BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04830.1 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg487267 jgi|Araly1|487267|fgenesh2_kg.6__401__AT5G04830.2 972 0.0 > Ahg487267 jgi|Araly1|487267|fgenesh2_kg.6__401__AT5G04830.2 Length=921 Score = 972 bits (526), Expect = 0.0 Identities = 652/710 (92%), Gaps = 20/710 (3%) Strand=Plus/Plus Query 170 CAGCGATGGATCCAG-CGCGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAA- 227 ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 164 CAGCGATGGATCC-GTCACGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAAT 222 Query 228 CAAGCGATTTGCTGATAAAATCATGCCTCATCTTCTCAACTTGTACGGGTCTAGTGCAAA 287 | |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 223 C-AGCGATTTGCTGATAATATCATGCCTCATCTTCTCAACTTGTACGGGTCTTGTGCAAA 281 Query 288 AGCCAACGATTTTGACATGTATGCACCAAATGCTTCATTTGAAGACCCTTTGACGCATGC 347 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 282 AGCCAACGACTTTGACATGTATGCACCAAATGCCTCGTTTGAAGACCCTTTGACGCATGC 341 Query 348 TCAGGGAGTGAAGCAGATCAAATCAGCATTTTATTCACTCCCTAAGGTGTTTGGTGAGTC 407 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 342 TCAGGGAGTGAAGCAAATCAAATCAGCATTTTATTCACTCGCTAAGGTGTTTGGTGAGTC 401 Query 408 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAACCTCGCCGGGGAAGAAAGAGATACT 467 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 402 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAATCTCGCCTGGGAAGAAAGAGATACT 461 Query 468 AATTGACAACAAACAACACTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 527 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 462 AATTGACAACAAACAACATTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 521 Query 528 TAAGCTCTATGTCGAGGACGGGAAGATCGTTCGACATGAAGACTGGTGGGACAAGAAACC 587 || |||||||||||| |||||||||| || || || ||||||||||||||||||||||| Sbjct 522 CAAACTCTATGTCGAGAACGGGAAGATTGTCCGTCACGAAGACTGGTGGGACAAGAAACC 581 Query 588 TCTGAGGAACAGAGACACGGTTAGCTTTCCATTAGTCGGACGGGTAATGGAGATGGGTCG 647 ||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct 582 TCTGAGGAACAGAGACACGGTTAGCTTCCCGTTGGTCGGGCGGGTAATGGAGATGGGTCG 641 Query 648 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCCCA 707 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 642 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCACA 701 Query 708 ATGAACAAATGGAAA-AT--A-CAAAACACACATCATGTTATAGTGT-TCAG-TTTCTTC 761 |||| |||| ||||| | | |||||||||| ||| || ||||| | || ||||| | Sbjct 702 ATGAGCAAA-GGAAATACGCAACAAAACACACCGCATATTCTAGTGCCT-AGATTTCT-C 758 Query 762 AAAACACTACTTGAATTTAAGAAACTCCTTTAATC-GATTTGGTTTCGAATTTAGTTTAA 820 |||||| ||||||||||| || |||||||| |||| | |||||||||||||||||||||| Sbjct 759 AAAACAGTACTTGAATTTGAGGAACTCCTTAAATCCG-TTTGGTTTCGAATTTAGTTTAA 817 Query 821 AAATATGTAATACAGTATGTTAATCGTCTGTTGGTTTTTAGTCTGGTACG 870 |||| ||||||| | ||||||| || ||||| ||||||||||||||| Sbjct 818 AAATCTGTAATA---T--GTTAATCTTCAGTTGGATTTTAGTCTGGTACG 862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5