BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03905.1 Length=858 Score E Sequences producing significant alignments: (Bits) Value Ahg939780 jgi|Araly1|939780|scaffold_600324.1 736 0.0 > Ahg939780 jgi|Araly1|939780|scaffold_600324.1 Length=518 Score = 736 bits (398), Expect = 0.0 Identities = 470/505 (93%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 142 aaaaaCTATGTCAAGATCTCTGGTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG 201 |||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 15 AAAATC-ATGTCGAGATCTCTGTTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG 73 Query 202 AGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTATCAAAGAAGCATCTTCTTC 261 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 74 AGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTCTCAAAGAAGCTTCTTCTTC 133 Query 262 TTCTTCGTCCCAACCTGAATCGTCTTCTAATGATGTAGTCCATCTCAGCGACAATTGTAT 321 |||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 134 TTCTTCTTCCCAATCTGAATCGTCTTCTATTGATGTCGTCCATCTCAGCGACAATTGTAT 193 Query 322 CCGGAGAATGAAAGAGTTACAATCTAGTGAGCCGGAAAAGAAAATGCTTCGCTTGGGCGT 381 |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 194 CCGGAGGATGAAAGAGTTACAATCTACTGAGCCGGAAAAGAAACTGCTTCGCTTGGGCGT 253 Query 382 AGAGACAGGAGGATGTTCTGGTTTCCAGTATAAGTTTGAGCTTGATAATAGAACCAACCC 441 |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| || Sbjct 254 AGAGACGGGAGGGTGTTCTGGTTTCCAGTATGTGTTTGAGCTTGATAATAGAACCAATCC 313 Query 442 TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTCGATAATGTTTCATACGA 501 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 314 TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTAGATAATGTTTCATACGA 373 Query 502 CTTGGTGAAAGGTGCTACAATTGATTATGAGGAGGAATTGATCCGTGCTGCTTTCGTGGT 561 ||| || ||||||||||| ||||||||| |||||| |||||||||||||||| ||||| Sbjct 374 CTTCGTTAAAGGTGCTACGGTTGATTATGTCGAGGAACTGATCCGTGCTGCTTTTGTGGT 433 Query 562 AGCTGTAAACCCGTCCGCAGTGGGTGGGTGCAGTTGTAAAAGCTCCTTCATGGTGAAACT 621 ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 434 AGCTGAAAACCCGGCCGCAGTAGGTGGATGCAGTTGTAAAAGCTCCTTCATGGTGAAACA 493 Query 622 CTGAATCATTGACTCAA-CTTTCTT 645 |||||||||||||||| ||| ||| Sbjct 494 GTGAATCATTGACTCAATCTT-CTT 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31756389861 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5