BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03630.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487142 jgi|Araly1|487142|fgenesh2_kg.6__276__AT5G03630.1 2508 0.0
> Ahg487142 jgi|Araly1|487142|fgenesh2_kg.6__276__AT5G03630.1
Length=1543
Score = 2508 bits (1358), Expect = 0.0
Identities = 1487/1549 (96%), Gaps = 10/1549 (1%)
Strand=Plus/Plus
Query 1 TCTCGGATCCaaaaagacgaagaaaagg--aaaaaagacaaatcaaagagagaCGATTCG 58
||||||||||||||||| |||||||||| |||||| | ||||| || ||||||||||||
Sbjct 1 TCTCGGATCCAAAAAGAAGAAGAAAAGGTAAAAAAATAAAAATC-AA-AGAGACGATTCG 58
Query 59 ATCGCATCAATGGCAGAAGAAAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCGCC 118
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 59 ATCGCATCAATGGCGGAAGAGAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCTCC 118
Query 119 GCCGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATC 178
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 119 GCCGGATACGCGGCGAGAGAGTTCTTTAAGCAAGGTGTCAAGCCTGGTGAACTTGCTATC 178
Query 179 ATTTCCAGGGAACAAGTTCCTCCATATGAGCGTCCTGCACTTAGCAAGGGATATATCCAC 238
||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct 179 ATTTCCAGGGAACAAGTGCCTCCATATGAGCGTCCTGCTCTAAGCAAGGGATATATTCAC 238
Query 239 CTCGAAAATAAAGCTACACTTCCGAATTTCTATGTTGCTGCTGGAATTGGGGGAGAGAGA 298
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 239 CTAGAAAATAAAGCTACACTTCCGAATTTCTATGTCGCTGCTGGAAGTGGGGGAGAGAGA 298
Query 299 CAGTTCCCTCAATGGTACAAAGAGAAAGGTATTGAGCTGATTTTGGGCACAGAGATTGTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CAGTTCCCTCAATGGTACAAAGAGAAAGGTATTGAGCTGATTTTGGGCACAGAGATTGTC 358
Query 359 AAAGCAGATCTTGCTGCGAAGACACTTGTCAGTGGGACTGGACAAGTCTTCAAGTACCAA 418
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 359 AAAGCAGATCTTGCTGCAAAGACGCTTGTCAGTGGTACTGGACAAGTCTTCAAGTACCAA 418
Query 419 ACTTTGCTAGCTGCAACTGGTTCTTCTGTCATAAGGTTGTCAGATTTTGGCGTCCCAGGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTTTGCTAGCTGCAACTGGTTCTTCTGTCATAAGGTTGTCAGATTTTGGCGTCCCAGGT 478
Query 479 GCAGATGCTAAGAATATATTCTACCTGAGAGAACTCGAAGATGCTGATTACCTTGCTTAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCAGATGCTAAGAATATATTCTACCTGAGAGAACTCGAAGATGCTGATTACCTTGCTTAT 538
Query 539 GCAATGGAAACAAAGGAAAAAGGAAAGGCTGTGGTTGTTGGTGGCGGTTACATCGGTCTT 598
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 539 GCAATGGAAACAAAGGAGAAAGGAAAGGCCGTGGTTGTTGGTGGTGGTTACATCGGTCTT 598
Query 599 GAACTCGGTGCTGCTCTGAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCT 658
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 GAACTCAGTGCTGCTCTGAAGGCTAACAACCTCGAAGTTACCATGGTTTATCCAGAACCT 658
Query 659 TGGTGCATGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGCC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGGTGCATGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATGCC 718
Query 719 AACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAAT 778
||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 719 AACAAAGGAATCAACATTGTGAAAGGCACTGTTGCATCCGGTTTCAGTACCAACTCAAAT 778
Query 779 GGAGAGGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTGATA 838
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 779 GGAGAGGTGACTGAGGTGAAATTGAAGGACGGAAGAACATTAGAAGCTGATATCGTGATC 838
Query 839 GTGGGTGTCGGTGGTAGACCAATTATATCACTCTTCAAAGATCAAGTTGAAGAAGAGAAG 898
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 839 GTGGGTGTCGGTGGTAGACCGATTATATCACTCTTCAAAGGTCAAGTCGAAGAAGAGAAG 898
Query 899 GGTGGTTTGAAGACTGATGGGTTCTTCAAAACAAGCCTTCCAGATGTATACGCCATTGGT 958
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 GGTGCTTTGAAGACTGATGGGTTCTTCAAAACAAGCCTCCCAGATGTATACGCCATTGGT 958
Query 959 GATGTAGCCACCTTCCCAATGAAACTCTACAATGAAATGAGACGCGTTGAACACGTTGAC 1018
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 959 GATGTAGCCACCTTCCCAATGAAACTCTACAACGAAATGAGACGCGTTGAACACGTTGAC 1018
Query 1019 CATGCTCGCAAATCCGCTGAACAAGCCGTAAAGGCAATCAAGGCGGCTGAGGAAGGGAAC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 CATGCTCGCAAATCCGCTGAACAAGCCGTAAAGGCAATCAAGGCGGCTGAAGAAGGGAAC 1078
Query 1079 TCAATTCCGGAATATGACTATCTTCCATACTTTTACTCTCGAGCCTTTGATCTCTCATGG 1138
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1079 TCAATTCCGGAATATGACTATCTTCCATACTTCTACTCTCGAGCCTTTGATCTCTCATGG 1138
Query 1139 CAATTCTACGGTGACAACGTTGGAGAAAGCGTATTGTTTGGGGACAATGACCCGGAATCG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 CAATTCTACGGTGACAACGTTGGAGAAAGCGTATTGTTTGGGGACAATGACCCGAAATCG 1198
Query 1199 CCAAAGCCGAAATTCGGGAGCTACTGGATTAAAGAACGGAAAGTGGTTGGAGCATTTTTA 1258
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1199 TCTAAGCCGAAATTCGGGAGCTACTGGATTAAAGAAGGGAAAGTGGTTGGAGCATTTTTA 1258
Query 1259 GAAGGTGGAAGTCCTGAAGAGAACAATGCAATTGCTAAACTTGCACGAGCACAACCTTCT 1318
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GAAGGTGGAACTCCTGAAGAGAACAATGCAATTGCTAAACTTGCACGAGCACAACCTTCT 1318
Query 1319 GTTGAGAGCCTTGAAGTGCTATCTAAGGAAGGCCTTTCCTTCGCCACAAATATATAAATT 1378
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1319 GTTGAGAGCCTTGAAGTGCTGTCTAAGGAAGGCCTTTCCTTCGCCACAAAGATATAAATT 1378
Query 1379 GCCTTTCTAGGTTGTGTGTTAGTGTGAGCTTTGAGTTCAGAGTGGCTTTTATGTCACTTT 1438
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1379 GCCTTTCTAGGTTGTGTGTTAGTGTGAGCTTTGAGTTC-GAGTGGCTTTTATGTCATTTT 1437
Query 1439 GCTATTATGATAGCAGAGTCGACATTTTTGTTATTTGTTTGACCCACTTTCTTGTG-ATT 1497
||||||||||||||||||| ||||||||||||||||||||||| | ||||||| || |||
Sbjct 1438 GCTATTATGATAGCAGAGTGGACATTTTTGTTATTTGTTTGACTCGCTTTCTT-TGGATT 1496
Query 1498 GTTTGGTTCCAAAATAAAATTGAAAG-CTACTCAATTCACTTTTCTGAT 1545
|||||||||||||||||||||||||| | || ||||| |||||||||||
Sbjct 1497 GTTTGGTTCCAAAATAAAATTGAAAGTC-AC-CAATTAACTTTTCTGAT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5