BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03905.1

Length=858
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939780 jgi|Araly1|939780|scaffold_600324.1                        736    0.0  


> Ahg939780 jgi|Araly1|939780|scaffold_600324.1
Length=518

 Score =  736 bits (398),  Expect = 0.0
 Identities = 470/505 (93%), Gaps = 3/505 (1%)
 Strand=Plus/Plus

Query  142  aaaaaCTATGTCAAGATCTCTGGTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG  201
            |||| | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  15   AAAATC-ATGTCGAGATCTCTGTTGAAACGCGTTGCTCCTTATTTGGCTGGTCGGATTAG  73

Query  202  AGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTATCAAAGAAGCATCTTCTTC  261
            |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct  74   AGAAAATCATCGATTGCTTAATTTTTCTTCTGCTTCTGCTCTCAAAGAAGCTTCTTCTTC  133

Query  262  TTCTTCGTCCCAACCTGAATCGTCTTCTAATGATGTAGTCCATCTCAGCGACAATTGTAT  321
            |||||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  134  TTCTTCTTCCCAATCTGAATCGTCTTCTATTGATGTCGTCCATCTCAGCGACAATTGTAT  193

Query  322  CCGGAGAATGAAAGAGTTACAATCTAGTGAGCCGGAAAAGAAAATGCTTCGCTTGGGCGT  381
            |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  194  CCGGAGGATGAAAGAGTTACAATCTACTGAGCCGGAAAAGAAACTGCTTCGCTTGGGCGT  253

Query  382  AGAGACAGGAGGATGTTCTGGTTTCCAGTATAAGTTTGAGCTTGATAATAGAACCAACCC  441
            |||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||| ||
Sbjct  254  AGAGACGGGAGGGTGTTCTGGTTTCCAGTATGTGTTTGAGCTTGATAATAGAACCAATCC  313

Query  442  TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTCGATAATGTTTCATACGA  501
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  314  TGATGACAGGGTTTTCGAGAAGAATGGTGTCAAATTGGTTGTAGATAATGTTTCATACGA  373

Query  502  CTTGGTGAAAGGTGCTACAATTGATTATGAGGAGGAATTGATCCGTGCTGCTTTCGTGGT  561
            ||| || |||||||||||  |||||||||  |||||| |||||||||||||||| |||||
Sbjct  374  CTTCGTTAAAGGTGCTACGGTTGATTATGTCGAGGAACTGATCCGTGCTGCTTTTGTGGT  433

Query  562  AGCTGTAAACCCGTCCGCAGTGGGTGGGTGCAGTTGTAAAAGCTCCTTCATGGTGAAACT  621
            ||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| 
Sbjct  434  AGCTGAAAACCCGGCCGCAGTAGGTGGATGCAGTTGTAAAAGCTCCTTCATGGTGAAACA  493

Query  622  CTGAATCATTGACTCAA-CTTTCTT  645
             |||||||||||||||| ||| |||
Sbjct  494  GTGAATCATTGACTCAATCTT-CTT  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31756389861


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5