BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04980.2
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892416 jgi|Araly1|892416|Al_scaffold_0006_412 2263 0.0
Ahg484108 jgi|Araly1|484108|fgenesh2_kg.5__100__AT2G01900.1 67.6 2e-10
> Ahg892416 jgi|Araly1|892416|Al_scaffold_0006_412
Length=1410
Score = 2263 bits (1225), Expect = 0.0
Identities = 1351/1411 (96%), Gaps = 11/1411 (1%)
Strand=Plus/Plus
Query 89 ATGTCGGATCCACTCTATATATTTAATAGGTCTCAATCCGAGATAGTAGTTGAATCTCTT 148
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCGGATCCACTCTATATATTTAATAGGTCTCAATCCGAGATAGTAATTGAATCTCTT 60
Query 149 TTAGCTTCAAGCAATCTCAGATCTTCAATGCCTACTCAGCAAATCCAATCCTTAAGAGTC 208
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTAGCTTCAAGCAATCTCAGATCTTCAATGCCCACTCAGCAAATCCAATCCTTAAGAGTC 120
Query 209 TTTGTGGCGACATGGAACGTGGGAGGAAAATCTCCACACTCTGGTCTTAATCTTGATGCT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TTTGTGGCGACATGGAACGTGGGAGGAAAATCTCCACACTCTGGTCTTAATCTCGATGCT 180
Query 269 TTGCTTCACGTGCATAGTGAAT-TCGATGTATACGTTTTAGGTTTTCAGGAGATTGTTCC 327
||||||||||| || || |||| | ||| |||||||||||||||||||||||||||||||
Sbjct 181 TTGCTTCACGTCCACAGCGAATAT-GATATATACGTTTTAGGTTTTCAGGAGATTGTTCC 239
Query 328 ATTGAATGCTGGAAATGTCCTTGTTCTTGGAGACAACGAGCCTGCTGCGAAATGGTTAGC 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTGAATGCTGGAAATGTCCTTGTTCTTGGAGACAACGAGCCTGCTGCGAAATGGTTAGC 299
Query 388 GATGATCAATCAATCCTTAAACAA---ATCATCA---TCATCTTCTGGAGGAAGACTTAG 441
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
Sbjct 300 TATGATCAATCAATCCTTGAACAAGTCATCATCAACATCATCTTCTGGAGGAAGACTTGG 359
Query 442 CCCAAAAACTCCATCTTTTGGCGCTGGATCGATGTTCTTTGCGAAACCTTCTTTGAAGAA 501
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 360 TCCAAAAACTCCATCTTTTGGCGCTGGATCTATGTTCTTTGCAAAACCTTCTTTGAAGAA 419
Query 502 GATTAGTGAGAGTTTCAGAACAGAGTGCAGGAGAAAGCTGAAGATCTGTAACTGCAGCAC 561
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 GATCAGTGAGAGTTTCAGAACAGAATGCAGGAGAAAGCTGAAGATCTGTAACTGCAGCAC 479
Query 562 TTTCTCTGAAGATATTGTAAGAAAGTATGGGAGAGAATCTTGTTTCAGATGTCCTGAAGG 621
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TTTCTCTGAAGAGATTGTAAAAAAGTATGGGAGAGAATCTTGTTTCAGATGTCCAGAAGG 539
Query 622 TCTAGTTAACCAATCCGGTGTACTTTCtgatgacgaagaagatgaagatgatga---cga 678
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 540 TCTAGTTAACCAATCCGGTGTACTTTCTGATGACGAAGAAGACGAAGATGATGATGACGA 599
Query 679 tgatgatgaagacgaggatgaaggaggaggaaAAGTTGCTTCTCTTGTAAGCAACCAAAT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGATGATGAAGACGAGGATGAAGGAGGAGGAAAAGTTGCTTCTCTTGTAAGCAACCAAAT 659
Query 739 GACGATGAAGTATGGCTTAGTAGCATCAAAGCAAATGGTGGGTATATTCCTTACTGTGTG 798
|| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 660 GATGATGAAGTATGGCTTAGTAGCATCAAAGCAAATGGTGGGAATATTCCTCACTGTGTG 719
Query 799 GATGAGAAAGGAACTTATTCAACACGTTTCTCATCTCAGAATCTCCTCCGTCACCCGCGG 858
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 GATGAGAAAGGAACTTATTCAACACGTTTCTCATCTCAGAATCTCCAGCGTCACCCGCGG 779
Query 859 AATCATGGGTTGCTTAGGAAACAAGGGATGCATAGCTGTGAGTTTGCAGCTCTACAAGAC 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATCATGGGTTGCTTAGGAAACAAGGGATGCATAGCTGTGAGTTTGCAGCTCTACAAGAC 839
Query 919 GAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGAGAGAAGGAGACGAACGCCG 978
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 TAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTGAGAGAGAAGGAGACGAACGTCG 899
Query 979 CAGAAACTTAGATGTGATCGAGATTCTCAAGAACACAAGTTTCCCTAGAATATGCAGAAC 1038
|||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 900 CAGAAACTCAGATGTGATCGAGATTCTCAAGAACACAACTTTCCCTAGAATCTGCAGAAC 959
Query 1039 CTCTTTTACTCGTGTCCCTGATCGAATCACAAAGCACGATCGGGTCATATGGCTTGGAGA 1098
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 960 TTCTTTTACTCGTGTCCCTGATCGAATCACTAAGCATGATCGGGTCATATGGCTCGGAGA 1019
Query 1099 TTTGAACTACAGAATAGCTTTGAGTTACTCAGAAACAAAGACCCTCTTGGATAAAAACGC 1158
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 TTTGAACTACAGAATAGCTTTGAGTTACTCAGAAACAAAGACGCTCTTGGATAAAAACGC 1079
Query 1159 TTGGGACACTCTTCTCAACAAAGATCAGCTCAAGATTGAAAGAGACGCAGGTCGAGTGTT 1218
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGGGACACTCTTCTTAACAAAGATCAGCTCAAGATTGAAAGAGACGCAGGTCGAGTGTT 1139
Query 1219 CAAAGGATGGCATGAAGGAAAAATCTTCTTTGCACCAACTTATAAGTACTCTTATAACTC 1278
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1140 CAAAGGATGGCACGAAGGCAAAATCTTCTTCGCACCAACTTATAAGTATTCTTATAACTC 1199
Query 1279 TGATGCTTACGCGGGAGACACTAGCAAAGAAAAGAAGAACAAGAGAAGAACTCCGGCCTG 1338
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1200 TGATGCTTACGCCGGAGACACTACCAAAGAAAAGAAGAACAAGAGAAGAACTCCTGCTTG 1259
Query 1339 GTGCGATAGGATTCTTTGGCACGGTGATGGAATCCGGCAGCTCTCGTACGTGCGCGGCGA 1398
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 GTGCGATAGGATTCTTTGGCACGGGGATGGAATCCGGCAGCTCTCGTACGTGCGCGGCGA 1319
Query 1399 GTCACGTTTCTCCGATCATCGGCCGGTTTGCTCCGTGTTTGTCGTCGACGTTGAGGTTTG 1458
|||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 GTCACGATTCTCTGATCACCGGCCGGTTTGCTCCGTATTTGTCGTCGACGTTGAGGTTTG 1379
Query 1459 CGAGGGTAAAACCGGAACTAGGAGACAATAA 1489
||||||||||||||||||||| |||||||||
Sbjct 1380 CGAGGGTAAAACCGGAACTAGAAGACAATAA 1410
> Ahg484108 jgi|Araly1|484108|fgenesh2_kg.5__100__AT2G01900.1
Length=1500
Score = 67.6 bits (36), Expect = 2e-10
Identities = 84/106 (79%), Gaps = 8/106 (8%)
Strand=Plus/Plus
Query 855 GCGGAATCATGGGTTGCTTAGGAAACAAGGGAT-GCATAGCTGTGAG-TTTGCAGCT-CT 911
|||| |||||||||||||||||||||||||||| | || | || || ||| || | |
Sbjct 749 GCGGCATCATGGGTTGCTTAGGAAACAAGGGATCGG-TATCGGTTAGATTT-CAATTGC- 805
Query 912 AC-AAGACGAGCTTCTGCTTCATCTGCAGTCATCTAGCTTCTGGTG 956
|| || |||| |||||| ||| | ||||| || |||||||| ||||
Sbjct 806 ACGAA-ACGACCTTCTGTTTCGTTTGCAGCCACCTAGCTTCCGGTG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5