BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03880.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487166 jgi|Araly1|487166|fgenesh2_kg.6__300__AT5G03880.1 1762 0.0
> Ahg487166 jgi|Araly1|487166|fgenesh2_kg.6__300__AT5G03880.1
Length=1099
Score = 1762 bits (954), Expect = 0.0
Identities = 1059/1109 (95%), Gaps = 10/1109 (1%)
Strand=Plus/Plus
Query 1 AAAAACAAATTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAATTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60
Query 61 CAACCTCCGATTCTCCGATCGCTTTCTTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 120
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 CAACCTCCGATTCTCCGATCG--GT-TTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 117
Query 121 GTTATGGTCAAAGCTTCTTCCTCTGAACCTTCCGAGTCTGTTTCAGTCTCCACGAAGACC 180
|||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 118 GTTATGGTTAAAG---CTTCCTCAGAACCTTCCGAGTCTATTTCAGTGTCCACGAAGACC 174
Query 181 AGTGACGACACTGGAGCTGTTGTTGTGTTCACTGCTCCTCCTGGTTTCAAGCCACCGGAG 240
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 175 AGTGACGACACTGGAGC---TGTTGTGTTCACTGCTCCTCCCGGTTTCAAGCCACCAGAG 231
Query 241 CCAAAACGGTTCGCCGTCAAATCCGGAAAACTCTTCGATGTCTTGGGTGCAGCAATTGGA 300
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 232 CCGAAACGGTTCGCCGTCAAATCCGGAAAACTATTCGATGTCTTGGGTGCAGCAATTGGA 291
Query 301 TTGTTTTTCCGATTCGGCACTGGTGTTTTCGTTTCTGGGTACTCTGCATCTTTTGTGTCT 360
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 292 TTGATTTTCCGATTCGGCACTGGGGTTTTCGTTTCTGGGTACTCTGCATCTTTCGTGTCT 351
Query 361 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 411
Query 421 ACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 480
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACCGCTAAGCTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 471
Query 481 CCCTTCTGCCGGAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTCTACTAT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 472 CCCTTCTGCCGTAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTGTACTAT 531
Query 541 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 591
Query 601 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 651
Query 661 ATCAAATATCTATCCGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATCAAATATCTATCTGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 711
Query 721 GCTTTAACGGCTATAACAGCAGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 GCTTTAACGGCTATAACAGCTGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 771
Query 781 TACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGGGTTCTCCG 840
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 772 TACACACCTGCGAAACTACCACCTAAGCCACTAGAATTCTGGGCATACGAGGGTTCCCCA 831
Query 841 TTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTACCACACATTCAGCGCAGT 900
|| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 832 TTCTGCAAGCTTGTACGCGAAGTTCTTGTAGAGCTCGAGTTACCACACATTCAGCGCAGT 891
Query 901 TGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGGTG 960
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 892 TGTGCTCGCGGTAGCCCCAAACGGCAGGAATTGCTCGAGAAAGCTGGTCACTTTCAGGTG 951
Query 961 CCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCAGAAATTGTTGAG 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 952 CCTTACCTGGAAGATCCAAACACTGGAGTTGCGATGTTTGAGAGTGCAGAAATCGTAGAG 1011
Query 1021 TATCTCAAGCAAACTTATGCTGCCTAAGTGTTCGTCTTCCTCACTTTATACCGTATAGAT 1080
||||||||||||||||| ||||| ||||| ||| ||||||||||| ||||| ||||||||
Sbjct 1012 TATCTCAAGCAAACTTACGCTGCTTAAGTTTTCTTCTTCCTCACTCTATAC-GTATAGAT 1070
Query 1081 ATATGTTAATTGTTGTGTGTATGTTCAGC 1109
| |||||||||||||||||||||||||||
Sbjct 1071 ACATGTTAATTGTTGTGTGTATGTTCAGC 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5