BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04770.1 Length=1917 Score E Sequences producing significant alignments: (Bits) Value Ahg487256 jgi|Araly1|487256|fgenesh2_kg.6__390__AT5G04770.1 2950 0.0 Ahg317861 jgi|Araly1|317861|fgenesh1_pm.C_scaffold_3000877 1417 0.0 > Ahg487256 jgi|Araly1|487256|fgenesh2_kg.6__390__AT5G04770.1 Length=1850 Score = 2950 bits (1597), Expect = 0.0 Identities = 1769/1854 (95%), Gaps = 4/1854 (0%) Strand=Plus/Plus Query 20 CCGACCCGACCCGAATCTGGCCGGTGAGAAAATGGAGGTCCAAAGCAGCAGCAACAATGG 79 |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1 CCGAACCGACCCGAATCTTGCCGGTGAGAGAATGGAGGTCCAAAGCAGCAGCAACAATGG 60 Query 80 TGGTCACTCTTCTTTCTCCAGTCTCCGCGTCTACCTCAACTCTCTTTCCGCGACGCCTTC 139 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGGTCACTCTTCTTTCTCCAGTCTCCGCGTCTACCTCAACTCTCTTTCCGCGACGCCTTC 120 Query 140 TCGCTTATCCCGCCGCGCTATTTCCGTCTCCACCTCTTCCGACGAGATGAGTCGCGTCCG 199 ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 121 TCGTTTATCCCGCCGCGCTATTTCCGTCTCCACTTCTTCCGACGAGATGAGTCACGTCCG 180 Query 200 CGCCGTCTCCGGCGAACAGATGCGCCGTACTCTCCGGTGGTACGATCTCATTGGACTCGG 259 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 CGCCGTCTCCGGCGAACAGATGCGCCGTACTCTCCGATGGTACGATCTCATTGGACTCGG 240 Query 260 AATCGGGGGAATGGTCGGCGCCGGTGTCTTTGTCACCACCGGCCGTGCTAGTCGTCTCGA 319 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 241 AATCGGCGGAATGGTCGGCGCCGGTGTTTTTGTCACCACCGGCCGTGCCAGTCGTCTCGA 300 Query 320 CGCCGGTCCTTCAATTGTCGTCTCTTACGCCATCGCCGGGCTCTGCGCTCTCCTCTCCGC 379 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 301 CGCCGGTCCTTCAATCGTCGTCTCTTACGCCATCGCTGGACTCTGCGCTCTCCTCTCCGC 360 Query 380 TTTCTGTTACACCGAATTCGCCGTCCATCTCCCGGTCGCCGGCGGTGCCTTCAGCTACAT 439 |||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 361 TTTCTGTTACACTGAATTCGCCGTACATCTCCCCGTCGCCGGCGGCGCCTTCAGCTACAT 420 Query 440 CCGTATCACATTCGGTGAATTTCCAGCATTTTTCACCGGAGCAAATCTTGTAATGGATTA 499 |||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| || Sbjct 421 CCGTATCACATTCGGTGAGTTTCCTGCATTCTTCACCGGAGCGAATCTTATAATGGACTA 480 Query 500 CGTAATGTCAAACGCGGCCGTTTCGAGAAGCTTCACCGCTTATTTAGGAACAGCTTTCGG 559 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGTAATGTCAAACGCCGCCGTTTCGAGAAGCTTCACCGCTTATTTAGGAACAGCTTTCGG 540 Query 560 GATCTCAACTTCCAAGTGGCGATTCGTCGTCTCCGGTTTACCGAAAGGATTCAACGAGAT 619 ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 541 GATCTCAACATCCAAGTGGCGATTCGTCGTCTCCGGTCTACCAAAAGGATTCAACGAGAT 600 Query 620 TGATCCAGTCGCAGTTCTCGTCGTCCTCGTAATCACAGTCATCATCTGTTGCAGTACAAG 679 ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 601 CGATCCAGTCGCCGTTCTCGTAGTCCTCGTAATCACAGTCATCATCTGTTGCAGTACAAG 660 Query 680 AGAGAGTTCCAAAGTGAACATGATAATGACTGCATTTCACATCGCATTCATATTCTTCGT 739 |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 AGAGAGCTCGAAGGTGAACATGATAATGACTGCATTTCACATCGCATTCATATTCTTCGT 720 Query 740 GATCGTGATGGGATTCATAAAAGGAGATTCAAAGAATCTATCCTCACCGGCGAATCCAGA 799 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 721 GATCGTGATGGGGTTCATAAAAGGAGATTCAAAGAATCTTTCCTCACCGGCGAATCCAGA 780 Query 800 GCACCCCTCGGGATTTTTTCCGTTCGGCGCGGCGGGAGTTTTCAACGGAGCTGCCATGGT 859 ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCATCCGTCGGGGTTTTTTCCGTTCGGCGCGGCGGGAGTTTTCAACGGAGCTGCCATGGT 840 Query 860 TTACTTAAGCTACATAGGATACGACGCCGTTTCAACCATGGCGGAAGAAGTTGAAAATCC 919 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 841 TTACTTAAGCTACATAGGATACGACGCCGTTTCAACCATGGCGGAGGAAGTAGAAAATCC 900 Query 920 GGTCAAAGATATCCCCGTCGGTGTTTCCGGCTCCGTCGCAATCGTCACCGTTCTTTACTG 979 || ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 901 CGTTAAAGACATCCCCGTCGGTGTCTCCGGCTCCGTCGCAATCGTCACCGTCCTCTACTG 960 Query 980 TCTCATGGCAGTCTCTATGTCAATGCTTCTGCCATACGATCTGATAGATCCGGAGGCGCC 1039 ||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 961 TCTCATGGCCGTCTCCATGTCAATGCTTCTCCCATACGATATGATAGATCCGGAGGCGCC 1020 Query 1040 GTTTTCCGCGGCGTTCAGAGGATCGAACGGCTGGGAATGGGTGACGAAAGTGGTGGGGAT 1099 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 GTTTTCTGCGGCGTTCAGAGGATCGAACGGCTGGGAATGGGTGACGAAAGTGGTGGGGAT 1080 Query 1100 AGGAGCAAGCTTTGGGATATTAACATCACTTTTGGTGGCAATGTTAGGTCAGGCTCGCTA 1159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 AGGAGCAAGCTTTGGGATATTAACATCACTTTTGGTGGCAATGTTAGGTCAGGCTCGCTA 1140 Query 1160 CATGTGTGTCATCGGACGGTCCAGAGTGGTCCCCTTTTGGTTCGCTAAGATTCATCCCAA 1219 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1141 CATGTGTGTCATCGGACGGTCCAGAGTGGTCCCCTTTTGGTTCGCCAAGATTCATCCCAA 1200 Query 1220 AACATCTACGCCAGTCAACGCCTCCACTTTTCTTGGCATTTTCACGGCGGCTCTTGCGCT 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AACATCTACGCCAGTCAACGCCTCCACTTTTCTTGGCATTTTCACGGCGGCTCTTGCGCT 1260 Query 1280 TTTCACCGACCTAAACGTCCTCCTAAACCTCGTATCCATTGGAACACTATTTGTCTTCTA 1339 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1261 TTTCACCGACCTAAACGTCCTCCTAAACCTCGTCTCCATTGGAACACTATTTGTCTTCTA 1320 Query 1340 CATGGTCGCAAACGCTCTCATCTTCAGACGTTACGTCCCGGTTGGACCCACCAAGCCGTG 1399 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || Sbjct 1321 CATGGTCGCAAACGCTCTCATCTTCAGACGTTACGTCCCCGTCGGACCCACCAAGCCATG 1380 Query 1400 GCCCACACTCTGCTTCCTCACACTATTCTCCATAACCTCTCTCGTCTTCACCCTCATCTG 1459 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1381 GCCCACACTCTGCTTCCTCACACTATTCTCCATAACCTCTCTTGTCTTCACCCTCATCTG 1440 Query 1460 GAAACTTGTGCCGGAAGGTAAGCCTAAAGCTTTCATGCTCGGTGCCAGTGCGGTGGTGGC 1519 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1441 GAAACTTGTGCCGGAAGGCAAGCCTAAAGCTTTCATGCTCGGTGCCAGCGCGGTGGTGGC 1500 Query 1520 TATAGCCATCGTGCTGAGCTTTCAGTGCGTGGTTCCCCAGGCTAGGAAACCTGAGTTGTG 1579 ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || Sbjct 1501 TATAGCCATCGTGCTGATCTTCCAGTGCGTGGTTCCCCAGGCTAGGAAACCCGAGTTATG 1560 Query 1580 GGGAGTCCCGTTCATGCCGTGGACCCCGTGCGTGTCGATATTCTTGAACAtttttttGCT 1639 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1561 GGGAGTCCCATTCATGCCGTGGACCCCGTGCGTGTCGATTTTCTTGAACATTTTTTTGCT 1620 Query 1640 TGGTTCGTTGGACGCACCCTCTTACGTCCGGTTTGGATTCTTCTCCGGTTTGATCGTGCT 1699 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 1621 TGGTTCGTTGGACGCACCCTCTTACGTCCGTTTTGGCTTCTTCTCCGGTTTGATTGTGCT 1680 Query 1700 CGTGTATTTGTTTTATGGCGTTCATGCGAGTTCTGATGCTGAAGCGAATGGATCTTTTGG 1759 |||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1681 CGTGTATTTGCTTTATGGCGTTCATGCGAGTTCTGATGCTGAAGCCAATGGGTCTTTTGG 1740 Query 1760 TGTGAAAGATGGACAAGTCATGAAAGAGCTAATTGAAGTGTGAAAAGTATTTATTTAGTT 1819 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1741 TGTGAAAGATGGACAAGTCATGAAAGAGCTAACCGAAGTGTGAAAAGTATTTATTTAGTT 1800 Query 1820 TAGTTTTCTAAAGCATCATGAACCAAAATGTAATTAAACTCTCTAAtttttttt 1873 |||||||||||| || | | | | | ||||||||||||||||| ||| |||| Sbjct 1801 TAGTTTTCTAAAACAAC-T-AGCTTA--TGTAATTAAACTCTCTAGTTTCTTTT 1850 > Ahg317861 jgi|Araly1|317861|fgenesh1_pm.C_scaffold_3000877 Length=1755 Score = 1417 bits (767), Expect = 0.0 Identities = 1411/1720 (82%), Gaps = 51/1720 (3%) Strand=Plus/Plus Query 93 TTCTCCAGTCTCCGCGTCTACCTCAACTCTCTTTCCG-CGACGCCTTCTCGCTTATCCCG 151 ||||| || ||||| ||||||||||||||||| |||| | || || || || || ||||| Sbjct 40 TTCTCTAGCCTCCGTGTCTACCTCAACTCTCTCTCCGAC-ACTCCCTCCCGTTTTTCCCG 98 Query 152 CCGCGCTATTTCCGTCTCCACCTCTTCCGACGAGATGAGTCGCGTCCGCGCCGTCTCCGG 211 |||||| ||||||| |||||||||| |||||||||||| |||||||||||||||||||| Sbjct 99 CCGCGCCGTTTCCGTTTCCACCTCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGG 158 Query 212 CGAACAGATGCGCCGTACTCTCCGGTGGTACGATCTCATTGGACTCGGAATCGGGGGAAT 271 ||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || ||||| Sbjct 159 CGAGCAGATGCGCCGCACTCTCCGTTGGTACGATCTCATCGGACTCGGAATTGGCGGAAT 218 Query 272 GGTCGGCGCCGGTGTCTTT-GTCACCACCGGCCGTGCTAGTCGTCTCGACGCCGGTCCTT 330 | |||| ||||| || ||| ||||||||||||||||||||||||||| |||| ||||| | Sbjct 219 GATCGGAGCCGGCGT-TTTCGTCACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCAT 277 Query 331 CAATTGTCGTCTCTTACGCCATCGCCGGGCTCTGCGCTCTCCTCTCCGCTTTCTGTTACA 390 |||| || ||||| ||||| ||||| || |||| ||||||||||||||| |||||||||| Sbjct 278 CAATCGTTGTCTCCTACGCAATCGCTGGACTCTCCGCTCTCCTCTCCGCCTTCTGTTACA 337 Query 391 CCGAATTCGCCGTCCATC-TCCCGGTCGCCGGCGGTGCCTTCAGCTACATCCGTATCACA 449 |||| ||||||||||| | |||| |||||||||||||| ||||||||||||||||||||| Sbjct 338 CCGAGTTCGCCGTCCACCTTCCC-GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACA 396 Query 450 TTCGGTGAATTTCCAGCATTTTTCACCGGAGCAAATCTTG-TAATGGATTACGTAATGTC 508 ||||| || || || || ||| | ||||||||||||| || ||||||| ||||||||||| Sbjct 397 TTCGGCGAGTTCCCGGCGTTTATAACCGGAGCAAATC-TGATAATGGACTACGTAATGTC 455 Query 509 AAACGCGGCCGTTTCGAGAAGCTTCACCGCTTATTTAGGAACAGCTTTCGGGATCTCAAC 568 |||||| |||||||| ||| ||||||| |||||| | ||| | |||||||| |||||| | Sbjct 456 AAACGCCGCCGTTTCAAGAGGCTTCACAGCTTATCTCGGATCTGCTTTCGGAATCTCAGC 515 Query 569 TTCCAAGTGGCGATTCGTCGTCTCCGGTTTACCGAAA-GGATTCAACG-AGATTGATCCA 626 || ||||| ||||| ||||||||||| | || ||| |||||||||| | || |||||| Sbjct 516 ATCGGAGTGGAGATTCATCGTCTCCGGTCT-CCCAAACGGATTCAACGTA-ATCGATCCA 573 Query 627 GTCGCAGTTCTCGTCGTCCTCGTAATCACAG-TCATCATCTGTTGCAGTACAAGAGAGAG 685 |||| ||| ||||||||||| |||| | ||||||| |||| |||||| |||||||| Sbjct 574 ATCGCCGTTATCGTCGTCCTCACCGTCAC-GTTCATCATTTGTTACAGTACGAGAGAGAG 632 Query 686 TTCCAAAGTGAACATGATAATGACTGCATTTCACATCGCATTCATATTCTTCGTGATCGT 745 ||| || ||||| ||| | | || || || ||||| |||||| || | ||||||||||| Sbjct 633 TTCGAAGGTGAATATGGTTTTAACGGCGTTACACATTGCATTCTTAGTATTCGTGATCGT 692 Query 746 GATGGGATTCAT-AAAAGGAGA-TTCAAAGAATCTATCCTC-ACCGGCGAATCCAGAGCA 802 ||||| ||| | |||||||| | |||||||||| || | ||| | || || || | Sbjct 693 CATGGGTTTC-TGGAAAGGAGACAT-AAAGAATCTAACC-CGACCCGATAACCCGGAAAA 749 Query 803 CCCCTCGGGATTTTTTCCGTTCGGCGCGGCGGGAGT-TTTCAACGGAGCTGCCATGGTTT 861 || || ||||| || |||||||| | |||| || ||| |||||||| || ||||||| Sbjct 750 TCCATCCGGATTCTTCCCGTTCGGGGTTTCGGGTGTGTTT-AACGGAGCAGCAATGGTTT 808 Query 862 ACTTAAGCTACATAGGATACGACGCCGTTTCAACCATGGCGGAAGAAGTTGAAA-ATCCG 920 || |||||||||||||||||||||||||||| || ||||| |||||||| ||| | ||| Sbjct 809 ACCTAAGCTACATAGGATACGACGCCGTTTCGACAATGGCTGAAGAAGTA-AAAGACCCG 867 Query 921 GTCAAAGATATCCCCGTCGGTGTTTCCGGCTCCGTCGCAATCGTCACCGTTCTTTACTGT 980 |||||||| || || | || | || ||||| ||||||||||||| || ||||||||| Sbjct 868 GTCAAAGACATACCAATGGGAATCTCTGGCTCGGTCGCAATCGTCATTGTACTTTACTGT 927 Query 981 CTCATGGC-AGTCTCTATGTCAATGCTTCTGCCATACGATCTGATAGATCCGGAGGCGCC 1039 | ||||| | ||||||||||||||||||| || |||||||||||||||||||| || || Sbjct 928 TTAATGGCTA-TCTCTATGTCAATGCTTCTCCCGTACGATCTGATAGATCCGGAAGCACC 986 Query 1040 GTTTTCCGCGGCGTTCAG-AGGATCG-AACGGCTGGGAATGGGTGACGAAAGTGGTGGGG 1097 || || || ||||| || | |||| || || ||||||||||||||||||| ||| ||| Sbjct 987 GTACTCGGCCGCGTTTAGTAA-ATCGGAA-GGATGGGAATGGGTGACGAAAGCGGTAGGG 1044 Query 1098 ATAGGAGCAAGCTTTGGGATATTAACATCACTT-TTGGTGGCAATGTTAGGTCAGGCTCG 1156 ||||||||||| |||||||||||||| || || || || || ||||| ||||||||||| Sbjct 1045 ATAGGAGCAAGTTTTGGGATATTAACGTCG-TTGTTAGTAGCCATGTTGGGTCAGGCTCG 1103 Query 1157 CTACATGTGTGTCATCGGACGGTCCAGAGTGGTCCCCTTTTGGTTCGCTAAGATTCATCC 1216 ||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| Sbjct 1104 GTACATGTGTGTCATCGGACGGTCAAGAGTTGTCCCCATTTGGTTCGCTAAGGTTCATCC 1163 Query 1217 CAAAACATCTACGCCAGTCAACGCCTCCACTTTTCTTGGCATTTTCACGGCGGCTCTTGC 1276 ||| |||||||| ||||||||||| ||| |||||||||| || ||||||||| ||| || Sbjct 1164 CAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCTTGGAATCTTCACGGCGTTTCTCGC 1223 Query 1277 GCTTTTCACCGACCTAAACGTCCTCCTAAACCTCGTATCCATTGGAACACTATTTGTCTT 1336 || ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| Sbjct 1224 CCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGTGTCCATTGGAACGCTATTCGTCTT 1283 Query 1337 CTACATGGTCGCAAACGCTCTCATCTT-CAGACGTTACGTCCCGGTTGGACCCACCAAGC 1395 ||||||||||||||||||| | || || | | || || || |||| ||| |||||||| Sbjct 1284 CTACATGGTCGCAAACGCTGTTATATTTC-GCCGCTATGTAGCGGTCGGATACACCAAGC 1342 Query 1396 CGTGGCCCACACTCTGCTTCCTCA-CACTATTCTCCATAACCTCTCTCGTCTTCACCCTC 1454 | ||||| ||||||| ||||||| | ||||||||||||||||| | |||||||| | Sbjct 1343 CATGGCCAACACTCTCCTTCCTCTGC-CTATTCTCCATAACCTCAATTTTCTTCACCTT- 1400 Query 1455 A-TCTGGAAACTTGTGCCG-GAAGGTA-AGCCTAAA-GCTTTCATGCTCGGTGCCAGTGC 1510 | ||||| |||||| ||| || || | |||||| | || ||| ||||| ||||| || Sbjct 1401 AGTCTGGCAACTTGCACCGCGA-GGCCCA-CCTAAATGGTT-CATACTCGGAGCCAGCGC 1457 Query 1511 GGTGGTGGCTATAGCCATCGTGCTGAGCTTTCAGTGCGTGGTTCCCCAGGCTAGGAAACC 1570 ||| ||||||||||||||| | || || || || || || || || ||||||| || Sbjct 1458 GGTCACGGCTATAGCCATCGTTCAGATATTCCATTGTGTAGTACCTCAAGCTAGGATCCC 1517 Query 1571 TGAGTTGTGGGGAGTCCCGTTCATGCCGTGGACCCCGTGCGTGTCGATATTCTTGAACAt 1630 |||||| ||||| || ||||| ||||||||||| || ||||| || ||||| |||||||| Sbjct 1518 TGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCGTTTCAATATTTTTGAACAT 1577 Query 1631 ttttttGCTTGGTTCGTTGGACGCACCCTCTTACGTCCGGTTTGGATTCTTCTCCGGTTT 1690 ||| |||||||| || ||||| || || || || || | || || |||||||| || || Sbjct 1578 TTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGATTCGGGTTCTTCTCGGGATT 1637 Query 1691 GATC-GTGCTCGTGTATTTGTTTTATGGCGTTCATGCGAGTTCTGATGCTGAAGCGA-AT 1748 | | || ||| | ||| |||||||| | ||||||||||| | ||||||||||| || | Sbjct 1638 -AGCAGTTCTCATATATGTGTTTTATAGTGTTCATGCGAGCTATGATGCTGAAG-GAGAC 1695 Query 1749 GGATCTTTTGGTGTGAAAGATG--GACAAGTCATGAAAGA 1786 || ||| ||| | | ||||||| || ||| | ||||||| Sbjct 1696 GGGTCTCTTGATTTCAAAGATGTTGA-AAGCCTTGAAAGA 1734 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72028653295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5