BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03770.1 Length=1601 Score E Sequences producing significant alignments: (Bits) Value Ahg325028 jgi|Araly1|325028|fgenesh1_pm.C_scaffold_6000248 2102 0.0 > Ahg325028 jgi|Araly1|325028|fgenesh1_pm.C_scaffold_6000248 Length=1320 Score = 2102 bits (1138), Expect = 0.0 Identities = 1259/1319 (95%), Gaps = 2/1319 (0%) Strand=Plus/Plus Query 32 ATGAAGCTCGGAGTGTTTGTATACAGATTATACAGAGCT-TTAACCTACGGTGTCTCCCC 90 |||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||||| Sbjct 1 ATGAAGCTCGGAGTTTTTGTGTACAGATTATACAGAG-TGTTAACCTACGGTGTCTCCCC 59 Query 91 GTTGATTCACCTACACATACGGTGGCGCAGACTCCGGGGATTAGAGCATTTCAGCCGTTG 150 ||| ||| |||||||||||||||||||||||||||||||| |||||||| | | ||||| Sbjct 60 GTTAATTAACCTACACATACGGTGGCGCAGACTCCGGGGACCAGAGCATTGCCGTCGTTG 119 Query 151 GCCCGAGCGGTTCGGTCATCCCTCCGCCGTAAGACCACCGGGATCGCTTATCTGGTTTCA 210 ||| ||||||||||||||||| |||||||||||||| ||||| || || |||||||||| Sbjct 120 GCCAGAGCGGTTCGGTCATCCTTCCGCCGTAAGACCGCCGGGTTCACTCGTCTGGTTTCA 179 Query 211 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCTATTCCGGTGATCAGACACTGCAATGAAGT 270 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 180 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCGATTCCGGTGATCAGACACTGCAATGAAAC 239 Query 271 AAAGTCAGATTTGACTATCCTAATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 330 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GAAGCCAGATTTGACTATCCTTATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 299 Query 331 GAATCAGCTCCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCTTTAGCTAT 390 | |||| || ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 300 GGATCAACTTCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCGGTGGCTAT 359 Query 391 TGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTATCATAATGGAGAACGAACTCTG 450 |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 360 CGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTGTCATAATGGAGAATGAACTCTG 419 Query 451 GCCTAATCTTATCATGGCTGCTTCAGGACTTCTAATTCCGTTGGGATTGTTGAACGCTCG 510 ||||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct 420 GCCTAATCTCATCATGGCTGCTTCGGGACTTCTAATTCCGTTGGCAATGTTGAACGCTCG 479 Query 511 GATGTCTACTAAATCCTTTAAACGGTGGTCGAGTCCGCTCTTACTACCGCTGGTATCGTT 570 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 480 GATGTCTACTAAATCCTTTAAACGGTGGTCTAGTCCGCTCTTACTACCGCTGGTATCGTT 539 Query 571 GTTGCTATCTAAATTCTCATTGATAGCCCCACTGAGCACCCTGCAGGGTATACGTTTTCA 630 ||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||| || Sbjct 540 GTTGCTATCTAAATTCTCATTGATAGCACCTCTGAGCACCCTGCAGGGTTTACATTTCCA 599 Query 631 GTTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 690 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GCTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 659 Query 691 CAAGTTCCATGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCGC 750 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 660 CAAGTTCCGTGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCTC 719 Query 751 AGAAATGAAAGTCTGGATTGCATCTTCATTACATAGAGGCGAAGAAGAAGTCATTTTAGG 810 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 720 AGAAATGAAAGTCTGGATTGCATCTTCTTTACATAGAGGCGAAGAAGAAGTCATTTTAGG 779 Query 811 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 839 Query 871 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 899 Query 931 AAGGTCTCAAAACGAAAAGCTTACACCAAGGAAGACGAATATATATGTGGTGGATACACT 990 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 900 AAGGTCTCAAAATGAAAAGCTTACATCAAGGAAGACGAATATATATGTGGTGGATACACT 959 Query 991 AGGTGAACTAAGGGAATTGTACAGTGTCGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1050 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 960 AGGTGAACTAAGAGAATTGTACAGTGTAGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1019 Query 1051 CCCGGGCTTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGCGCCGTTATTAC 1110 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1020 CCCAGGATTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGTGCCGTTATTAC 1079 Query 1111 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGGCGAACCCCTT 1170 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1080 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGTCGAATCCCTT 1139 Query 1171 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTCGACTTGCTCCTGAG 1230 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1140 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTAGACTTGCTCCTGAG 1199 Query 1231 TAACCCTGAGATCTTGGAAACACATCAGAGAGCTTCTAAAGACGTTTATGAATCTCTATC 1290 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1200 TAACCCTGAGATCTTGGAAACACAGCAGAGAGCTTCTAAAGAAGTTTATGAATCTCTATC 1259 Query 1291 AAGCTGCATTATCACTAACATCTGGAAACTTCTCAATCTTCATATCTTTAGAGGGAAAT 1349 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1260 AAGCTGCATTATCACTAACATCTGGAATCTTCTCAATCTTCATATCTTTAGAGGGAAAT 1318 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59992135875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5