BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04550.1 Length=2580 Score E Sequences producing significant alignments: (Bits) Value Ahg939856 jgi|Araly1|939856|scaffold_600400.1 2981 0.0 > Ahg939856 jgi|Araly1|939856|scaffold_600400.1 Length=1842 Score = 2981 bits (1614), Expect = 0.0 Identities = 1750/1817 (96%), Gaps = 4/1817 (0%) Strand=Plus/Plus Query 192 GGTTGAGAGAAGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 251 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9 GGTTGAGAGAGGATGGTTTCAGAGACTTGGTTTCGTAATCTGTGGAGGTTTCCAAAGAAA 68 Query 252 CATGATGGTCATAAAGATAAGGCGGTTCTAGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 311 ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 69 CATGATGTTCATAAAGATAAGGCGGTGCTCGGAGTATTAGCGTTTGAGGTTGCGAGTTTG 128 Query 312 TTGTCGAAGCTTGTTCATTTGTGGCAGTCATTAAGTGATAAGAATGTTGCAAGGCTTAGG 371 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 129 TTGTCGAAGCTTGTTCATTTGTGGCAGTCACTAAGTGATAAGAATGTTGCAAGGCTTAGG 188 Query 372 GACGAGATTACACATTCCACTGGTATAAAGAAGTTAGTTTCAGAAGATGATGATTTTATT 431 ||||||||||| |||||||| |||||||||||| |||||||||| || ||||||||||| Sbjct 189 GACGAGATTACGCATTCCACCGGTATAAAGAAGCTAGTTTCAGAGGACGATGATTTTATC 248 Query 432 GTGAGGTTAATACGTGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTGGCT 491 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 249 GTCAGGTTGATACGCGATGAAATGATGGAGAACGTTGAGAATGTAGCGAAAGCTGTTGCT 308 Query 492 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAGTGCTTTGAGAATTGTTTTAGTGAT 551 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 309 AGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAATGCTTTGAGAATTGTTTTAGTGAT 368 Query 552 ATGATGAAGACTGGAGCTGACCCTTATGGTTGGCAGTTTGGGTGGAAGAAAATGGATAAG 611 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 369 ATGATGAAGACTGGAGCTGACCCTTATGGGTGGCAGTTTGGGTGGAAGAAAATGGATAAG 428 Query 612 AAAGCTAAGAAAATGGAACGTTTCATATCATCTAATGCTAGTCTCTACCAGGAGACTGAG 671 ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||| Sbjct 429 AAAGCAAAGAAAATGGAACGTTTCATCTCATCAAATGCTAGCCTCTACCAGGAGACTGAG 488 Query 672 ATTCTTGCTGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCTACTGAC 731 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 489 ATTCTGGCCGATCTTGAACAGACTTTCAAGAGAATGAAGAGCAATGAATCTGCAACTGAC 548 Query 732 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACACGAAGTGAAGAATCTGCGG 791 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 549 AATCTTTTGGAGTATCAGAAAAAAGTTACATGGAAAAGACATGAAGTGAAGAATCTGCGG 608 Query 792 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCATTCTCTTGGTTAGATCAGTT 851 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 609 GATGTGTCTCTTTGGAACCGTACTTATGACTATACCGTCCTTCTCTTGGTTAGATCAGTT 668 Query 852 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGCATT-AGTTACAGAGTGGAAGCAAG 910 |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||| Sbjct 669 TTCACAATCCTTAGCAGGACTAAACATGTTTTTGGC-TTGAGTTACAGAATGGAAGCAAG 727 Query 911 TGATGTTAGCTCTGCAGATTCTGATTTTATTGGCCGCAGCCACTCCGTTTCTACTATTTT 970 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 728 TGATGTTAGCTCTGCAGATTCTGATTTCATTGGCCGCAGCCACTCGGTTTCTACAATTTT 787 Query 971 AACTCCTGTATCTCATAAATCTGAGTCTAGTGGTCTTCCTAGATTTGCTTCTGGCCCCCT 1030 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| Sbjct 788 AACTCCTGTATCTCATAAATCTGAGACTAGCGGTCTTCCTAGATTTGCTTCTGGTCCCCT 847 Query 1031 TGGAAGATTTACCGGTCCAGCATCGGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 1090 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 848 TGGAAGATTTACCGGTCCAGCATCAGGTTCAGCTGCTACAAGGTCCACGAAGATGAGTGA 907 Query 1091 TTTCCTTTCGGGTTCTCTCAGCGCCGAATCACCTAAGTCAGGTCCTCTTGTTGCAGAAAA 1150 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 908 TTTCCTTTCCGGTTCTCTCAGCGCCGAATCCCCTAAGTCAGGTCCTCTTGTTGCAGAAAA 967 Query 1151 ACACAAACGTTTCAAGTTTTACTCTGGTCAGCTTGGGAAGATCACCTCCAAATCAGGACC 1210 |||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct 968 ACACAAACGTTTCAAGTTTTACTCAGGCCAGCTCGGGAAAATCACCTCCAAATCAGGACC 1027 Query 1211 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACCCCGGAAAGGCCTTCAAT 1270 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1028 ACTTATCGGAATGGGCAAAAACAACAAGAAGATGGGGCAGACACCGGAAAGACCTTCAAT 1087 Query 1271 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGATTAACACAGGTTGGCCCATTTAAAGG 1330 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1088 TTCCTCAGTGAAAAAGCAATTGAAAGCCAACCGGTTAACACAGGTTGGCCCGTTTAAAGG 1147 Query 1331 CTGTATGGTGTCTCACGATGGGATTACGCCTCTCAGCACTAGGGCCCGGAATGGAGCTAG 1390 ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 1148 CTGTATGGTGTCTCACGATGGGATTACTCCTCTCAGCACTAAGACCCGGAATGGAGCTAG 1207 Query 1391 GAATAGTAGTGCTGAGCATCACATTCTTGAA-GATAATTCTAACTCTGTTCACGTTGAAA 1449 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 1208 GAATAGTAGTGCTGAGCATCACATTCTTGAAGGA-AATTCTAACTCTGTCCACGTTGAAA 1266 Query 1450 ACTTGACACTTCCTTCCCGACCCAAGCTGTCAGATGCTGCTCCTAATACCCTTGGTACCG 1509 |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | | Sbjct 1267 ACTTGACACTTCCTACCCGACCTAAGTTGTCAGATGCTGCTCCTAATACCCTTGGTGCAG 1326 Query 1510 CTTGCTTAGCATTACACTATGCTAATGTCATCATCGTGATAGAGAGATTTGTTGCGTCTC 1569 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1327 CTTGCTTAGCATTACACTATGCAAATGTCATCATCGTGATAGAGAGATTTGTTGCATCTC 1386 Query 1570 CTCACTTGATAGGAGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1629 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1387 CTCACTTGATAGGCGATGATGCAAGAGACGACCTTTACAACATGTTACCGGCGAGCGTGA 1446 Query 1630 GAACATCGCTTAGAGAAAGGCTAAAACCTTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1689 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1447 GAACATCGCTTAGAGAAAGGCTAAAACCGTACTCGAAAAACTTGAGTTCTTCCACAGTTT 1506 Query 1690 ATGATCCAGGCCTAGCAAGAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1749 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1507 ATGATCCAGGACTAGCAAAAGAATGGACAGACGCAATGGCGGGTATCTTGGAATGGTTGG 1566 Query 1750 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567 GTCCATTAGCTCACAACATGATAAAATGGCAATCTGAGCGGAGTTACGAGCACCAAAGCT 1626 Query 1810 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1627 TGGTTTCAAGGACGCACATAGTTCTTGCACAAACCCTTTTCTTTGCAAACCAGCAGAAGA 1686 Query 1870 CAGAAGCCATCATTACCGAGCTTCTCGTAGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1929 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1687 CAGAAGCCATCATTACCGAGCTTCTTGTTGGCCTCAATTATGTCTGGAGATTTGGCAGAG 1746 Query 1930 AACTCAATGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1989 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1747 AACTTAACGCCAAGGCTCTTCAGGAGTGTACCAGTAGTAAAACCCTTGAGAAATGCTTGG 1806 Query 1990 ACACAGATAACTAGTGA 2006 ||||||||||||||||| Sbjct 1807 ACACAGATAACTAGTGA 1823 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97282485730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5