BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04250.1 Length=1461 Score E Sequences producing significant alignments: (Bits) Value Ahg939822 jgi|Araly1|939822|scaffold_600366.1 1696 0.0 Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1 63.9 3e-09 > Ahg939822 jgi|Araly1|939822|scaffold_600366.1 Length=1078 Score = 1696 bits (918), Expect = 0.0 Identities = 1005/1048 (96%), Gaps = 2/1048 (0%) Strand=Plus/Plus Query 207 TTTGAATAAATGGGGTATGAGCCTGATCCAGATGCTCTTAGGTGGGGTCTTCATGATCTG 266 ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct 12 TTTGAATAAATGGGGTATGAGCCTGATCCCGATGCTCTTCGCTGGGGTCTTCATGATCTG 71 Query 267 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCTGGT 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 72 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCAGGT 131 Query 327 GGTGGTGGTACTCAAGGCTATGTTAGAGAAGGTTACAATCAGCCTGTGACTGGTTATGTT 386 |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 132 GGTGCTGGTACTCAAGGCTATGTTAGAGAAGGTTATAATCAGCCTTTGACTGGTTATGTA 191 Query 387 GACAATGATGCGGTGATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 446 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 GACAATGATGCGGCAATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 251 Query 447 GAAGCATCGGGGATCAATAGTCTTAGTCCTACTTCTGTTGTTGCACAAGACTGGCCTCAT 506 ||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||| Sbjct 252 GAAGCATCGGGCCTCAATAATCTTAGTCCTACTTCTGTTGTTGAACAAGAGTGGCCTCAT 311 Query 507 CCTCATCAAGGACAGGAAAATCAAGGGGAAGCCATTGATATTA-CTCAGGAAAGTGATAT 565 |||| |||||| |||||||||||||||||||||||||||| || | | |||||||||||| Sbjct 312 CCTCGTCAAGGGCAGGAAAATCAAGGGGAAGCCATTGATA-TATCCCGGGAAAGTGATAT 370 Query 566 TCTTCATAATCATAACGGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTGAAGG 625 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 371 TCTTCATGATCATAACTGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTCAAGG 430 Query 626 AGGGCAAAGTTCCCCATCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 685 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 AGGACAAAGTTCCCCACCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 490 Query 686 ATCTTGGTCAGAGGTTGGGAAGCGACTGAACCAAATGATACCTATTGCTCATGTGCCGAA 745 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 491 ATCTTGGTCAGAGGTTGGGAAGCGACTGAATCAAATGATACCTATTGCTCACGTGCCGAA 550 Query 746 AATCAATGGGGAATTACCGTCAGAGGATGAGCAGATTTCTGATCATGAACGGCTATTTCA 805 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 551 AATCAATGGGGAATTACCGTCAGAGGATGAACAGATATCTGATCATGAACGGCTATTTCA 610 Query 806 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAACTGCCAGTT 865 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 611 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAATTGTCAGTT 670 Query 866 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACATCATAATTTTGTCAGAGAACA 925 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 671 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACACCATAACTTTGTCAGAGAACA 730 Query 926 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 790 Query 986 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 1045 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 850 Query 1046 GGCTGCTGCGGATTTGTTTGGTGTTCGGATGTTTGTGATAACTTCATTCAAGGATACATG 1105 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 851 GGCTGCTGCGGATTGGTTTGGTGTTCGGATGTTTGTGATAACGTCATTCAAGGATACATG 910 Query 1106 CTACATTGAGATCTTGCCTCATTTTCAGAAGTCTAATCGCCTTATATGTTTAAGCTTCTG 1165 ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 911 TTACATTGAGATCTTGCCGCATTTTCAGAAGTCTAATCGCCTTATATGTTTGAGCTTCTG 970 Query 1166 GGCTGAGGTTCATTACAATTCAATCTACCCTGAAGGAGAGCTGCCGATACCAGAAGGCAA 1225 ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 971 GGCTGAGGTTCATTACAATTCAATCTATCCTGAAGGAGAGCTGCCCATACCGGAAGGCAA 1030 Query 1226 GAAGAAGAAGAAATATTGGGTATTCTGA 1253 ||||||||||||||||||||| |||||| Sbjct 1031 GAAGAAGAAGAAATATTGGGTTTTCTGA 1058 > Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1 Length=830 Score = 63.9 bits (34), Expect = 3e-09 Identities = 46/51 (90%), Gaps = 4/51 (8%) Strand=Plus/Minus Query 1410 CAATAAAAGTTGTATTGATCTTATAAATAAG-A-G-GTTTACA-TTACATT 1456 ||||||||||||||||||||||||||||||| | | || |||| ||||||| Sbjct 830 CAATAAAAGTTGTATTGATCTTATAAATAAGTAAGAGTCTACAATTACATT 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54659501575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5