCGTCATTCTCTTTCTTCCTTT-AGATCCCAG-ACAAAAGCTAAACTCTATCAAC 118
Query 119 ATGTCTCATTCACAGATTCAAGCCACAAGAGTTCCTACACTTCTTGTGTGTCTACGTTCG 178
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 119 ATGTCTCATTCACAGATTCAAGCCACAAGAGATCCTACACTTCTTGTGTGTCTACCTTTG 178
Query 179 ACAT-TCAACGCAAAAGTAGCAAACACTATGAATTGGGCAAGCACAGCTTCAGTCCGATC 237
|| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 179 AC-TCACAAAACAAAAGTAGCAAACACTATGAATTGGGCAAGCACAACTTCAGTCCGAGC 237
Query 238 CTGCCTGGTGACAACTTGGTTTTGAGCCGATCTGGTGTCATCCGCCCACGACTCTCAGCG 297
| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 238 CGGCCTGGTTACAACTTGGGTTTGAGCCGATCCGGTGTCATCCGCCCACGACTCTCGGCG 297
Query 298 ATGACCGGCTCAGAAAT-TAATGACCACGGGTACGACGAGTCCCAATTCGACCCATCCCT 356
||||||||||||| ||| |||||| |||||| ||||| ||||||||||||||||| ||
Sbjct 298 ATGACCGGCTCAG-AATCCAATGACTTCGGGTATGACGAATCCCAATTCGACCCATCTCT 356
Query 357 CACGAATGACGACTTGAAACCGACAACTCCAAGCCAGAGAACGTTTTCATGGTTGGATAT 416
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 CACGAATGAAGACTTGAAACCGACAACACCAAGCCAGAGAACGTTTTCATGGTTGGATAT 416
Query 417 GTCAAGTTTATGGATCGGTCTCGTAGTTGGTGTGCCTACTTACTACCTCGCCGGGAGCCT 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GTCAAGTTTATGGATCGGTCTCGTGGTTGGTGTGCCTACTTACTACCTCGCCGGGAGCCT 476
Query 477 AGTGGATCTTGGCATGGCGTGGTGGCAAGGGATCGCCACAGTTGTTACAGCCAATCTAAT 536
||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||
Sbjct 477 AGTGGATCTTGGCATGGCGTGGTGGCAAGGGATAGCCACAGTGGTTGCTGCCAACCTAAT 536
Query 537 ACTACTTGTGCCGCTGGTCCTCACCGCTCAGCCTGGCACTCTGTACGGAATTTCCTTCCC 596
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACTGCTCGTGCCGCTGGTCCTCACCGCTCAGCCTGGCACTCTGTACGGAATTTCCTTCCC 596
Query 597 TGTCCTTGCTAGATCATCATTTGGTATCCGTGGAGCTCACATCCCGACTCTACTCAGAGC 656
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTCCTTGCTAGATCATCCTTTGGTATCCGTGGAGCTCACATCCCGACTCTACTCAGAGC 656
Query 657 ATTAGTCGGTTGCGGATGGTATGGTATCGAGACATGGATCGGAGGTGAAGCTATCTTCTT 716
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 657 ATTAGTCGGTTGCGGATGGTACGGTATCGAGACATGGATCGGAGGAGAAGCCATCTTCTT 716
Query 717 GCTCTTACCGGGTCATATTAAGAAGTCTGCTTTGTCTCATACACTACCTTGGCTCGGCAC 776
||||||||||| ||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 717 GCTCTTACCGGCTCACATTAAGAACTCTGCTTTGTCTCATACGCTACCCTGGCTCGGCAC 776
Query 777 TTCTCCCCTTGAGTTCTCTTGTTTTATTGTCTTCTGGTTGGCTCAGCTTTGTATTGTCTG 836
|||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 777 TTCTCCGCTTGAGTTCTCTTGTTTCATCGTCTTCTGGTTGGCTCAGGTTTGTATTGTCTG 836
Query 837 GAGAGGTATGGATGGAATCAGAAAGCTGGAAAAGTACTCAGCTCCAATTCTGATCAGTCT 896
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 GAGAGGAATGGACGGAATCAGAAAGCTAGAAAAGTACTCAGCTCCAATTCTGATCAGTCT 896
Query 897 CACGTCCTGCCTCCTTGCCTGGTCCTATCTCAAAGCCGGTGGATTTGGTCACATGCTTTC 956
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 CACTTCCTGCCTCCTTGCCTGGTCCTATCTCAAAGCAGGTGGATTTGGTCACATGCTTTC 956
Query 957 CTTATCATCCAAGCTAACCTCTGCTCAGTTCTGGACTCTCTTCTTCCCGTCCCTAACCGC 1016
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 957 CTTGTCATCCAAGCTAACCTCTGCTCAGTTCTGGACTCTCTTCTTCCCCTCGCTAACCGC 1016
Query 1017 AAACATAAGCTTCTGGGCAACTCTAGCTTTAAACATCCCTGATTTTTCCCGGTTTGCAAA 1076
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1017 AAACATAAGCTTCTGGGCAACTCTAGCTTTAAACATCCCTGATTTTTCACGGTTTGCTAA 1076
Query 1077 ATCACAGACGGATCAAATCATCGGTCAAGTTGGTCTTCCTGTTTTCATGGGGTTGTTTAC 1136
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1077 ATCCCAGACGGATCAAATCATCGGTCAAGTTGGTCTTCCCGTTTTCATGGGTTTGTTTAC 1136
Query 1137 GTTTGTTGGCGTAGCTGTTACGTCCTCCACAAGTATCATCTTTGGAAGAGTCATATCCAA 1196
||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 GTTCGTCGGCGTAGCTGTTACGTCCTCCACAAGTATCATCTTTGGAAGAGTCATCTCCAA 1196
Query 1197 TCCGATTGAGCTTCTCGGTCAAATTGGAGGCCTCGCCACAACTCTACTCGCTATCGTCGG 1256
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1197 TCCGATTGAGCTTCTCGGTCAAATAGGAGGCCTCGCCACAACTCTACTCGCTATTGTTGG 1256
Query 1257 AATATCCCTAGCCACACTCACTACAAACATAGCTGCAAACGTGGTCGCCCCAGCAAATGC 1316
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 AATATCCCTAGCCACACTCACTACAAACATAGCTGCAAACGTGGTCGCGCCAGCAAATGC 1316
Query 1317 GCTTGTGAATCTAAACCCTAAGTTTTTCACATTCGGAAGAGGAGCCTTCTTGACCGCAGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCTTGTGAATCTAAACCCTAAGTTTTTCACATTCGGAAGAGGAGCCTTCTTGACCGCAGT 1376
Query 1377 TCTCGGAATCGTGTTTCAGCCATGGAGATTGCTTAAATCGAGCGAGAGCTTTGTGTACAC 1436
||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1377 TCTTGGTATCGTGTTTCAGCCATGGAGATTGCTCAAATCAAGCGAGAGCTTCGTGTACAC 1436
Query 1437 ATGGCTCATAGGGTACTCAGCGCTTCTTGGTCCAATCGGAGGCATAATTCTTGTCGATTA 1496
|||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1437 TTGGCTCATTGGTTACTCAGCGCTTCTTGGTCCAATCGGTGGCATAATTCTCGTCGATTA 1496
Query 1497 TTACCTGATCAAGAAGATGAAACTGAACATTGGAGATTTGTACTCTTTGAGTCCCTCCGG 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CTACCTGATCAAGAAGATGAAACTGAACATTGGAGATTTGTACTCTTTGAGTCCCTCCGG 1556
Query 1557 CGAATATTATTTCTCTAAGGGGTATAATGTCGCAGCGGTCGTCGCTTTGGTCGCCGGAAT 1616
||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1557 CGAATATTATTTCTCTAAGGGATACAATGTCGCAGCGGTTGTGGCTTTGGTCGCCGGAAT 1616
Query 1617 AATCCCAGTCGTGCCTGGTTTTCTACACAAGATCAGTGCTTTGTCGAAGATCTCAAATGG 1676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1617 AATCCCAGTCGTGCCTGGTTTTCTACACAAGATCAGAGCTTTGTCGAAGATCTCAAATGG 1676
Query 1677 GTTCGTCGTTGTTTACGACAATGCTTTGTTTTTCAGCTTCATCATCGCAGGATTTGTCTA 1736
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GTTCGTCGTTGTTTACGACAACGCTTTGTTTTTCAGCTTCATCATCGCAGGATTTGTCTA 1736
Query 1737 TTGGATCATAATGTCTCGTCTGGGAAGGAAACAGAGCTCGTTGTCTTCTTCTTCACATCC 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 TTGGATCATAATGTCTCGTCTGGGAAGGAAACAGAGCTCGTTGTCTTCTTCTTCACGGCC 1796
Query 1797 GCTTTTGTAAATCTT-TGCATTTAATTGGTTTCGTAAGTAACTAAATATAAGTCATCACA 1855
||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||
Sbjct 1797 GCTTTTGTAAATCTTGT-CATTTAATTGGTTTCGTAAGTA--TAAATATAAGTTATCA-- 1851
Query 1856 GATGTAAAATTAAACAGAAGAACAAAAGA--AAAGAATTGTCATTACTCATTACGGATTT 1913
||||||||||||||||||||||||||| | ||| || | ||| |||||||||||||
Sbjct 1852 GATGTAAAATTAAACAGAAGAACAAAAAAGGAAATAAA-G--ATTTGTCATTACGGATTT 1908
Query 1914 AATT 1917
||||
Sbjct 1909 AATT 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5