BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03995.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value Ahg487180 jgi|Araly1|487180|fgenesh2_kg.6__314__AT5G03995.1 353 5e-97 > Ahg487180 jgi|Araly1|487180|fgenesh2_kg.6__314__AT5G03995.1 Length=388 Score = 353 bits (191), Expect = 5e-97 Identities = 336/397 (85%), Gaps = 45/397 (11%) Strand=Plus/Plus Query 1 GTCACCACCAAACAGATAAAACACTGGCACTTTCTATATGGGGAAAGAGAGAATCAAAGA 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 GTCACCACCAAACAGATAAAACACTGCCACTTTCTATATGGGGAAAGAGAGAATCAAAGA 60 Query 61 ACAATGATATTT-TGTTCTAA-CCATCAAAAAG-CAT---A------TTCTCAGTTTTCA 108 |||||||| ||| |||||||| ||| | ||||| ||| | ||||||||||||| Sbjct 61 ACAATGATTTTTGTGTTCTAACCCA-C-AAAAGACATAACATTGCTCTTCTCAGTTTTCA 118 Query 109 TCTCCGCTCTAATGGTGGAGGACATCTTCACACGATGCCTCTCTGAGAATGTTCTTCATG 168 |||||||||||||| ||||||||||||||| |||||| | | || ||||||||||||||| Sbjct 119 TCTCCGCTCTAATGTTGGAGGACATCTTCAAACGATG-C-C-CTAAGAATGTTCTTCATG 175 Query 169 CTTCACAGACACAC---------A--G---------A-CA-TTCTTTGGAGAAATCTGCA 206 |||||||||||||| | | | | ||||||||||||||||||| Sbjct 176 CTTCACAGACACACATTTTTAAAATGGTAATAAAAAAGAATTTCTTTGGAGAAATCTGCA 235 Query 207 GAAGCTTTCTTCGTTTTCTTTCCAAAGGTTCATGAAGATGACCAACAGTGGAACTCTCGA 266 | || ||||| | ||||||||||||||||| ||||||||| |||| |||||||||||| Sbjct 236 CATGC-TTCTT-G--TTCTTTCCAAAGGTTCAAGAAGATGACGAACAATGGAACTCTCGA 291 Query 267 GCCAGAGGCATGAGAGAAACTCGTACATTTTCCCGATCATCACTCTCCAAGCGTTTTGTA 326 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 292 GCCAGAGGCATGAAAGAAACTCGTACATTTTCCCGATCATCACCCTCCAAGCGTTTTGTA 351 Query 327 TAT-ATTCAAGAATTGAGCTCT-ATCATTCACAAGTT 361 ||| || |||||||||| |||| |||||| ||||||| Sbjct 352 TATTATACAAGAATTGAACTCTTATCATTAACAAGTT 388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16445058859 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5