BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04900.1 Length=1235 Score E Sequences producing significant alignments: (Bits) Value Ahg487276 jgi|Araly1|487276|fgenesh2_kg.6__410__AT5G04900.1 1838 0.0 > Ahg487276 jgi|Araly1|487276|fgenesh2_kg.6__410__AT5G04900.1 Length=1158 Score = 1838 bits (995), Expect = 0.0 Identities = 1092/1138 (96%), Gaps = 10/1138 (1%) Strand=Plus/Plus Query 47 TCTGTAATGGCTACTTGGAGTGGTTTCAACGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 106 |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 TCTGTAATGGCTACTTCGAGTGGTTTCAGTGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 60 Query 107 TCTTCCTCCGTCTCAAATGTCACT-AAGCTTCCGTTTCTCTCTCCTATTTGCCGGCGTCG 165 |||||||||||| ||||||||||| || ||||| |||||||||||| ||||||||||||| Sbjct 61 TCTTCCTCCGTCACAAATGTCACTCAA-CTTCCATTTCTCTCTCCTCTTTGCCGGCGTCG 119 Query 166 GTTACTGGCAGAACGCTTTGGTCTCGCAACTGTCGTTGTTACGCGCCAAAACCTCACGGT 225 |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| Sbjct 120 GTTACTGGAAGAACGCTTCGGTCTCGCAACTATCGTTGTTACGCGCCAAAACCTCTCGGT 179 Query 226 TACTCCGTCGTCTGCGGCGGTGGAAGCTCGTATCTCAGGGAAAAGAGAACCTATGACGCC 285 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 180 TACTCCGCCGTCTGCGGCGGTGGAAGCTCGTATCCCAGGGAAAAGAGAACCTATGACGCC 239 Query 286 TCCGTATAACATATTGATCACTGGCTCAACCAAAGG--T-ATAGGATATGCATTAGCTAG 342 |||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 240 TCCGTATAACGTCTTGATCACTGGCTCAACCAAAGGTTTCATAGGATATGCATTAGCTAG 299 Query 343 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 359 Query 403 GACTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 462 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTCTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 419 Query 463 TGTTACGGAAGGGAAGGATGTGAGGGAACTTGTAGCTTATAGTCAGAAGAATCTTAAATA 522 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 TGTTAGGGAAGGGAAGGATGTGAGGGAACTCGTAGCTTATAGTCAGAAGAATCTTAAATA 479 Query 523 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATATAGCTTTAAACCTTTGGCAGA 582 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATACAGCTTTAAACCTTTGGCAGA 539 Query 583 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATG 642 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTTGGTCTCATGTTATG 599 Query 643 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 659 Query 703 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 719 Query 763 ACGGAGTGTCGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 822 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ACGGAGTGTTGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 779 Query 823 AAATGTCGTGGTGCATAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 882 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AAATGTCGTGGTGCACAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 839 Query 883 AGCAACTACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCCGAAGTGGT 942 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 840 AGCAACAACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCTGAAGTGGT 899 Query 943 GGCTGAGTACCTTGTCCCAAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 1002 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AGCTGAGTACCTTGTCCCGAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 959 Query 1003 TTACATCCGTTTCCTAACTGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCGTT 1062 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 960 TTACATTCGTTTCCTAACCGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCATT 1019 Query 1063 GGGAGCAAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTC---AAACTAAGTATTAGA 1119 |||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 1020 GGGAGCGAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTCGTCAAAATAAGGATTAGA 1079 Query 1120 ATTGTATT-GCTTTCTCAGTTTGTTCAATGGTAAATAAAAACCTCTACATTTTGTTCA 1176 |||||||| | |||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 1080 ATTGTATTTG-TTTCAGTGTTTGTTCAATGGTTAATAAAAACCTCTACATCTTGTTCA 1136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46128729570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5