BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04670.1
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939865 jgi|Araly1|939865|scaffold_600409.1 3681 0.0
> Ahg939865 jgi|Araly1|939865|scaffold_600409.1
Length=2342
Score = 3681 bits (1993), Expect = 0.0
Identities = 2229/2340 (95%), Gaps = 28/2340 (1%)
Strand=Plus/Plus
Query 1 ATGCCGTCGGTGGGAATGAGACGAACCACTAGGGTTTTCGGGGTGGTTAAAGCCGCAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGCCGTCGGTGGGAATGAGACGAACCACTAGGGTTTTCGGGGTGGTTAAAGCCGCAGAC 80
Query 61 GGAGCCCGTGTCCTCCGTTCGGGTCGCCGGATCTGGCCTAACGTTGGCGAGCCAAAGGTA 120
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 81 GGAGCCCGTGTCCTCCGTTCGGGTCGTCGGATCTGGCCTAACGTCGGCGAACCAAAGGTA 140
Query 121 CGGCGAGCTCATGACGTGGTGGATCGAGATTGTGATAGCGTTTTGAAGAATCAGAACAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CGGCGAGCTCATGACGTGGTGGATCGAGATTGTGATAGCGTTTTGAAGAATCAGAACAAA 200
Query 181 TCCAAAGGCAATAAAGTCTCCTCCGGTAAAAGTAACAGCCAGCCTTGTAGCCCGAAACAA 240
||||||| ||||||| | |||||| |||||||||||||||||||||||||| ||||
Sbjct 201 ACCAAAGGGAATAAAG--T-CTCCGG---AAGTAACAGCCAGCCTTGTAGCCCGAGACAA 254
Query 241 GTTTCTAGTGAGAAAGAAGACAAAGTAGATGACTTTCCGGTCACAAAACGGAGGAAAGTG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 255 GTTTCTAGTGAGAAAGAAGACAAAGTAGATGACTTTCCGGTCAGAAAACGGAGGAAAGTG 314
Query 301 AGAAATGAAGGTGTAGGGGATGAAAAGACTGTGGATAAGATGTTTGGGATTGTATATAGT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGAAATGAAGGTGTAGGAGATGAAAAGACTGTGGATAAGATGTTTGGGATTGTATATAGT 374
Query 361 AGGAAAAGGAAGAGACTTTGTGAACCATCATCAAGTGATAGATCAGAAGAGCCACTACGA 420
||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||
Sbjct 375 AGGAAAAGGAAGAGACTTTCTGAA-C--CATCAAGTGATAGATCAGAAGTGCCACTACGA 431
Query 421 AGCCTGAAGTTTTATCGCAGGCGAAGAAAACTCTCACAACGGGTTTCTTCAGTGCTTACT 480
||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 432 AGCCTCAAGTTTTATCGCAGGCGAAGAAGACTCTCACATCGGGTTTCTTCAGTGCTTACT 491
Query 481 CTTACAGTAGATTGGTCATGTGAGGATTGCTGGTTTTTAACTGTTTTCGGTTTGGCAATG 540
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 492 CTTACAGTAGATTGGTCATGTGAGGATTGCTGGTTATTAAGTGTTTTCGGTTTGGCAATG 551
Query 541 AGATATATAAGGAGGGAAGAACTCAGGCTGTCTTCACTTGCGTCTTTCTTCTTGTCTCAA 600
||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 552 AGATATACGAGGAGGGAAGAACTGAGGCTGTCTTCTCTTGCTTCTTTCTTCTTGTCTCAA 611
Query 601 CCTATCAACCAAGTGTTTGCAGACCATGGCGTGCGATTCCTTGTGAGGTCTCCCCTTAGC 660
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 612 CCTATCAACCAAGTGTTTGCAGACCATGGCGTGCGATTCCTTGTGAAGCCTCCTCTTAGC 671
Query 661 TCAAGGGGTGTCTGCAAGTTTTTTGGGGCCATGAGTTGTCTACCTCTCTTTTCAGCAGAT 720
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 672 TCAAGGGGTGTCTGCAAGTTCTTTGGGGCCATGAATTGTCTACCTCTCTTTTCAGCAGAT 731
Query 721 TTTGCTGTCATTCCTCGATGGTTCATGGATATGCATTTCACTCTATTT-GTAAGAGT-TC 778
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |
Sbjct 732 TTTGCTGTCATTCCTCAATGGTTCATGGATATGCATTTCACTCTATTTCG-AAGAGTGGC 790
Query 779 TACCACGCTCCTTCTTTTTCGTAGAGAAATCTCTGTATTTGCTAAACAATCCGATTGAAG 838
||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 791 -ACCACGCTCTTTCTTTTTTGTAGAGAAATCTCTGTATTTGCTAAACAATCCAATTGAAG 849
Query 839 AATCAGATTCCGAGTCTGAATTAGCTTTACCTGAACCTTGTACTCCGAGGAATGGAGTTG 898
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 850 AATCTGATTCGGAGTCTGAATTAGCTTTACCTGAACCTTGTACTCCGAGGAATGGAGGTG 909
Query 899 TAGTTGGGTTACATCCATCAGTGAGAGCCTCGAAGTTAACGGGAGGAAATGCTCAGTATA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 910 TAGTTGGGTTACATCCATCAGTGAGAGCCTCGAAGTTAACGGGAGGAAATGCTCAATATA 969
Query 959 GAGGCAATTTAGGTTCTCACAGTTTCCAAAAGAGGAGAAGCTCTTTGAGAAGGAGAAGAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GAGGCAATTTAGGTTCTCACAGTTTCCAAAAGAGGAGAAGCTCTTTGAGAAGGAGAAGAG 1029
Query 1019 CAAGAAATCTTTCTCATAATGCACACAAGTTGAACAATGGAACACCTGTTTTTGATATAT 1078
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1030 CAAGAAATCTTTCTCACAATGCACACAAGTTGAACAATGGAACACCGGTTTTTGATATAT 1089
Query 1079 CGGGAAGTAGGAAAAACAGGACAGCAGCAGTATCATCGAAAAAGCTTAGAAGTTCGGTGC 1138
| |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct 1090 CAGGAAGTAGGAAAAACAGGACAGCAGCAGTATCGTCGAGAAAGCTTAGAAGCTCGGTGC 1149
Query 1139 TAAGTAACTCATCTCCGGTTTCAAATGGGATAAGTATCATTCCAATGACGAAGACAAAAG 1198
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1150 TAAGTAACTCATCTCCGGTTTCAAATGGGATTAGTATCATTCCATTGACGAAGACAAAAG 1209
Query 1199 AGGAACTTGATTCTATATGTTGTTCTGCGAATATATTGATGATACATTCAGACAGATGCA 1258
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 AGGAACTTGATTCTTTATGTTGTTCTGCGAATATATTGATGATACATTCAGACAGATGCA 1269
Query 1259 CCAGAGAAGAAGGATTTAGTGTCATGTTGGAGGCTTCGTCTTCGAAGGAGTGGTTCCTTG 1318
|||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1270 CCAGAGAAGAAGGATTTACTGTCATGTTGGAGGCGTCGTCTTCAAAGGAGTGGTTCCTTG 1329
Query 1319 TTATTAAGAAAGATGGGGCAATCAGATACAGCCACATGGCACAAAGGACTATGAGACCTT 1378
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1330 TTATTAAGAAAGATGGGGCAATCAGATACAGCCACAGGGCACAAAGGACTATGAGACCTT 1389
Query 1379 -TCTCTAGCAACCGGATTACACATGCCACAGTATGGATGGGAGGTGATAATTGGAAGCTT 1437
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GT-TCTTGCAACCGGATTACACATGCCACAGTATGGATGGGAGGTGATAATTGGAAGCTT 1448
Query 1438 GAGTTTTGTGACAGACAAGATTGGCTTGGTTTTAAAGATATATATAAAGAATGCTATGAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GAGTTTTGTGACAGACAAGATTGGCTTGGTTTTAAAGATATATATAAAGAATGCTATGAA 1508
Query 1498 CGGAATCTATTGGAACAGAGTGTGAAAGTCATTCCTATTCCTGGGGTCAGAGAAGTGTGT 1557
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CGGAATGTATTAGAACAGAGTGTGAAAGTCATTCCTATTCCTGGGGTCAGAGAAGTGTGT 1568
Query 1558 GGATATGCAGAGTATATCGATAATTTCCCCTCCTTTTCTAGGCCACCAGTTTCATATATA 1617
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1569 GGATATGCAGAGTATATCGATAATTTTCCCTCCTTTTCTAGGCCA---GTTTCATATATA 1625
Query 1618 TCTGTGAACGAAGATGAGGTTTCAAGGGCCATGGCTCGAAGTATTGCTCTTTATGACATG 1677
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1626 TCTGTGAACGAAGATGAGGTTTCAAGGGCCATGGCTCGAGGTATTGCTCTTTATGACATG 1685
Query 1678 GATTCTGAAGATGAAGAGTGGCTCGAAAGGCAGAACCAGAAAATGCTCAATGAAGAGGAT 1737
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1686 GATTCTGAAGATGAAGAGTGGCTCGAAAGGCAGAACCGGAAAATGCTCAGTGAAGAGGAT 1745
Query 1738 GACCAATATCTACAACTTCAGCGGGAAGCTTTTGAGTTGATGATTGATGGGTTTGAAAAG 1797
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 GACCAATTTCTACAACTTCAGCGGGAAGCTTTTGAGTTGATGATTGATGGGTTTGAAAAG 1805
Query 1798 TATCATTTCCATAGCCCTGCCGATGATCTCTTGGATGAAAAAGCAGCCACTATAGGTAGT 1857
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1806 TATCATTTCCATAGCCCTGCCGATGATCTCTTAGATGAAAAAGCAGCCACTATAGCTAGT 1865
Query 1858 ATTTCATATCTGGGTAGGCAAGAGGTGGTTGAGGCGGTACATGATTACTGGTTGaaaaaa 1917
|||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1866 CTTTCGTATCTGGGTAGGCAAGAGGTGGTTGAAGCAGTACACGATTACTGGTTGAAAAAA 1925
Query 1918 aGGAAGCAGCGAAAAGCACCACTCCTCAGAATTTTCCAGGGTCATCAAGTGAAGAAAACG 1977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 AGGAAGCAGCGAAAGGCACCACTCCTCAGAATTTTCCAGGGTCATCAAGTGAAGAAAACG 1985
Query 1978 -CAGCTACTTTCCAAACCTGTGTTTCGTAAAAGAAGGTCCTTCAAAAGACAGGGGAGTCA 2036
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1986 AC-GCTACTTTCCAAACCTGTGTTTCGTAAAAGAAGATCCTTCAAAAGACAGGGGAGTCA 2044
Query 2037 ACTCCATGGAAAAGCCAAACAGACAAGCCCTTGGATGGTGGCTGTAAAGGCGGCAGAACC 2096
|||||||||||||||||||||||||||||||||||| ||| ||||||| ||| | |||||
Sbjct 2045 ACTCCATGGAAAAGCCAAACAGACAAGCCCTTGGATCGTGACTGTAAAAGCGACTGAACC 2104
Query 2097 AGAGGAAGAAGACGAT-ATTCTCAGAATGGAAGAAGCCAAAGTTTTGGCTGATAAAACCA 2155
||||||| || ||||| || |||||||||||||||||||||||||| ||||||| |||||
Sbjct 2105 AGAGGAACAAAACGATTAT-CTCAGAATGGAAGAAGCCAAAGTTTTTGCTGATAGAACCA 2163
Query 2156 TGGAAACTGCCATAGCCAAAAGAAGACGAGCACAAATTCTTGCAGAAAACGCAGATCTTG 2215
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2164 TGGAAACTGCCATAGCCAAAAGAAGACGAGCACAAGTTCTTGCAGAAAACGCAGAT-TTG 2222
Query 2216 -CTGTTTACAAAGCAATGAG-GGCTCTCAGGATTGCAGAAGCCATTAAGGAAGCCGAATC 2273
||||||||||||| || | ||||||||||||||||||||||||||| ||||| |||||
Sbjct 2223 GCTGTTTACAAAGCGGTG-GTGGCTCTCAGGATTGCAGAAGCCATTAAAGAAGCTGAATC 2281
Query 2274 GAGGGAGGTGGACACAACCGTTGTCTAGAACTGAAATGGTAAAGATAGAAAATGTTACTG 2333
||||||||||||||||||| ||| | | ||||||||||||| ||| |||||||||||||
Sbjct 2282 GAGGGAGGTGGACACAACCACTGT-T-GCACTGAAATGGTAACGATGGAAAATGTTACTG 2339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92711656330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5