BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03560.2 Length=1250 Score E Sequences producing significant alignments: (Bits) Value Ahg892269 jgi|Araly1|892269|Al_scaffold_0006_265 1081 0.0 > Ahg892269 jgi|Araly1|892269|Al_scaffold_0006_265 Length=1437 Score = 1081 bits (585), Expect = 0.0 Identities = 692/742 (93%), Gaps = 14/742 (2%) Strand=Plus/Plus Query 382 GAGTTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 441 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 GAGGTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 349 Query 442 CTCTGTCTGATGATGATTCAGATGAGGAAACTGAAACTCAGGTTACTGAAGATTCAAAG- 500 |||||||||||||||||||||||||||||||| | | ||||||||||||||| | Sbjct 350 CTCTGTCTGATGATGATTCAGATGAGGAAACT----C-C-GGTTACTGAAGATTC-TGGC 402 Query 501 AAGCAGGAGCCTCC-ACCTCCTCCGTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 559 |||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 403 AAGCCGGAG-TTCCTGCCTCCTCCTTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 461 Query 560 ACCAGAGGATCCTAAGAATCTCCAAGAAATATTCCACAAGATGAGAACAGAGGGTTTTAC 619 ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| Sbjct 462 ACCAGAGGATCCTAAGAATCTTCAAGAAATATTCCATAAGATGAAAACAGAGGGTTTTA- 520 Query 620 T-AATGAAGCTGTGAAAATGTTTGATGCGTTGTCTAAAGATGGCCGCACACATGAGGCGT 678 | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 521 TGAATGAAGCTGTGAAAATGTTCGATGCGTTGTCTAAAGACGGCCGCACACATGAGGCGC 580 Query 679 TAGAGCTCTTCTCTCAGATTAAAGATAAGAATCGAATGCCAGACGTGGTGGCTCATACTG 738 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 581 TAGAGCTCTTCTCTCAGATTAAAGATAAAAATCAAATGCCAGACGTGGTGGCTCATACTG 640 Query 739 CTATTGTTGAGGCCTATGCTAATGCAGGCCAGGCCAAGGAGACTCTCAAGGTTTTCATGC 798 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 641 CTATCGTTGAGGCGTATGCTAATGCAGGCCAGGCCAAAGAGACTCTCAAGGTTTTCATGC 700 Query 799 GTATGCTCGCCAGTGGTGTTTCGCCTAATGCCTATACGTATTCAGTTTTGATCAAAGGGC 858 ||||||| ||| ||||||||||||||||||| ||||| ||| | |||||||||||||||| Sbjct 701 GTATGCTTGCCTGTGGTGTTTCGCCTAATGCGTATACATATACTGTTTTGATCAAAGGGC 760 Query 859 TTGCAGCGGATGGTAAAACACATAAGGATGCGAAGAAGTACTTGTTGGAAATGATGGGAA 918 ||||||||||||||| ||| | ||||||||||||||||||| |||| ||||||||||||| Sbjct 761 TTGCAGCGGATGGTAGAACGCTTAAGGATGCGAAGAAGTACGTGTTAGAAATGATGGGAA 820 Query 919 ATGGCATGAGCCCTAATGCTGCCACTTACACTGCAGTGTTTGAAGCTTTTGTAAGAGAGG 978 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 821 ATGGCATGAGCCCTAATGCTGCCACTTACACTTCAGTGTTTGAAGCTTTTGTAAAAGAGG 880 Query 979 GAAAAGAAGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGTTTTGTGCCTG 1038 |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 881 AAAAAGAGGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGGTTTATGCCTG 940 Query 1039 ATGAGAAAGCTGTGAGAGAGGCTCT-CGAATATAAAAGAGGCCAAGTCTTTAGGACTGTC 1097 ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 941 ATGAGAAAGCTGTGAGAGAGGCTCTTC-AATCTAAAAGAGGCCAAGTCTTTAGGACTGTC 999 Query 1098 ATCAACCTTTTATTTGATAAGT 1119 |||||||||||||||||||||| Sbjct 1000 ATCAACCTTTTATTTGATAAGT 1021 Score = 361 bits (195), Expect = 9e-99 Identities = 233/251 (93%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 89 ATCCC-TCGGAAATCGCTTCTCAGCCTCAGATATCACTTCATCTGCGATTAACGGCGGCG 147 ||||| | |||||||||| || ||| |||| ||||||||||||||||||||||||||| | Sbjct 42 ATCCCGT-GGAAATCGCTGCTTAGCGTCAGTTATCACTTCATCTGCGATTAACGGCGGTG 100 Query 148 AGTTTTCTGATTT-CGTTAGAGCTTTCGCCTTTTATTCGTCTTCGTCCTCTTGGTGGTCG 206 ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| Sbjct 101 AGTTTTCTGATTTCCG-TAGAGCTTTCGCCTTTTATTCGTCTTCGTCTTCTTGGTGGTCG 159 Query 207 TCTCCCGATGATTTGACGGCGTCATCGAAGAGGAAAGAGAAGAAGACTACAGAGCGTTTC 266 ||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| Sbjct 160 TCTCCCGATGATTTGACGGCGGGATCGAAGAGGAGAGAGAAGAATACTACAGACCGTTTC 219 Query 267 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGCTACGTGGGCGGCGC 326 ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| Sbjct 220 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGTTGCGTGGACGGCGC 279 Query 327 GATTTCGTAAG 337 ||||||||||| Sbjct 280 GATTTCGTAAG 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46700573325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5