BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03660.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487145 jgi|Araly1|487145|fgenesh2_kg.6__279__AT5G03660.1 1339 0.0
Ahg478325 jgi|Araly1|478325|fgenesh2_kg.3__1026__AT3G09980.1 479 2e-134
> Ahg487145 jgi|Araly1|487145|fgenesh2_kg.6__279__AT5G03660.1
Length=848
Score = 1339 bits (725), Expect = 0.0
Identities = 812/853 (95%), Gaps = 9/853 (1%)
Strand=Plus/Plus
Query 1 ATTATTAGGAACAAGAAATCCAACGGTCATCGTAGAGCGCATCAGATAAACGGCTAAAAA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATTAGGATTAAGAAATCCAACGGTCATCGTAGAGCGCATCAGATAAACGGCTAAAAA 60
Query 61 GCAAATTCTCTGGAAGAAGAAGAAGACGAAGATGCAACCGACAGAGACGTCGCAGCCGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAAATTCTCTGGAAGAAGAAGAAGACGAAGATGCAACCGACAGAGACGTCGCGGCCGGC 120
Query 121 GCCGTCGGATCAAGGCCGCCGGCTTAAGGATCAGTTATCGGAGAGTATGAGCTTCAGTAG 180
| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 GTCGGCGGATCAAGGCCGCCGGCTTAAGGATCAGTTGTCCGAGAGTATGAGCTTCAGTAG 180
Query 181 CCAAATGAAGAAGGAAGACGATGAGTTGTCGATGAAAGCTTTGTCGGCGTTCAAGGCCAa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAAATGAAGAAGGAAGACGATGAGTTGTCGATGAAAGCTTTGTCGGCGTTCAAGGCCAA 240
Query 241 agaagaggagatcgagaagaagaagatggagatcagagaaagagTTCAAGCTCAGCTTGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAAGAGGAGATCGAGAAGAAGAAGATGGAGATCAGAGAAAGAGTTCAAGCTCAACTTGG 300
Query 301 TCGTGTTGAAGATGAGTCCAAGCGTCTCGCTATGATTCGCGAGGAACTTGAAGGTTTTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGTGTTGAAGATGAGTCCAAGCGTCTCGCTATGATTCGCGAGGAACTTGAAGGTTTTGC 360
Query 361 TGATCCCATGAGGAAGGAAGTTACTATGGTGAGGAAGAAGATTGATTCTCTCGACAAAGA 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TGATCCCATGAGGAAGGAAGTTACTATGGTGCGGAAGAAGATTGATTCTCTCGACAAAGA 420
Query 421 ATTAAAGCCATTGGGGAATACAGTTCAGAAAAAGGAAACAGAGTACAAGGATGCTCTTGA 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 ATTAAAGCCATTGGGGAATACAGTTCAGAAGAAGGAAACAGAGTACAAGGATGCTCTTGA 480
Query 481 AGCATTCAATGAAAAGAACAAGGAGAAGGTGGAGCTGATCACCAAGCTACAGGAGTTGGA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AGCATTCAATGAAAAGAACAAGGAGAAGGTGGAGTTGATCACCAAGCTACAGGAGTTGGA 540
Query 541 GGGAGAAAGCGAGAAATTCAGGTTCAAGAAGCTGGAGGAGCTAAGCAAGAACATTGATCT 600
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAGAAAGCGAGAAACTGAGGTTCAAGAAGCTGGAGGAGCTAAGCAAGAACATTGATCT 600
Query 601 AACCAAACCTTAGTGTTGGACGAGCAGAGTCGCTGGGATTTGGCTATTCAAA-GTTCTAA 659
||||||||||||||||||||| |||| |||| |||||||| |||| || ||| ||| |||
Sbjct 601 AACCAAACCTTAGTGTTGGACTAGCACAGTCCCTGGGATTGGGCTTTTTAAAAGTTATAA 660
Query 660 AAAAGTCACTTT-TTAGAGTATTTTCATTGTTCTTTTATGATTCTAGTAATATATATAAT 718
|||| | || | ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 661 AAAA-T-ACCGTGTTAGAATATTTTCATTGTTCTTTTATGATTCTAGTAATATATA-A-T 716
Query 719 TTATAAAATAAAAAGTAAGAAGATATGTGTTT-GAACTAGATGTTGCAAAGAAAATGTAA 777
||||||||||||||||||||||| || |||| ||||||| ||||||| ||||| |||||
Sbjct 717 ATATAAAATAAAAAGTAAGAAGATTTG-GTTTTGAACTAGGTGTTGCATAGAAAGTGTAA 775
Query 778 CAAAGTTACGATGGCACTACATT-ATCGACGTGATTGGCAGAATTGTAATAGTAATGTAA 836
|||||||||||||||| |||||| |||| ||||||||| |||||||||||| ||||||||
Sbjct 776 CAAAGTTACGATGGCATTACATTTATCGTCGTGATTGGTAGAATTGTAATAATAATGTAA 835
Query 837 AGAAACTATGTTT 849
|||||||||||||
Sbjct 836 AGAAACTATGTTT 848
> Ahg478325 jgi|Araly1|478325|fgenesh2_kg.3__1026__AT3G09980.1
Length=947
Score = 479 bits (259), Expect = 2e-134
Identities = 394/458 (86%), Gaps = 13/458 (3%)
Strand=Plus/Plus
Query 151 TCAGTTATC-GGAGAGTATGAGCTTCAGTAGCCAAATGAAGAAGGAAGACGATGAGTTGT 209
||||||||| ||| |||||||| ||||| ||||||||| ||| |||||||| ||| |||
Sbjct 202 TCAGTTATCGGGA-AGTATGAGTTTCAGCAGCCAAATGTCGAAAGAAGACGAGGAGATGT 260
Query 210 CGATGAAAGCTTTGTCGGCGTTCAAG-GCCAaagaagaggagatcgagaagaagaagatg 268
| | || || || || ||||| || || ||||| || |||||||||||||||||||||
Sbjct 261 CTAGGACTGCGTTATCTGCGTT-TAGAGCGAAAGAGGAAGAGATCGAGAAGAAGAAGATG 319
Query 269 gagatcagagaaagagTTCAAGCTCAGCTTGGTCGTGTTGAAGATGAGTCCAAGCGTCTC 328
||||| || ||||| ||||||||||||||||||||||||||||| || | ||||||||
Sbjct 320 GAGATTAGGGAAAGGGTTCAAGCTCAGCTTGGTCGTGTTGAAGAAGAAACTAAGCGTCTT 379
Query 329 GCTAT-GATTCGCGAGGAACTTGAAGGTTTTGCTGATCCCATGAGGAAGGAAGTTACTAT 387
||| | ||| || ||||||||||||||||| ||||||||||||||||| |||||| || |
Sbjct 380 GCT-TCGATCCGTGAGGAACTTGAAGGTTTAGCTGATCCCATGAGGAAAGAAGTTGCTTT 438
Query 388 GGTGAGGAAGAAGATTGATTCTCTCGACAAAGAATTAAAGCCATTGGGGAATACAGTTCA 447
||| |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 439 GGTTAGGAAGAAGATTGATTCTGTCAACAAAGAATTAAAGCCATTGGGGCATACAGTTCA 498
Query 448 GAAAAAGGAAAC-AGAGTACAAGGATGCTCTTGAAGCATTCAATGAAAAGAACAAGGAGA 506
|||||||||| | ||||||||| || ||||||||||||||||| |||||||||| |||||
Sbjct 499 GAAAAAGGAA-CGAGAGTACAAAGAAGCTCTTGAAGCATTCAACGAAAAGAACAGGGAGA 557
Query 507 AGGTGGAGCTGATCACCAAGCTACA-GGAGTTGGAGGGAGAAAGCGAGAA-ATTCAGGTT 564
||||| |||| ||||||| |||| | |||||||| |||||||||||| || || || |
Sbjct 558 AGGTGCAGCTAATCACCAGGCTA-ATGGAGTTGGTGGGAGAAAGCGAAAAGATG-AGAAT 615
Query 565 CAAGAAGCTGGAGGAGCTAAGCAAGAACATTGAT-CTA 601
||||||||||| ||||||||||||||||| ||| |||
Sbjct 616 GAAGAAGCTGGAAGAGCTAAGCAAGAACATAGATTCTA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5