BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04220.2
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325069 jgi|Araly1|325069|fgenesh1_pm.C_scaffold_6000289 1903 0.0
> Ahg325069 jgi|Araly1|325069|fgenesh1_pm.C_scaffold_6000289
Length=1701
Score = 1903 bits (1030), Expect = 0.0
Identities = 1192/1265 (94%), Gaps = 31/1265 (2%)
Strand=Plus/Plus
Query 644 GTTAAGTTCTATGAGACCAATGAGAAGGAGCTTCTGTTTGAACCATCAATCAAATGGGCA 703
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 439 GTTAAGTTCTATGAGACCAATGAGAAGGAACTTCTGTTTGAACCATCAATAAAATGGGCA 498
Query 704 GGCAATCCCAACATTGTTTTGGTGCTAAAGGTTCTGTCTTTACGAATTAGAGTTCAGCTA 763
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 499 GGCAATCCCAACATTGTTTTGGTGCTTAAGGTTCTCTCTTTACGAATTAGAGTTCAGCTC 558
Query 764 GTAGATCTCCAGTTTTTTGCAATAGTGCGTGTAGCTTTGAAGCCTCTTCTGCCGACATTC 823
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 559 GTAGATCTCCAGTTTTTTGCGATAGTGCGTGTAGCTCTGAAGCCTCTTCTGCCGACCTTC 618
Query 824 CCTTGTTTCGGAATGGTTGTAGTTTCGTTAATGGAAAAGCCACATGTTGATTTTGGATTG 883
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 619 CCTTGTTTCGGAATGGTTGTAGTTTCATTAATGGAAAAGCCACATGTTGATTTTGGATTG 678
Query 884 AAAGTGCTTGGTGGAGATCTCATGTCCATACCGGGGCTCTACAGATATGTTCAGGAAACT 943
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 679 AAAGTGCTTGGTGGAGATGTCATGTCCATACCGGGTCTCTACAGATATGTTCAGGAAACT 738
Query 944 ATTAAAAGGCAAGTTTCAAGCATGTACCATTGGCCACAAGTGCTTGAGATACCTATTCTT 1003
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 739 ATTAAAAGGCAAGTTTCAAGTATGTACCATTGGCCACAAGTGCTTGAGATACCTATTCTT 798
Query 1004 GATTCTTCAACAGCGTCTGTAAAGAAGCCTGTTGGATTACTACATGTGAGCATTCTTCGA 1063
||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 799 GATGCTTCAACAGCTTCTGTAAAGAAGCCTGTTGGATTACTACATGTGAACATTATTCGA 858
Query 1064 GCTCGTAATCTCCTCAAGAAGGATTTGTTGGGAACATCCGACCCTTATGTCAAGCTTAGC 1123
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 859 GCTAGTAATCTCCTCAAGAAGGATTTGCTGGGAACATCTGACCCTTATGTCAAGCTTAGC 918
Query 1124 TTAACTGGAGAAAAGCTTCCAGCAAAGAAAACCACCATAAAGAAGAGGAACTTAAACCCG 1183
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 TTAACCGGAGAGAAGCTTCCAGCAAAGAAAACCACCATAAAGAAGAGGAACTTAAACCCG 978
Query 1184 GAATGGAACGAACACTTTAAGCTCATCGTCAAGGACCCAAACTCACAAGTCCTTCAACTA 1243
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 979 GAATGGAACGAACACTTTAAGCTCATCGTGAAGGACCCAAAATCACAAGTCCTTCAACTA 1038
Query 1244 GAAGTCTTTGACTGGGACAAGGTCGGTGGGCACGACAGATTAGGAATGCAGATGATCCCT 1303
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1039 GAAGTTTTTGACTGGGACAAGGTCGGTGGGCACGACAGATTGGGAATGCAGATGATCCCC 1098
Query 1304 TTGCAAAAGATTAACCCGGGTGAGAGGAAGGAGTTTAATCTTGATCTGATTAAGAACTCA 1363
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 1099 CTGCAAAAGATTAACCCGGGTGAGAAGAAGGCGTTTAATCTTGATCTGATCAAGAACTCA 1158
Query 1364 AATGTTGTTATGGATTCTGGAGACAAGaaaaaaaGAGGAAGATTAGAGGTTG-ATCTCAG 1422
|||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 1159 AATGTTGTTATGGATTCTGGAGACAAGAAAAAGAGAGGAAGATTAGAG-TTGGATCTCAG 1217
Query 1423 GTATGTGCCATTCagagaagaaagcattaagcgtagaaa-a---g--ag-a-g----c-a 1469
|||||||||||||||||||||||| ||||| ||||||| | | || | | | |
Sbjct 1218 ATATGTGCCATTCAGAGAAGAAAGCCTTAAGAGTAGAAATAAAAGTCAGGATGAGTACCA 1277
Query 1470 gagaa--ga--g-a-a-a-------tcatcagagGACGATGATTTTCTCAGCCAAGCCGG 1515
||||| || | | | | |||||||||||||| ||||||||||||||||| ||
Sbjct 1278 GAGAAAAGAAAGCAGAGACGAGAAATCATCAGAGGACGACGATTTTCTCAGCCAAGCTGG 1337
Query 1516 TCTACTCTCGGTTGCAGTCCAATCTGCAAAAGATGTCGAGGGCAAGAAGAAACACTCGAA 1575
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1338 TCTACTCTCGGTTGCAGTCCAATCTGCCAAAGATGTCGAGGGCAAGAAGAAACACTCGAA 1397
Query 1576 CCCTTATGCTGTTGTTCTCTTCAGAGGAGAAAAGAAGAAAACTAAGATGCTGAAGAAAAC 1635
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1398 CCCTTATGCTGTTGTTCTCTTCAGAGGAGAAAAGAAGAAAACAAAGATGCTGAAGAAAAC 1457
Query 1636 ACGAGACCCTCGATGGAACGAGGAATTCCAGTTTACACTAGAGGAGCCTCCAGTGAAAGA 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ACGAGACCCTCGATGGAACGAGGAATTCCAGTTTACACTAGAGGAGCCTCCAGTGAAAGA 1517
Query 1696 GAGTATACGCGTTGAGGTCATGAGTAAAGGAACCGGCTTTCACTTTCGATCCAAGGAGGA 1755
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1518 GAGTATACGCGTTGAGGTCATGAGTAAAGGAACCGGCTTTCACTTTCGATCAAAGGAGGA 1577
Query 1756 ACTAGGACATGTAGACATAAATCT-GGACGATGTAGTTGACAATGGAAGGATCAACCAGA 1814
|||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||
Sbjct 1578 ACTAGGACATGTAGACATAAATCTTGG-CGATGTTGTTAACAATGGAAGGATCAACCAGA 1636
Query 1815 AATACCATCTTATCAATTCCAGAAACGGCATTATTCACATTGAGATCCGTTGGACAACTA 1874
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1637 AATACCATCTTATCAATTCCAGAAACGGCATAATTCACATTGAGATCCGTTGGACAACTA 1696
Query 1875 GTTAA 1879
|||||
Sbjct 1697 GTTAA 1701
Score = 619 bits (335), Expect = 2e-176
Identities = 370/387 (96%), Gaps = 2/387 (1%)
Strand=Plus/Plus
Query 257 ATGGGTTTCTTCACCAGTGTGTTGGGGATCATCGGTTTTGTAATCGGAATCCCTATCGGA 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTTCTTCACCAGTGTGTTGGGGATCATCGGTTTTGTAATCGGAATCCCTATCGGA 60
Query 317 CTCATCCTTGGTTTCTTCGTCTTGATTTATTCTCAGCCTTCACACCAAGAGTATCCACCT 376
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 61 CTCATCCTTGGTTTCTTCGTCTTGATTTATTCTCAGCCTACCCACCAAGAGTATCCACCT 120
Query 377 GCGAGGCCACTAGTTGAGACTAGTATCAGTGTTCTTCTTGATCTTTTACCAGACATTCCA 436
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 GCGAGGCCACTAGTTGAAACTAGCATCAGTGTTCTTCTTGATCTTTTACCAGAGATTCCA 180
Query 437 TTATGGATGAAGAATCCAGATTATGAAAGAGTGGACTGGTTCAACAAATTTATCTCATAC 496
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TTGTGGATGAAGAATCCAGATTATGAAAGAGTGGACTGGTTTAACAAATTTATCTCATAC 240
Query 497 ATGTGGCCTTACCTCGATAAGGCTGTTTGCGGGATCATCCGGAGTTCTGTACAACCTT-T 555
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| || |
Sbjct 241 ATGTGGCCTTACCTCGATAACGCTGTTTGCGGTATCATCCGGAGTTCTGCACAAC-TTAT 299
Query 556 ATTTGCAGATTATATTGGCACCTTCTGTATAGAATCCATTGAGTTCGAAAATTTGAGTCT 615
||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTTGCAGATTTTGTTGGGACCTTCTGTATAGAATCCATTGAGTTCGAAAATTTGAGTCT 359
Query 616 TGGAACGCTTCCACCTACAGTTCACGG 642
|||| |||||||||| |||||||||||
Sbjct 360 TGGACCGCTTCCACCCACAGTTCACGG 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5