BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03995.1

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487180 jgi|Araly1|487180|fgenesh2_kg.6__314__AT5G03995.1          353    5e-97


> Ahg487180 jgi|Araly1|487180|fgenesh2_kg.6__314__AT5G03995.1
Length=388

 Score =  353 bits (191),  Expect = 5e-97
 Identities = 336/397 (85%), Gaps = 45/397 (11%)
 Strand=Plus/Plus

Query  1    GTCACCACCAAACAGATAAAACACTGGCACTTTCTATATGGGGAAAGAGAGAATCAAAGA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    GTCACCACCAAACAGATAAAACACTGCCACTTTCTATATGGGGAAAGAGAGAATCAAAGA  60

Query  61   ACAATGATATTT-TGTTCTAA-CCATCAAAAAG-CAT---A------TTCTCAGTTTTCA  108
            |||||||| ||| |||||||| ||| | ||||| |||   |      |||||||||||||
Sbjct  61   ACAATGATTTTTGTGTTCTAACCCA-C-AAAAGACATAACATTGCTCTTCTCAGTTTTCA  118

Query  109  TCTCCGCTCTAATGGTGGAGGACATCTTCACACGATGCCTCTCTGAGAATGTTCTTCATG  168
            |||||||||||||| ||||||||||||||| |||||| | | || |||||||||||||||
Sbjct  119  TCTCCGCTCTAATGTTGGAGGACATCTTCAAACGATG-C-C-CTAAGAATGTTCTTCATG  175

Query  169  CTTCACAGACACAC---------A--G---------A-CA-TTCTTTGGAGAAATCTGCA  206
            ||||||||||||||         |  |         |  | |||||||||||||||||||
Sbjct  176  CTTCACAGACACACATTTTTAAAATGGTAATAAAAAAGAATTTCTTTGGAGAAATCTGCA  235

Query  207  GAAGCTTTCTTCGTTTTCTTTCCAAAGGTTCATGAAGATGACCAACAGTGGAACTCTCGA  266
             | || ||||| |  ||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct  236  CATGC-TTCTT-G--TTCTTTCCAAAGGTTCAAGAAGATGACGAACAATGGAACTCTCGA  291

Query  267  GCCAGAGGCATGAGAGAAACTCGTACATTTTCCCGATCATCACTCTCCAAGCGTTTTGTA  326
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  292  GCCAGAGGCATGAAAGAAACTCGTACATTTTCCCGATCATCACCCTCCAAGCGTTTTGTA  351

Query  327  TAT-ATTCAAGAATTGAGCTCT-ATCATTCACAAGTT  361
            ||| || |||||||||| |||| |||||| |||||||
Sbjct  352  TATTATACAAGAATTGAACTCTTATCATTAACAAGTT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16445058859


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5