BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03760.1
Length=2299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487155 jgi|Araly1|487155|fgenesh2_kg.6__289__AT5G03760.1 3456 0.0
> Ahg487155 jgi|Araly1|487155|fgenesh2_kg.6__289__AT5G03760.1
Length=2266
Score = 3456 bits (1871), Expect = 0.0
Identities = 2160/2293 (94%), Gaps = 45/2293 (2%)
Strand=Plus/Plus
Query 5 cacacacacacacacacaacacTGTGtcttctctccctctgtttctgtttttagatctct 64
|||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 CACACACACACACACATACCACTGTGTCTCCTCTCTCTCTGTTTCTGTTTTTAGATCTCT 60
Query 65 cttctctcttctttctttccaaaaatcatcttctccttctccacctttcattatctttct 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTCTCTTCTTCCTTTCCAAAAATCATCTTCTCCTTCTCCACCTTTCATTATCTTTCT 120
Query 125 tctcttACCAAAACCCTTTAAATAC------aaaaaaaaac-ta-aaacacataaaaaaa 176
||||||||| ||||||||||||||| |||||||||| | ||| | | |||||||
Sbjct 121 TCTCTTACCTAAACCCTTTAAATACAAGAAAAAAAAAAAACACAGAAAAAAAGAAAAAAA 180
Query 177 -aTATTGAATTCTCCTTTTTCCCGACAATCTGAGTTTCTCAGGCAGAGAAGACAGAGATT 235
| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GAAATTGAATTCTCCTTTCTCCCGACAATCTGAGTTTTTCAGGCAGAGAAGACAGAGATT 240
Query 236 TTCACCGTAAGG-G--Caaaaaa-cgaaaaaCTCTGTCTCTCTGTTTCTGTTTCGTCCTT 291
|||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TTCACCGTAAGGAGAAAAAAAAAGGGAAAAACTCTGTCTCTCTGTTTCTGTTTCGTCCTT 300
Query 292 CCTTGGCTTTGATTTCTTACACCAAAAGAGACATCTTTAAAGAATCTCACATTGTTCCCT 351
| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 301 -C--GG-TTTGATTTCTTACACCACAAGAGACTTCTTTAAAGAATCTCACATTGTTCCCT 356
Query 352 ATTGCTTGTCTCACAAGAGAATCCTTGATCTAGGGTTCT-TGCTTCCCTCCCCTGttttt 410
||||| |||||||||||| ||||||| | || || ||| | || || ||
Sbjct 357 ATTGCGTGTCTCACAAGAAAATCCTT--TATACGGATCTAGGGTT--CT----TG----- 403
Query 411 ttCTTTAAATTCCTCCTCTGTTTTCTTTTTGTTCTCGTCGGAGTAAGAAGAGATGGAGCT 470
| | | ||||| ||||||| ||| | ||||| ||||||||||||| ||||||||
Sbjct 404 --C--T---TCCCTCCCCTGTTTT-TTTCT-CTCTCGCCGGAGTAAGAAGAAATGGAGCT 454
Query 471 AGGAGA-T--ACGACGTCGGTGATTCCAGACTCGTTCATGGGATACAGAGACGACATAAC 527
||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGGGGACTCGACGACATCGGTGATTCCAGACTCGTTCATGGGATACAGAGACGACATAAC 514
Query 528 AATGCAAATGTCAATGGTTTTGGATCAGATACGAGCTCCATTGATTGTTCCAGCCCTTAG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 515 AATGCAAATGTCAATGGTTTTGGATCAGATACGAGCTCCATTGATTGTTCCAGTCCTTAG 574
Query 588 GCTCGGTGTTTACATCTGTTTGACAATGTCGGTGATGCTCTTTGTTGAAAGGGTTTACAT 647
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 575 GCTCGGTGTTTACATATGTTTAACAATGTCGGTGATGCTCTTTGTCGAAAGGGTTTACAT 634
Query 648 GGGAATTGTTATCTCTCTTGTGAAGCTGTTTGGTCGAAAACCAGATAAACGTTTCAAATA 707
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GGGAATAGTAATCTCTCTTGTGAAGCTGTTTGGTCGAAAACCAGATAAACGTTTCAAATA 694
Query 708 TGAACCAATCAAAGATGACATCGAGCTTGGAAACTCTGCTTACCCGATGGTTCTTATTCA 767
||||||||| ||||| |||||||||||||||||||||| ||| || ||||||||| ||||
Sbjct 695 TGAACCAATGAAAGACGACATCGAGCTTGGAAACTCTGTTTATCCTATGGTTCTTGTTCA 754
Query 768 AATCCCAATGTTCAACGAACGAGAGGTTTATCAACTATCTATTGGAGCTGCTTGTGGACT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AATCCCAATGTTCAACGAACGAGAGGTTTATCAACTATCTATTGGAGCTGCTTGTGGACT 814
Query 828 CTCATGGCCTTCTGATCGAATCGTTATTCAAGTTCTTGATGATTCCACTGATCCAACGAT 887
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 815 CTCTTGGCCTTCTGATCGAATCGTCATTCAAGTTCTTGATGATTCCACTGATCCAACGAT 874
Query 888 CAAAGATCTAGTGGAGATGGAGTGTAGCAGGTGGGCGAGTAAAGGAGTAAACATCAAGTA 947
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 875 CAAAGATCTAGTGGAGATGGAGTGTAGCAGATGGGCGAGTAAAGGAGTAAACATCAAATA 934
Query 948 TGAGATCAGAGACAACAGAAATGGATACAAAGCAGGAGCTTTGAAAGAAGGAATGAAGAA 1007
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 935 TGAGATCAGAGATAACAGAAAAGGATACAAAGCTGGAGCTTTGAAAGAAGGAATGAAAAA 994
Query 1008 GAGTTATGTCAAAAGCTGCGATTACGTTGCAATCTTCGACGCTGATTTTCAACCTGAAGC 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 995 GAGTTATGTCAAAAGCTGCGATTACGTTGCAATCTTCGACGCTGATTTTCAACCTGAACC 1054
Query 1068 GGATTTTCTATGGAGAACCGTACCGTATCTACTCCATAACCCTAAGCTTGCTCTTGTTCA 1127
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1055 GGATTTTCTCTGGAGAACCGTACCGTATCTCCTCCATAACCCAAAGCTTGCTCTTGTTCA 1114
Query 1128 AGCTCGCTGGAAATTCGTAAATTCGGATGAATGTTTGATGACAAGGATGCAAGAAATGTC 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AGCTCGCTGGAAATTCGTAAATTCGGATGAATGTTTGATGACAAGGATGCAAGAAATGTC 1174
Query 1188 TTTGGATTATCATTTTACGGTGGAACAAGAAGTTGGTTCTTCTACTTACGCTTTCTTCGG 1247
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TTTGGACTATCATTTTACGGTCGAACAAGAAGTTGGTTCTTCTACTTACGCTTTCTTCGG 1234
Query 1248 ATTCAATGGAACTGCGGGAATATGGAGAATATCGGCATTAAACGAAGCTGGTGGTTGGAA 1307
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1235 ATTCAACGGAACTGCGGGAATATGGAGAATATCGGCACTAAACGAAGCTGGTGGTTGGAA 1294
Query 1308 AGATAGAACGACCGTGGAAGATATGGATTTGGCCGTGAGAGCTAGTCTCAAGGGTTGGAA 1367
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 AGATCGAACGACAGTGGAAGATATGGATTTGGCCGTGAGAGCTAGTCTCAAGGGTTGGAA 1354
Query 1368 ATTCTTGTACCTCGGTTCTTTGAAGGTTAAAAACGAGTTGCCAAGTACATTCAAGGCTTA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 ATTCTTGTACCTCGGTTCTTTGAAGGTTAAAAACGAGTTGCCAAGTACATTCAAGGCTTA 1414
Query 1428 TAGGTATCAACAGCACAGGTGGTCATGTGGTCCAGCTAATCTTTTCAGGAAAATGGCATT 1487
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1415 TAGGTATCAACAGCACAGGTGGTCATGTGGTCCAGCCAATCTTTTCAGAAAAATGGCATT 1474
Query 1488 CGAAATCATGACTAATAAGAACGTGACTTTGTGGAAGAAAGTTCATGTGATATATAGCTT 1547
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 CGAAATCATGACCAATAAGAACGTGACTTTGTGGAAGAAAGTTCATGTGATATATAGCTT 1534
Query 1548 CTTCGTGGTTAGAAAGCTAGTGGCACACATTGTTACCTTCATCTTCTACTGTGTGATCTT 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 CTTCGTGGTTAGAAAGCTAGTGGCACACATTGTTACCTTCATCTTCTACTGTGTGATCTT 1594
Query 1608 ACCCGCTACAGTTCTTGTACCGGAAGTTACTGTTCCGAAATGGGGAGCGGTTTACATTCC 1667
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1595 ACCCGCTACAGTTCTTGTACCGGAAGTTTCTGTTCCGAAATGGGGAGCGGTTTACATTCC 1654
Query 1668 TTCAGTCATTACTCTCCTCAACGCCGTTGGGACACCAAGGTCATTGCATCTTATGGTCTT 1727
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1655 TTCAGTCATTACTCTCCTCAACGCCGTTGGGACACCAAGGTCACTGCATCTTATGGTGTT 1714
Query 1728 TTGGATTCTGTTCGAGAATGTGATGTCTCTTCACAGAACAAAAGCTACCTTTATCGGTTT 1787
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1715 TTGGATTCTGTTCGAGAATGTTATGTCTCTTCACAGAACAAAAGCTACCTTCATCGGTTT 1774
Query 1788 ACTCGAAGGAGGAAGAGTTAATGAGTGGATTGTTACAGAGAAGCTGGGAGATGTTAAGGC 1847
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 ACTCGAAGGCGGAAGAGTTAATGAGTGGATTGTTACAGAGAAGCTGGGAGATGTTAAGGC 1834
Query 1848 TAAATCAGCCACCAAGACTTCAAAGAAGGTTATTCGTTTTAGATTTGGAGATAGAATTCA 1907
|||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1835 TAAATCGGCCACTAAGACTCCAAAGAAGGTTCTTCGTTTTAGATTTGGAGATAGAATTCA 1894
Query 1908 TGTGTTGGAACTCGGTGTAGGAATGTATCTGTTATTTGTGGGATGTTATGACGCGTTTTT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1895 TGTGTTGGAACTCGGTGTAGGAATGTATCTGTTATTTGTGGGATGTTATGACGCGTTTTT 1954
Query 1968 TGGGAAGAATCATTATTATCTATACCTTTTCGCACAAGCAATCGCGTTCTTCATTGCGGG 2027
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1955 TGGGAAGAATCATTATTATCTATACCTTTTCGCGCAAGCAATCGCGTTCTTCATTGCGGG 2014
Query 2028 ATTCGGGCAAATTGGGACAATTGTGCCTAACCATTGAAGGGAAAAAGGAGTTTTCGAGCG 2087
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2015 ATTCGGGCAAATTGGGACAATTGTGCCTAACCATTGAAGGGAAAAAGGAGTTTTTGAGCG 2074
Query 2088 ACGAATTGCTCGAGGATAAGAAGATGATTTGTTTTCTTTCTTTTTGGATTCGCTAGCTAT 2147
||||| |||||||| |||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 2075 ACGAAATGCTCGAGAATAAAAAGATGATTTCTTTTTTTTCTTTTTGGATTCGCTAGCTAT 2134
Query 2148 TTAAATTCTTGTTGGTGTGAATAGAGAGAATTGATGATACCATTGTTACAGAAAT-GGTG 2206
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 2135 TTAAATTCTTGTTGGTGTGAATAGAGAGAATTGATGATATGATTGTTACAGAAGTTGGTG 2194
Query 2207 TGTGTAGTGTGGAAGATAAAGGATACTTATAGTAAAGAAGAAATATACTTTGAAGGtttt 2266
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2195 TGTGTAGTGTGGAAGATAA-GGATACTTATAGTAAAGAAGAAATATACTTTGAAGGGATT 2253
Query 2267 tttCAGATTCCTT 2279
|||| ||||||||
Sbjct 2254 TTTCCGATTCCTT 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86579126885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5