BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04130.1
Length=2515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487191 jgi|Araly1|487191|fgenesh2_kg.6__325__AT5G04130.1 3832 0.0
Ahg478355 jgi|Araly1|478355|fgenesh2_kg.3__1056__AT3G10270.1 2102 0.0
> Ahg487191 jgi|Araly1|487191|fgenesh2_kg.6__325__AT5G04130.1
Length=2383
Score = 3832 bits (2075), Expect = 0.0
Identities = 2295/2399 (96%), Gaps = 24/2399 (1%)
Strand=Plus/Plus
Query 14 aaaaaCAAAATTTGAAGAAGAAGAAAAACCTC---TGAGCTTC-CAATTTCATGGCGCTT 69
||||||||||||||||| |||||||||||||| |||| ||| |||| ||||||||||
Sbjct 1 AAAAACAAAATTTGAAGCAGAAGAAAAACCTCTTATGAGTTTCTAAATTCCATGGCGCTT 60
Query 70 CTTCAGAGAGCTTCTTATCTGCGTCTCTATTATTTACGGCTCATGGGTTCTCGACCTCGt 129
||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 61 CTTCAGAGAGCTTCTTATCTGCG---------TTTACGGCTCATGGCTTCTCGACCTCGT 111
Query 130 ctcttctctagctctctctctcctgctcttcaccgtcacagctcga--cgctctcctcgc 187
||||||||||||||||| ||||||||||||| |||||||||||| | | ||||||||||
Sbjct 112 CTCTTCTCTAGCTCTCTGTCTCCTGCTCTTCGCCGTCACAGCTC-ATTC-CTCTCCTCGC 169
Query 188 ctccattttcctctccAAGTCCCAGTTTCAGGTTAAAGTTTCAGTTAACCAGTGTTTTGA 247
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 170 CTCCATTTTCCTCTCCAAGTCCCAGTTTCAGGTTAAAGTTTCAGTTTACCAATGTTCTGA 229
Query 248 GTCAAAGACTGATACAACGAAATGCTATTTCATCGAGGTTCTTGTCTACTGAGGCTTCCC 307
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 230 ATCAAAGACTGATACAACGAAATGCTGTTTCATCGAGGTTCTTGTCTACTGAGGCTTCCC 289
Query 308 AAGAGACTACCACATCTAAGGGTTACAGTTCTGAACAGATTCAAGTGCTGGAAGGCTTAG 367
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 290 AAGAGACTACCACATCCAAGGGTTACAGTTCTGAGCAGATTCAAGTGCTGGAAGGCTTAG 349
Query 368 ACCCTGTAAGAAAACGTCCAGGAATGTATATCGGAAGCACTGGATCTCGTGGTTTGCATC 427
||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 350 ACCCTGTCAGAAAACGGCCAGGAATGTATATAGGAAGCACTGGACCTCGTGGTTTGCACC 409
Query 428 ATTTGGTTTATGAGATACTTGACAACGCAATTGATGAGGCTCAAGCTGGTTATGCCTCAA 487
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 410 ATTTGGTTTATGAGATACTTGACAACGCAATTGATGAGGCTCAAGCTGGTTTTGCCTCAA 469
Query 488 AGGTTGATGTCGTCCTACATGCAGATGGCTCAGTTAGTGTTGTGGACAATGGGCGTGGGA 547
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 470 AGGTTGATGTCGTCCTGCATGCAGATGGCTCAGTCAGTGTTGTGGACAATGGGCGTGGGA 529
Query 548 TACCCACGGATTTGCATCCTGCGA-CAAAAAAGTCTTCCCTGGAGACTGTGCTTACGGTT 606
||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 530 TACCCACAGATTTGCATCCTGCTACCAAAAAA-TCTTCCCTGGAGACTGTGCTTACGGTT 588
Query 607 TTACATGCGGGTGGCAAGTTTGGTGGCACGAGTAGTGGCTACAGTGTGTCTGGTGGATTA 666
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 TTACATGCAGGTGGCAAGTTTGGTGGCACGAGTAGTGGTTACAGTGTGTCTGGTGGATTA 648
Query 667 CATGGTGTCGGTTTATCAGTAGTAAATGCTTTGTCTGAGGCTCTGGAGGTCTCGGTTTGG 726
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 CATGGTGTAGGTTTATCAGTAGTAAATGCTTTGTCTGAGGCTCTGGAGGTCACGGTTTGG 708
Query 727 AGAGATGGGATGGAGCATAAGCAAAATTATTCTCGTGGAAAGCCCATAACTACACTTACA 786
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 709 AGAGATGGGATGGAGCATAAGCAAAATTATTCACGTGGAAAGCCCATAACTACACTTACA 768
Query 787 TGTCGCGTCCTCCCCCTAGAGTCAAAGGGGACTAAAGGGACAAGCATCAGGTTTTGGCCT 846
||||| |||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 769 TGTCGTGTCCTCCCGCTAGAGTCAGAGAGGACTAAAGGGACAAGCATCAGGTTTTGGCCT 828
Query 847 GACAAAGAAGTTTTCACAACTGCAATCGAGTTCGACCATAACACCATTGCTGGACGAATT 906
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 829 GACAAAGAAGTATTCACAACTGCAATTGAGTTCGACCATAACACCATTGCTGGACGAATT 888
Query 907 AGGGAGCTTGCATTTTTGAATCCAAAGGTTACCATCTCTTTAAAAAAGGAGGATGATGAT 966
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 889 AGGGAGCTTGCATTTCTGAATCCAAAGGTTACCATCTCTTTAAAAAAAGAGGATGATGAT 948
Query 967 CCTGAAAAGACCCAATATAGTGAATACTCTTTTGCTGGAGGATTAACTGAATATGTTAGT 1026
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 949 CCTGAAAAGAACCAATATAGTGAATATTCTTTTGCTGGAGGATTAACTGAATATGTTAGT 1008
Query 1027 TGGCTAAATACTGATAAGAATCCAATTCATGACGTGCTGGGTTTCAGGAGAGAGATAAAT 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGCTAAATACTGATAAGAATCCAATTCATGACGTGCTGGGTTTCAGGAGAGAGATAAAT 1068
Query 1087 GGTGCCACCGTGGACGTTGCCCTTCAATGGTGCTCAGATGCATATTCAGACACAATGCTG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GGTGCCACCGTGGACGTTGCCCTTCAATGGTGCTCAGATGCATATTCAGACACAATGCTG 1128
Query 1147 GGATATGCCAATAGCATTCGCACTATTGATGGTGGAACACACATCGAAGGTGTGAAAGCT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GGATATGCCAATAGCATTCGCACTATTGATGGTGGAACACACATCGAAGGTGTGAAAGCT 1188
Query 1207 TCATTAACAAGGACTCTTAATACCCTTGCAAAAAAGTCAAAGACTGTTAAGGAGAAAGAT 1266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1189 TCATTAACAAGGACTCTTAATACCCTTGCAAAAAAGTCAAAGACTGTTAAGGAGAAGGAT 1248
Query 1267 ATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGTATCGTCTCAGTCAAGGTT 1326
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1249 ATTAGCTTAAGCGGGGAACATGTTAGAGAGGGATTGACCTGTATTGTCTCAGTCAAGGTT 1308
Query 1327 CCTAATCCTGAGTTTGAAGGTCAAACAAAGACAAGATTAGGAAATCCAGAGGTGAGAAAA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CCTAATCCTGAGTTTGAAGGTCAAACAAAGACAAGATTAGGAAATCCAGAGGTGAGAAAA 1368
Query 1387 ATTGTTGACCAATCAGTTCAGGAATATCTCACAGAGTTTTTGGAATTGCATCCAGATATT 1446
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1369 ATTGTTGACCAATCAGTTCAGGAGTATCTCACAGAGTTTTTGGAATTGCATCCAGATGTT 1428
Query 1447 CTTGAGAGCATTATTTCCAAATCCCTTAACGCTTACAAGGCTGCTTTGGCTGCCAAGAGG 1506
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1429 CTTGAGAGCATTATTTCCAAATCCCTGAACGCTTACAAGGCTGCTTTGGCTGCCAAGAGG 1488
Query 1507 GCAAGGGAGTTGGTCAGGTCGAAAAGCGTTTTGAAGTCATCATCACTTCCTGGGAAACTG 1566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1489 GCAAGGGAGTTGGTCAGGTCGAAAAGTGTTTTGAAGTCATCATCACTTCCTGGGAAACTG 1548
Query 1567 GCTGATTGCTCATCAACAGATCCTGAAGTATCTGAAATTTTTATAGTTGAAGGAGATTCT 1626
|||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 1549 GCTGATTGCTCATCAACAGATCCTGAAGAATCTGAGATTTTTATAGTCGAAGGAGATTCT 1608
Query 1627 GCTGGTGGCAGTGCGAAACAGGGCCGTGATAGACGATTTCAGGCAATTCTTCCTTTGAGA 1686
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1609 GCTGGTGGCAGTGCGAAACAGGGCCGTGACAGACGTTTTCAGGCGATTCTTCCTTTGAGA 1668
Query 1687 GGTAAAATTCTGAACATTGAAAGAAAGGATGAAGCAGCCATGTATAAGAATGAAGAAATT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GGTAAAATTCTGAACATTGAAAGAAAGGATGAAGCAGCCATGTATAAGAATGAAGAAATT 1728
Query 1747 CAAAATCTAATTCTTGGCCTTGGCCTCGGTGTGAAGGGAGAAGATTTTAAGAAAGAAAAT 1806
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1729 CAAAATCTAATTCTTGGCCTTGGCCTCGGTGTGAAGGGAGAAGACTTTAAGAAAGAAAAT 1788
Query 1807 TTGCGGTACCATAAGATAATCATCTTAACAGATGCAGATGTTGATGGTGCACATATCCGG 1866
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TTGCGGTACCATAAGATAATTATCTTAACAGATGCAGATGTTGATGGTGCACATATCCGG 1848
Query 1867 ACACTTCTGTTGACCTTTTTCTTCAGATATCAGAGAGCCTTGTTTGATGCAGGTTGCATA 1926
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1849 ACACTTCTGTTGACCTTTTTCTTCAGATATCAGAGAGCCTTGTTTGATGCGGGTTGCATA 1908
Query 1927 TATGTCGGTGTTCCTCCTCTGTTCAAGGTTGAAAGGGG-AAAGAATGCACAATATTGCTA 1985
|||||||||||||||||||| ||||||||||||||||| ||| | |||||| ||||||||
Sbjct 1909 TATGTCGGTGTTCCTCCTCTATTCAAGGTTGAAAGGGGGAAACA-TGCACATTATTGCTA 1967
Query 1986 TGATGATGCAGACCTTAAAAAGATCACCAGTAACTTCCCTGCAAACGCATCCTACAACAT 2045
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1968 TGATGATGCAGACCTTCAAAAGATCACCAGTAATTTCCCTGCAAACGCATCCTACAACAT 2027
Query 2046 TCAAAGGTTCAAAGGTTTGGGAGAGATGATGCCTGAACAGCTTTGGGAAACGACAATGAA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2028 TCAAAGGTTCAAAGGTTTGGGAGAGATGATGCCTGAACAGCTTTGGGAAACAACAATGAA 2087
Query 2106 TCCAGAAACAAGGATACTAAAGCAACTTGTTGTCGATGATATAGCGGAAGCAAACATGAC 2165
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2088 TCCAGAAACAAGGATATTAAAGCAACTTGTGGTCGATGATATAGCGGAAGCAAACATGAC 2147
Query 2166 ATTCTCATCTCTTATGGGTGCTCGGGTCGATGTCCGGAAAGAACTCATCAAAAATGCTGC 2225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2148 ATTCTCATCTCTTATGGGTGCTCGGGTCGATGTCCGGAAAGAACTCATCAAAAATGCAGC 2207
Query 2226 AACTAGGATCAACCTGCAGCGTCTAGACATATAACAGGAAACCACTTGAGATTGGTCTCT 2285
|||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||
Sbjct 2208 AACTAGGATCAATCTGCAGCGTCTCGACATATAACAGGAAACCGCTTGAGATTGGTGTCT 2267
Query 2286 ACATATTTCTTCATCTGGTCAGAGACATTAGATTATATATTTGTCAAAGGCCAACAATCT 2345
||| |||||||||||||| || |||||||||||||||||||||||||||| |||| | |
Sbjct 2268 ACAG-TTTCTTCATCTGGTAAGGGACATTAGATTATATATTTGTCAAAGGCGAACA-TGT 2325
Query 2346 TTTGTTTGTTTCTCTGGCCTAGCAAAAGTGACCACCGTTACAATTGTGACTGTAAAAAA 2404
||||| |||||||||||||| |||||| ||||| |||||| ||||||||||| ||||
Sbjct 2326 CTTGTTC-TTTCTCTGGCCTAGAAAAAGTTACCACTGTTACAGTTGTGACTGTACAAAA 2383
> Ahg478355 jgi|Araly1|478355|fgenesh2_kg.3__1056__AT3G10270.1
Length=2177
Score = 2102 bits (1138), Expect = 0.0
Identities = 1711/1985 (86%), Gaps = 49/1985 (2%)
Strand=Plus/Plus
Query 306 CCAAGAGA-CTACCACATCTAAGGGTTACAGTTCTGAACAGATTCAAGTGCTGGAAGGCT 364
|||||||| || | || ||||||| ||| ||||| || || || |||||| |||||||||
Sbjct 12 CCAAGAGAGCT-CTACCTCTAAGGATTATAGTTCCGAGCACATCCAAGTGTTGGAAGGCT 70
Query 365 TAGACCCTGT-AAGAAAACGTCCAGGAATGTATATCGGAAGCACTGGATCTCGTGGTTTG 423
|||| ||||| | ||||| | || ||||||||||| || ||||| |||||||||||||||
Sbjct 71 TAGATCCTGTCAGGAAAA-GACCTGGAATGTATATTGGTAGCACCGGATCTCGTGGTTTG 129
Query 424 CATCATTTGGTTTATGAGATACTTGACAACGCAATTGATGAGGCTCAAGCTGGTTATGCC 483
|| ||| ||||||||||||| ||||||||||||||||| ||||| |||||||||| |||
Sbjct 130 CACCATCTGGTTTATGAGATCCTTGACAACGCAATTGACGAGGCCCAAGCTGGTTTTGCT 189
Query 484 TCAAAGGTTGATGTCGTCCTACATGCAGATGGCTCAGTTAGTGTTGT-GGACAATGGGCG 542
|||||| |||| || || ||||| |||||| ||||| || || | |||||||| ||
Sbjct 190 TCAAAGATTGACGTTGTTTTACATTCAGATGATTCAGTCAGCATT-TCAGACAATGGACG 248
Query 543 TGGGATACCCACGGATTTGCATCCTGCGAC-AAAAAAGTCTTCCCTGGAGACTGTGCTTA 601
|||||||||||| |||||||||||||| || |||| || | |||| ||||| ||||
Sbjct 249 TGGGATACCCACAGATTTGCATCCTGCAACGGGAAAA-TCGGCTTTGGAAACTGTCCTTA 307
Query 602 CGGTTTTACATGC-GGGTGGCAAGTTTGGTGGCACGAGTAGTGGCTACAGTGTGTCTGGT 660
|||| |||||||| ||| || ||||||||||||| ||||||||| ||||| |||||||||
Sbjct 308 CGGTCTTACATGCAGGG-GGTAAGTTTGGTGGCAAGAGTAGTGGGTACAGCGTGTCTGGT 366
Query 661 GGATTACATGGTGTCGGTTTATCAGTAGTAAATGCTTTGTCTGA-GGCTCTGGAGG-TCT 718
||||| ||||| || ||||||||||| || ||||| ||||| || || | |||||| | |
Sbjct 367 GGATTGCATGGCGTAGGTTTATCAGTTGTGAATGCATTGTCAGAGGGAT-TGGAGGTTAT 425
Query 719 CGGTTTGGAGAGATGGGATGGAGCATAAGCAAAATTATTCTCGTGGAAAGCCCATAACTA 778
||| | ||||||||||||||| | |||| || ||||||||||||||||| |||| |
Sbjct 426 -TGTTCGCAGAGATGGGATGGAGTTTCAGCAGAAGTATTCTCGTGGAAAGCCTGTAACAA 484
Query 779 CACTTACATGTCGCGTCCTCCC-CCTAGAGTCAAAGGGGACTAAAGGGACAAGCATCAGG 837
|||||||||||| |||||||| || |||||||| ||||||| |||||||| ||||| ||
Sbjct 485 CACTTACATGTCATGTCCTCCCACC-AGAGTCAAGGGGGACTCAAGGGACATGCATCCGG 543
Query 838 TTTTGGCCTGACAAAGAA------G--TT-TTCACAACTGCAA-TCGAGTTCGACCATAA 887
|||||||||||||||||| | || ||||||||||||| || | |||||||||||
Sbjct 544 TTTTGGCCTGACAAAGAAGGTTTTGCCTTATTCACAACTGCAATTC-AATTCGACCATAA 602
Query 888 CACCATTGCTGGACGAATTAGGGAGCTTGCATTTT-TGAATCCAAAGGTTACCATCTCTT 946
||| |||||||||||||||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 603 CACTATTGCTGGACGAATTAGGGAGCTTGC-TTTTCTAAATCCAAAGGTTACAATCTCTC 661
Query 947 TAAAAAAGGAGGATGATGATCCTGAAAAGACCCAATATAGTGAATACTCTTT-TGCTGGA 1005
|||||||||||||||||||||| |||| | | ||||||||||| | ||| |||||||
Sbjct 662 TAAAAAAGGAGGATGATGATCCAGAAAGGGGCTTGTATAGTGAATA-TTTTTATGCTGGA 720
Query 1006 GGATTAACTGAATATGTTAGTTGGCTAAATACTGATAAGAATCCAATTCATGACGTGCTG 1065
|| ||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||
Sbjct 721 GGGTTAACTGAATATGTTAGCTGGCTAAATACTGATAAGAAACCGCTTCATGATGTGCTG 780
Query 1066 GGTTTCAGGAGAGAGATAAATGG-TGCCACCGTGGACGTTGCCCTTCAATGGTGCTCAGA 1124
|||||||| | |||||||||||| | ||||||| |||||| | ||||| |||||||||||
Sbjct 781 GGTTTCAGAAAAGAGATAAATGGCT-CCACCGTTGACGTTTCACTTCAGTGGTGCTCAGA 839
Query 1125 TGCATATTCAGACACAATGCTGGGATATGCCAATAGCATTCGCACTATTGATGGTGGAAC 1184
||| ||||||||||| ||||||||||| || ||||| ||||| || ||||||||||| ||
Sbjct 840 TGCCTATTCAGACACGATGCTGGGATACGCGAATAGTATTCGGACCATTGATGGTGGGAC 899
Query 1185 ACACATCGAAGGTGTGAAAGCTTCATTAACAAGGACTCTTAATACCCTTGCAAAAAAGTC 1244
||| || ||||||||||| |||||||||||||| ||||| ||| ||||||| |||||||
Sbjct 900 ACATATAGAAGGTGTGAAGGCTTCATTAACAAGAACTCTAAATTCCCTTGCGAAAAAGTT 959
Query 1245 AAAGACTGTTAAGGAGAAA-GATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGA 1303
|||| | | ||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 AAAGGTTATCAAGGA-AAAGGATATTAGCTTAAGTGGGGAACATGTTAGGGAGGGATTGA 1018
Query 1304 CCTGTATCGTCTCAGTCAAGGTTCCTAATCCTGAGTTTGAAGGTCAAACAAAGACAAGAT 1363
|||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 CCTGCATTGTCTCAGTCAAGGTTCCTAACCCTGAGTTTGAAGGTCAAACAAAGACAAGAC 1078
Query 1364 TAGGAAATCCAGAGGTGAGAAAAATTGTTGACCAATCAGTTCAGGAATATCTCACAGAGT 1423
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 1079 TAGGAAATCCAGAGGTGAGAAAAATTGTTGATCAATCAGTCCAGGAATACCTCACGGAGT 1138
Query 1424 TTTTGGAATTGCATCCAGATATTCTTGAGAGCATTATTTCCAAATCCCTT-AACGCTTAC 1482
|||||||||||||| ||| | ||||| |||||||||||||||| |||| || || |||
Sbjct 1139 ACTTGGAATTGCATCCGGATGTACTTGAAAGCATTATTTCCAAAT-CCTTGAATGCATAC 1197
Query 1483 AAGGCTGCTTTGGCTGCCAAGAGGGCAAGGGAGTTGGTCAGGTCGAAAAGCGTTTTGAAG 1542
||||||||| |||||||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1198 AAGGCTGCTCTGGCTGCCAAGAGGGCTAGGGAGTTGGTGAGATCAAAAAGCGTTTTGAAG 1257
Query 1543 TCATCATCACTTCCTGGGAAACTGGCTGATTGCTCATCAACAGATCCTGAAGTATCTGAA 1602
||||| ||||||||||||||||| || ||||||||||| |||||||||| || ||||||
Sbjct 1258 TCATCCTCACTTCCTGGGAAACTTGCAGATTGCTCATCTACAGATCCTGCAGAATCTGAG 1317
Query 1603 ATTTTTATAGTTGAAGGAGATTCTGCTGGTGGCAGTGCGAAACAGGGCCGTGATAGACGA 1662
||||| || || ||||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 1318 ATTTTCATTGTCGAAGGAGATTCTGCTGGTGGCAGCGCGAAACAGGGTCGTGACAGGCG- 1376
Query 1663 TTT-CAGGCAATTCTTCCTTTGAGAGGTAAAATTCTGAACATTGAAAGAAAGGATGAAGC 1721
||| ||||| ||||||||||||||||| |||||| |||| ||||| ||||||||||||||
Sbjct 1377 TTTCCAGGCGATTCTTCCTTTGAGAGGCAAAATTTTGAATATTGAGAGAAAGGATGAAGC 1436
Query 1722 AGCCATGTATAAGAATGAAGAAATTCAAAATCTAATTCTTGGCCTTGGCCTCGGTGTGAA 1781
||||||||||||||| |||||||||||||||||||||||||||||||| || || || ||
Sbjct 1437 AGCCATGTATAAGAACGAAGAAATTCAAAATCTAATTCTTGGCCTTGGTCTTGGAGTTAA 1496
Query 1782 GGGAGAAGATTTTAAGAAAGAAAATTTGCGGTACCATAAGATAATCATCTTAACAGATGC 1841
||||||||||||||| || || ||| |||| |||||||| || |||||||||||||||||
Sbjct 1497 GGGAGAAGATTTTAACAAGGAGAATCTGCGTTACCATAAAATTATCATCTTAACAGATGC 1556
Query 1842 AGATGTTGATGGTGCACATATCCGGACACTTCTGTTGACCTTTTTCTTCAGATATCAGAG 1901
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 AGATGTTGATGGTGCACATATCCGGACACTTCTGTTAACCTTTTTCTTCAGATATCAGAG 1616
Query 1902 AGCCTTGTTTGATGCAGGTTGCATATATGTCGGTGTTCCTCCTCTGTTCAAGGTTGAAAG 1961
|||||||||||| || ||||||||||| || |||||||| ||||| ||||||||||| ||
Sbjct 1617 AGCCTTGTTTGACGCGGGTTGCATATACGTTGGTGTTCCACCTCTTTTCAAGGTTGAGAG 1676
Query 1962 GGG-AAAGAATGCACAATATTGCTATGATGATGCAGAC-CTTAAAAAGATCACCAG-TAA 2018
||| ||| | || || |||||||| |||||||||| | |||||||| || ||| | |
Sbjct 1677 GGGGAAACAG-GCGCACTATTGCTACGATGATGCAG-CTCTTAAAAAAATTACC-GCTT- 1732
Query 2019 C-TTCCCTGCAAACGCATCCTACAACATTCAAAGGTTCAAAGGTTTGGGAGAGATGATGC 2077
| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1733 CGTTCCCTGCAAACGCATCTTACAACATTCAGAGGTTCAAAGGTTTGGGTGAGATGATGC 1792
Query 2078 CTGAACAGCTTTGGGAAACGACAATGAATCCAGAAACAAGGATACTAAAGCAACTTGTTG 2137
||| ||||| |||||||| |||||||| ||||| ||||||||| | |||||||| ||||
Sbjct 1793 CTGCGCAGCTATGGGAAACAACAATGAACCCAGATACAAGGATATTGAAGCAACTAGTTG 1852
Query 2138 TCGATGATATAGCGGAAGCAAACATGA-CATTCTCATCTCTTATGGGTGCTCGGGTCGAT 2196
| || || ||| ||| | || ||| | ||||||||||| |||||||||||||| |||
Sbjct 1853 TTGAGGACGCAGCAGAAACGAATATGGTC-TTCTCATCTCTGATGGGTGCTCGGGTGGAT 1911
Query 2197 GTCCGGAAAGAACTCATCAAAAATGCTGCAACTAGGATCAACCTGCAGCGTCTAGACATA 2256
||| |||| ||||||||||||| |||||| |||||||| || ||| || ||| ||||||
Sbjct 1912 GTCAGGAAGGAACTCATCAAAAGTGCTGCGACTAGGATGAATCTGGAGAATCTCGACATA 1971
Query 2257 TAACA 2261
|||||
Sbjct 1972 TAACA 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94806619805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5