BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04940.1
Length=2824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487281 jgi|Araly1|487281|fgenesh2_kg.6__415__AT5G04940.2 3097 0.0
> Ahg487281 jgi|Araly1|487281|fgenesh2_kg.6__415__AT5G04940.2
Length=2608
Score = 3097 bits (1677), Expect = 0.0
Identities = 1947/2073 (94%), Gaps = 36/2073 (2%)
Strand=Plus/Plus
Query 363 ATGGAAAGAAATGGTGGTCACTACACTGATAAGACGAGAGTGTTGGATATTAAACCATTG 422
|||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 284 ATGGAAGGGAATGGTGGTAACTACACTGATAAGACGAGAGTGTTGGATATTAAGCCATTG 343
Query 423 CGTACTCTAAGACCTGTGTTTCCCAGTGGAAATCAAGCTCCGCCTTTTGTGTGTGCTCCT 482
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 344 CGTACTCTAAGACCCGTGTTTCCCAGTGGAAATCAAGCTCCGCCTTTTGTCTGTGCACCT 403
Query 483 CCTTTTGGACCATTTCCTCCTGGGTTCTCATCGTTTTATCCGTTTAGTTCGTCTCAAGCG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CCTTTTGGACCATTTCCTCCTGGGTTCTCATCGTTTTATCCGTTTAGTTCGTCTCAAGCG 463
Query 543 AATCAGCACACACCAGATCTTAACCAAGCTCAGTATCCACCGCAACATCAGCAGCCTCAG 602
| | || ||| | | | ||| || || | | | |||| || |||||
Sbjct 464 AGT---CA-ACA-C--A-C---ACC-AGATC--T-T--------A-ATCA--AG-CTCAG 496
Query 603 AATCCACCACCGGTATATCAGCAGCAGCCTCCTCAGCATGCATCTGAGCCTTCGTTGGTT 662
||||| || | | | || |||||| || ||| |||||||||||||||| ||||||
Sbjct 497 TATCCA-CA---GCA-A-CATCAGCAG---CCGCAGAATGCATCTGAGCCTTCTTTGGTT 547
Query 663 ACTCCTTTAAGGTCATTTAGATCTCCTGATGTGTCTAATGGCAACGCGGAACTTGAGGGG 722
|||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||
Sbjct 548 ACTCCTTTAAGGTCTTTTAGATCTCCTGATGCGTCTAATGGCAACACGGAGCTTGAGGGG 607
Query 723 TCAACTGTGAAAAGAAGGATCCCTAAAAAGCGTCCCATTTCTCGGCCTGAGAATATGAAT 782
|||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 608 TCAACTGTGAAAAGAAAGATCCCTAAAAGGCGTCCTATTGCTCGGCCTGAGAATATGAAT 667
Query 783 TTCGAGAGTGGGATTAATGTGGCTGATAGAGAGAATGGCAATAGGGAGTTGGTGTTGAGT 842
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 668 TTCGAGAGTGGGATTAACGTGGCTGAAAGAGAGAATGGCAATAGGGAGTTGGTGGTGAGT 727
Query 843 GTTCTTATGCGGTTTGATGCGTTAAGAAGAAGGTTTGCACAACTTGAGGATGCTAAGGAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 728 GTTCTTATGCGGTTTGATGCGTTAAGAAGAAGGTTTGCACAACTTGAGGATGCAAAGGAA 787
Query 903 GCAGTTAGTGGGATTATCAAACGCCCTGATTTGAAATCAGGATCTACTTGTATGGGCAGA 962
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 788 GCAGTTAGTGGGATTATCAAACGCCCTGATTTGAAAGCAGGATCTACTTGTATGGGCAGA 847
Query 963 GGGGTGCGGACAAACACCaaaaaaaGACCTGGTATTGTTCCTGGTGTTGAGATTGGGGAC 1022
||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 848 GGGGTCCGGACAAACACCAAAAAAAGACCTGGTATTGTTGCTGGCGTTGAGATCGGGGAC 907
Query 1023 GTATTCTTCTTCAGGTTTGAGATGTGTTTGGTGGGGTTGCATTCTCCATCAATGGCTGGG 1082
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 908 GTATTCTTCTTCAGGTTTGAGATGTGTTTGGTGGGTTTGCATTCTCCATCAATGGCCGGG 967
Query 1083 ATTGACTATCTGGTTGTCAAGGGAGAAACGGAAGAAGAACCTATCGCCACTAGCATTGTC 1142
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 968 ATTGACTATTTGGTTGTCAAGGGAGAAACGGAGGAAGAACCTATCGCCACTAGCATTGTG 1027
Query 1143 TCATCTGGATATTATGATAATGACGAAGGTAATCCTGATGTTTTGATTTATACTGGTCAG 1202
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1028 TCATCTGGATATTATGATAATGACGAAGGTAATCCCGATGTTTTGATTTATACTGGTCAG 1087
Query 1203 GGTGGTAATGCTGATAAAGATAAGCAATCTTCTGACCAAAAGCTCGAAAGGGGTAATCTT 1262
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1088 GGTGGTAATGCTGATAAAGATAAGCAATCATCCGACCAAAAGCTCGAAAGGGGTAATCTT 1147
Query 1263 GCCTTGGAGAAGAGCTTGCGTAGAGATAGTGCAGTTAGGGTAATAAGGGGCTTGAAAGAG 1322
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1148 GCCTTGGAGAAGAGCTTGCGTAGAAATAGTGCAGTTAGGGTAATAAGAGGCTTGAAAGAG 1207
Query 1323 GCTTCTCATAATGCTAAGATCTATATTTATGATGGACTCTATGAGATTAAAGAGTCATGG 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GCTTCTCATAATGCTAAGATCTATATTTATGATGGACTCTATGAGATTAAAGAGTCATGG 1267
Query 1383 GTAGAGAAAGGAAAATCTGGACACAACACCTTCAAGTATAAACTAGTTAGAGCTCCTGGT 1442
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1268 GTAGAGAAAGGAAAGTCGGGACACAACACCTTCAAGTATAAACTGGTTAGAGCTCCTGGT 1327
Query 1443 CAACCGCCTGCATTTGCTTCATGGACTGCAATCCAGAAATGGAAGACGGGTGTGCCTTCA 1502
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1328 CAACCTCCTGCATTTGCTACATGGACTGCAATCCAGAAATGGAAGACGGGTTTGCCTTCA 1387
Query 1503 AGGCAAGGACTCATTCTTCCCGATATGACTTCCGGGGTTGAAAGCATACCTGTTTCACTT 1562
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1388 AGGCAAGGACTTATTCTCCCCGATATGACTTCTGGGGTTGAAAGTATACCTGTTTCACTT 1447
Query 1563 GTTAACGAAGTTGATACCGACAATGGGCCTGCTTATTTCACCTACTCCACAACTGTGAAA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1448 GTTAACGAAGTTGATACCGACAATGGGCCTGCTTATTTCACCTACTCCACAACGGTTAAA 1507
Query 1623 TACTCAGAGTCGTTTAAGCTGATGCAGCCTTCTTTTGGATGTGATTGTGCCAACTTATGC 1682
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1508 TACTCAGAGTCGTTTAAGCTGACACAGCCTTCTTTTGGATGTGATTGTGCCAACTCATGC 1567
Query 1683 AAACCAGGGAACTTGGATTGTCACTGCATAAGGAAAAATGGAGGTGACTTCCCCTACACC 1742
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1568 AAACCAGGGAACTTGGACTGTCACTGCATAAGGAAAAATGGAGGTGATTTCCCCTACACC 1627
Query 1743 GGTAATGGAATTCTAGTTAGCCGAAAGCCTATGATATATGAATGCAGTCCATCTTGCCCG 1802
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1628 GGTAATGGAGTTCTAGTTAGCCGCAAGCCTATGATATATGAATGCAGTCCATCTTGCCCG 1687
Query 1803 TGCTCGACTTGCAAAAACAAGGTGACTCAAATGGGAGTAAAAGTGAGGCTGGAAGTTTTC 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 TGCTCGACTTGCAAAAACAAGGTGACTCAAATGGGAGTAAAAGTGAGGCTGGAAGTTTTC 1747
Query 1863 AAGACAGCGAATAGAGGATGGGGATTGCGGTCATGGGATGCTATTCGTGCTGGTTCTTTT 1922
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1748 AAGACAGCGAATAGAGGATGGGGCTTGCGCTCATGGGATGCTATTCGTGCTGGTTCGTTT 1807
Query 1923 ATATGTATCTATGTAGGTGAGGCCAAAGACAAATCAAAGGTGCAGCAAACTATGGCTAAT 1982
||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1808 ATATGCATATATGCAGGTGAGGCCAAAGACAAATCGAAGGTGCAGCAAACTATGGCTGAT 1867
Query 1983 GATGATTATACTTTTGATACAACCAATGTGTATAACCCTTTCAAGTGGAACTACGAACCT 2042
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||
Sbjct 1868 GATGATTATACTTTTGATACAACCCATGTCTATAACCCTTTCAAGTGGAACTATGAGCCT 1927
Query 2043 GGCTTAGCAGACGAAGATGCTTGTGAAGAGATGTCTGAAGAATCTGAAATCCCGCTGCCA 2102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1928 GGCTTAGCAGACGAAGATGCTTCTGAAGAGATGTCTGAAGAATCTGAAATCCCGCTGCCA 1987
Query 2103 CTGATAATCAGTGCTAAGAATGTTGGGAACGTTGCCCGATTCATGAATCATAGTTGCTCA 2162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1988 CTGATAATCAGTGCTAAGAATGTTGGGAACGTTGCCCGATTCATGAATCATAGTTGCTCG 2047
Query 2163 CCTAATGTTTTCTGGCAGCCGGTTAGTTATGAAAATAACAGTCAACTCTTTGTGCATGTG 2222
||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 2048 CCTAATGTTTTCTGGCAGCCGGTCACTTATGAAAATAACAGTCAACTCTTCGTGCATGTC 2107
Query 2223 GCCTTCTTTGCCATTTCTCACATCCCTCCAATGACTGAGTTAACTTACGACTATGGAGTA 2282
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108 GCCTTCTTTGCCATTGCTCACATCCCTCCAATGACTGAGTTAACTTACGACTATGGAGTA 2167
Query 2283 TCTAGACCAAGTGGGACTCAAAATGGCAATCCTTTATATGGCAAAAGGAAATGCTTCTGT 2342
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2168 TCTAGACCAAGTGGGACTGAAAATGGCAATCCTTTATATGGCAAAAAGAAATGCTTTTGT 2227
Query 2343 GGATCAGCGTATTGCCGTGGCTCATTTGGATGATGATGGAGAGAAAGGCGATCTCTGGTG 2402
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||
Sbjct 2228 GGATCAGCGTATTGCCGTGGCTCATTTGGATGATGATGGGGAGAAAAGTGATCTCTGCTG 2287
Query 2403 AACAACTGGAGTCGGATGATTTTGGTTGCAAAA 2435
||||||||||||| || ||||||||| ||||||
Sbjct 2288 AACAACTGGAGTCTGACGATTTTGGTAGCAAAA 2320
Score = 383 bits (207), Expect = 4e-105
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 2517 GGCAGCTGGAGTGTTGAGTCCTGATAGGTGGAACCGAGTACTTTTGGTAGCAAGTAAAGT 2576
||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 2321 GGCAGGTGGAGTGTTGAGTCCTGATCTGTGGAATCGAGTACTTTTGGTAGCAACTAAAGT 2380
Query 2577 AAGTCTCTTTGATCTTCTCTTCAAGAGCATAAGACGCAAAGCTGTGAAGGATTTTTATAC 2636
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2381 AAGTCTCTTTGATCTTCTCTTCAACAGCATAAGACGCAAAGCTGTGAAGGATTTTTA--C 2438
Query 2637 TGCTTCTCCAGCAAAAACCTTATCTATTTATCGGATTGTGGAAGATGTCCTCATGCTTTT 2696
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 2439 TGCTTCTCCAGCAGAAACCTTATCTATTTCTCGGATTGTGGAAGATGTCCTCATGTTTTT 2498
Query 2697 ATCCTGTTGGATATGTAATCTTATTAGTCAGTATTCAGATCGATTTTTAGGACAAATCTC 2756
|||| |||||||||||||| ||||||||||| ||| ||||| |||| ||||||||||||
Sbjct 2499 CTCCTTTTGGATATGTAATCATATTAGTCAGTGTTCGGATCGGTTTT-AGGACAAATCTC 2557
Query 2757 TGGAAACTCTAAGCCTCTTTTGATTA 2782
||||||||||| ||||||||||||||
Sbjct 2558 TGGAAACTCTA-GCCTCTTTTGATTA 2582
Score = 348 bits (188), Expect = 2e-94
Identities = 261/292 (89%), Gaps = 21/292 (7%)
Strand=Plus/Plus
Query 27 TTTGTTTCCctctctttctctctgtctctctctTTTCGGAAACCCT-ATTTCGCGAGCAA 85
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1 TTTGTTTCCCTCTCTTTCTCTGTGTCTCTCTCTTTTCGGAAACCCTAATTTCGCGAGC-- 58
Query 86 GCAGCTTGAAAAGGGTGTGTGAATGTGATCTATCCAAAAGCGTATTTTCAGGTTTCTTCT 145
|||||||||||||||||||| ||||||||||||||||||| ||||||||| || | |
Sbjct 59 -CAGCTTGAAAAGGGTGTGTG-GTGTGATCTATCCAAAAGCGCATTTTCAGG-TT-TAAT 114
Query 146 TTCTGAAAGTTTTAAGCTTTTTGCTTTGTT-ATTGTAATCTCTGAATCTG-GAATGATGG 203
|| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 115 TTGTGAAAGTTTTAAGCTTTTTGCTTTGTTTATTGTAATCTCTGAATCTGCGA-TGATGG 173
Query 204 TTGTTTCTCTGTGCATGCAATTGGCCTTTTGAGGATCTCTGATTCGTAGTTGTGTTTA-- 261
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 174 TTGTTTCTCTGTGCATGCAATTGGCTTTTTGAGGATCTCTGATTCGTTGTTGGGTTTATT 233
Query 262 -G--AA-AAG--GT-GG-ACTTTTTACTTTACCCAGATCTTTGATAGCTTAA 305
| || || || || |||||||||||| |||||||||||||||||||||
Sbjct 234 TGTGAAGAAAAAGTTGGGACTTTTTACTTT-CCCAGATCTTTGATAGCTTAA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106576505510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5