BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04310.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487211 jgi|Araly1|487211|fgenesh2_kg.6__345__AT5G04310.1 2495 0.0
> Ahg487211 jgi|Araly1|487211|fgenesh2_kg.6__345__AT5G04310.1
Length=1699
Score = 2495 bits (1351), Expect = 0.0
Identities = 1608/1725 (93%), Gaps = 45/1725 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGCTCATGAGAGGAGGATCCATAATCTTCAAAAACCAACGTGCATTTGCATTATC 60
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTGGCTCA--CGA-GAGGATCCATAATCTTCAAAAACCAACATGCATTTGCATTATC 57
Query 61 TGGTTTTGCCTCTTGGTTTCTCTCTCTCACCATGGAAGAG------CATCATCA--A-C- 110
|||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 58 TGGTTTTGCCTCTTGGTTTCTCTCTCTCACCATGGAAGAGCATCTTCATCATCATTATCA 117
Query 111 -C-TCAGCATCTATCTTCAATCTTTCTCTCCCACACCAACACCCATTCCCTGAACATGTT 168
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCATCATCATCTATCTTCAATCTTTCTCTCCCACACCAACACCCATTCCCTGAACATGTT 177
Query 169 GTTCTTAATGTTCAAAGAAAACTCAACGATTCTCTCTCAAGAAGACAACTTCTCACTTAC 228
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 GTTCTTAATGTTCAAAGAAAACTCAACGACTCTCTCTCAAGAAGACAACTTCTCACTTAC 237
Query 229 CAACAAGACGACGGCACCACGGCGTCGTCACCAATACCTTCTTGCATCACCGGAAACCCA 288
|||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 238 CAACAAGACGACTTCACGACGTCGTCGTCGCCAATACCTTCTTGCATCACCGGAAACCCA 297
Query 289 ATCGACGATTGTTGGCGCTGCGACCCAAACTGGTCGGCAAACCGCCAAAGACTCGCCGAT 348
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 298 ATCGACGATTGTTGGCGCTGCGACCCAAACTGGTCGGAAAATCGCCAAAGACTAGCCGAT 357
Query 349 TGCTCAATTGGTTTCGGACAAGGAACACTCGGAGGAAAAGGCGGTCAG-TTTTACCTCGT 407
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 358 TGCTCAATTGGTTTCGGACAAGGAACACTCGGAGGAAAAGGCGGTC-GCTTTTACCTCGT 416
Query 408 CACCGATTCCTCCGACAACGACGCAGCGAATCCAATTCCCGGAACTCTTCGACACGCCGT 467
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 417 CACCGATTCCTCCGACAACGACGCGGCGTATCCAATTCCCGGAACACTTCGACACGCCGT 476
Query 468 GATTCAGCCAGAACCACTATGGATCATCTTCTCCAGCGACATGGGAATCAAACTCAAACA 527
||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 477 GATTCAGCCGGAACCACTCTGGATCGTCTTCTCCAGCGACATGGGAATCACACTCAAACA 536
Query 528 CGAGCTCATCATCGGAAGCTACAAGACAATCGATGGAAGAGGCACGAATATCCAAATCAC 587
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 537 CGAGCTCATCATCGGAAGCTACAAAACAATCGATGGAAGAGGAACGAATATCCAAATCAC 596
Query 588 CGGCCATGGTTGCCTCACGATTCAGCAGGTTAGCCACGTCATCATCCACAACGTTCACAT 647
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 597 CGGCCATGGTTGCCTCACGATTCAGCAGGTGAGCCATGTCATCATCCACAACGCCCACAT 656
Query 648 TCACCACTGTAAACCCTCCGGCAACACTTTGGTCGCTTCGTCGCCTACACATGTTGGATT 707
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 657 TCACCACTGTAAACCCTCCGGCAACACTTTGGTCGCTTCGTCGCCTACACACGTCGGATT 716
Query 708 TCGAGGAGTCTCCGACGGAGACGGAATCTCAGTATCAGCTTCTCATCACATTTGGGTCGA 767
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 717 CCGAGGAGTCTCCGACGGAGACGGAATCTCAGTCTCAGCTTCGCATCACATTTGGGTCGA 776
Query 768 TCACTGTTCTCTCGGTTACTGTGCGGACGGACTCATCGACGTCATCCTCGCTTCCACCGC 827
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 TCACTGTTCTCTCGGTTACTGTGCTGACGGACTCATCGACGTCATCCTCGCTTCCACCGC 836
Query 828 CGTCACAATCTCCAACAACTATTTCTCTCATCACGACGAGGTTATGCTCCTAGGTCACGA 887
||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 837 CGTCACAATTTCCAACAACTATTTCTCTCATCACGACGAAGTTATGCTCTTAGGTCACGA 896
Query 888 CGACCGGTACACGGCTGATAAGGGGATGCAAGTAACAATTGCATTCAACCATTTCGGAGA 947
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGACCGGTATACGGCTGACAAGGGGATGCAAGTAACAATTGCATTCAACCATTTCGGAGA 956
Query 948 AGGGCTTGTTCAGAGGATGCCGCGGTGTAGGCACGGTTATATCCACGTGGTGAACAACGA 1007
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGGGCTTGTGCAGAGGATGCCGCGGTGTAGGCACGGTTATATCCACGTGGTGAACAACGA 1016
Query 1008 CTTCACGGCATGGGAAATGTATGCAATCGGCGGAAGTGCTAGCCCTACAATTAATAGTCA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTTCACGGCATGGGAAATGTATGCAATCGGCGGAAGTGCTAGCCCTACAATTAATAGTCA 1076
Query 1068 GGGTAACCGTTACACCGCACCTATTGATCCCAATGCCAAAGAGGTAACGAAGCGCGTGGA 1127
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1077 GGGTAACCGTTACACCGCACCTATTGATCCCAACGCCAAAGAGGTGACGAAGCGCGTGGA 1136
Query 1128 CTCAAACGAGAAACATTGGTCGGGATGGAACTGGAGAACGGAAGGTGACGTTATGGTTAA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCAAACGAGAAACATTGGTCGGGATGGAACTGGAGAACGGAAGGTGACGTTATGGTTAA 1196
Query 1188 CGGAGCTTTTTTCGTGCCGTCAGGTGACGGAGTGAGCCCAGCGTATGCCAGAGCCACCAG 1247
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1197 CGGAGCGTTTTTCGTGCCGTCAGGTGACGGAGTGAGCCCAGCGTACGCCAGAGCCACCAG 1256
Query 1248 TGTTCAGCCTAAAGCCGCCGCGATCATTGACCAGCTCACGGTCAATGCCGGCGTTTTCGG 1307
||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1257 TGTTCAGCCTAAAACCGCCGCCATCATTGACCAGCTCACGGTCAACGCCGGCGTCTTCGG 1316
Query 1308 CGATCCAAGTGGGAGAAACGGCCAAGGAGGAAGCTTTCCCGGAATTACGAACGGTGGTGG 1367
|||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 1317 CGATCCCAGTGGGAGAAACGGCCAAGGAGGAAGTTTTCCCGGAATAACGGACGGTGGTGG 1376
Query 1368 GACCATCACGCGCGGTTACAGTAAAAGTGGACCTGCCGGCGGTGGCAGCGGCAGTGACAG 1427
||||||||| ||||||||||||||||||||||| | ||||| |||||||| | | ||
Sbjct 1377 GACCATCACACGCGGTTACAGTAAAAGTGGACC--C-GGCGGCAGCAGCGGC-G--ATAG 1430
Query 1428 TGATGATGGGCTTTTCACATTGATATTCGGTAACAATAGCGGTGCGGTGGCTCTAAGGCC 1487
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1431 CGATGATGGCCTTTTCACAGTGATATTCGGTAACAATAGCGGAGCGGTGGCTCTAAGGCC 1490
Query 1488 GGGACAGGTCTGGTCGATTCTATTGAT--T-ATCATTTTATATTGGTATATTCCACACCA 1544
|||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||
Sbjct 1491 GGGACAAGTCTGGTCGATTCTATTGATCATTATCATTTTGTTTTGGTATATTCCACACCA 1550
Query 1545 TACGAGATCAT-AGTTTCATTATTGGTTCATAG--TTACaaaaaaaaaatgaaaagacaa 1601
|||||||| || | |||||||||||||| | || || || || | | ||
Sbjct 1551 TACGAGATGATGA-TTTCATTATTGGTT-AGAGGGTT-CAT--------TGTTAC-A-AA 1597
Query 1602 aaaaaCGAATATACAGATATATAGGTACACAGCACTTGCAAGTTGTAAAAATATGGGAAA 1661
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1598 AAAAA--AATATACAAATATATAGGTACACAGCACTTGCAAGTTGTAAAA-TATGGGAAA 1654
Query 1662 TGTATAAGATATTATAAATCTTGTTTGATGCCTAAACTATTTTGG 1706
||||||| ||||| | | |||||||||||||||||||| ||||||
Sbjct 1655 TGTATAAAATATTTTTATTCTTGTTTGATGCCTAAACTTTTTTGG 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5