BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05000.2 Length=1142 Score E Sequences producing significant alignments: (Bits) Value Ahg487289 jgi|Araly1|487289|fgenesh2_kg.6__423__AT5G05000.1 1561 0.0 > Ahg487289 jgi|Araly1|487289|fgenesh2_kg.6__423__AT5G05000.1 Length=1161 Score = 1561 bits (845), Expect = 0.0 Identities = 963/1020 (94%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 36 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCTTCGTGAATGGATCGGTATCCAGCA 95 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 120 GTAAGGATTTGTGTCCATGGCAGCTTTGCAAACGCCTCGTGAATGGATCGGTATCCAGCA 179 Query 96 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTATAAAGAAGAGGA 155 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 180 GTTCCCACCTGCTACTCAATCTAAATTGCTCGAGATCCTTGGGAAGTTTAAAGAAGAGGA 239 Query 156 TGTGAGCTCGCTAACGGTCCTTGTAATGGGGAAAGGTGGTGTTGGAAAGTCATCAACTGT 215 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 240 TGTGAGCTCGCTAACGGTCCTTGTAATGGGCAAAGGCGGTGTTGGAAAGTCATCAACTGT 299 Query 216 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GAATTCAGTTATAGGCGAGAAAGCTGCTGCAGTTAGTACTTTCCAGTCTGAAGGACTGAG 359 Query 276 GCCTACCTTGGTCTCTCGCACAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 335 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 360 GCCTACCTTGGTCTCCCGCTCAAGATCGGGATTTACATTGAATATCATCGACACTCCTGG 419 Query 336 TCTTATTGAGGGAGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTTCTCCT 395 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 420 TCTTATTGAGGGGGGATATGTGAATGATCAAGCCATCAACATTATAAAACGATTCCTCCT 479 Query 396 CAACATGACTATAGATGTGCTACTATACGTAGACCGTTTGGATGTGTACCGGGTGGATGA 455 ||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| Sbjct 480 CAACATGACTATAGATGTGCTACTATATGTAGACCGTTTGGATGTATATAGGGTGGATGA 539 Query 456 CCTTGATAGGCAAGTTGTCGGTGCTATAACTGATGCATTTGGTAAAGAGATATGGAAGAA 515 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| || Sbjct 540 CCTTGATAGGCAAGTTGTCAGTGCTATAACCGATGCATTTGGAAAAGAGATATGGAAAAA 599 Query 516 GTCTGCTCTTGTTCTCACCCATGCTCAGTTCTCTCCACCAGACGGGTTAAATTATAACCA 575 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | Sbjct 600 GTCTGCTCTTGTTCTCACACATGCTCAGTTCTCTCCGCCAGACGGGTTAAATTATAATCG 659 Query 576 CTTTGTCTCCAAAAGATCTAATGCTCTTCTAAAAGTTATCCAG-ACAGGCGCTCAACTGA 634 ||||||||||| ||||||| ||||||||||||||||||||| | |||||||| ||||||| Sbjct 660 CTTTGTCTCCAGAAGATCTGATGCTCTTCTAAAAGTTATCC-GTACAGGCGCCCAACTGA 718 Query 635 AGAAACAGGATTTGCAGGGTTTTTCTATTCCTGTCATTCTTGTTGAGAACAGCGGAAGAT 694 ||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct 719 AGAAACAGGATTTGCAGGGTTCATCTACACCCATCATTCTTGTTGAGAACAGCGGAAGAT 778 Query 695 GCCATAAGAACGA-AAGCGATGAAAAGATTCTTCCATG-CGGGACTAGTTGGATTCCCAA 752 | ||||| || || || ||||||||||||||||||| | ||||||||| ||||||||||| Sbjct 779 GTCATAAAAATGACAA-CGATGAAAAGATTCTTCCA-GACGGGACTAGCTGGATTCCCAA 836 Query 753 TCTGTTCAACAAAATCACAGAGATCTCTTTTAATGGCAACAAGGCGATTCATGTTGACAA 812 ||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 837 TCTACTCAACACAATCACAGAGATCTCTTTTAACGGCAACAAGGCGATTCACGTTGACAA 896 Query 813 GAAACTGGTCGAAGGGCCAAACCCAAA-CGAAAGAGGaaaaaaaCTGATTCCTTTAATGT 871 ||||||||| ||||||||||||||||| | |||||||||| | |||||||||||| || | Sbjct 897 GAAACTGGTGGAAGGGCCAAACCCAAATC-AAAGAGGAAAGAGACTGATTCCTTTGATCT 955 Query 872 TTGCATTCCAATACTTGCTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTT 931 |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 956 TTGCATTCCAGTACTTGTTGGTGATGAAGCCATTGGTTCGAGCAATCAAGTCCGATGTTA 1015 Query 932 CGAGAGAGAGTAAACCGGCGTGGGAGCTGCGAGACTCCGGTTTAGCAAGTCGAAGGTCTT 991 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1016 CTAGAGAGAGTAAACCGGCGTGGGAGCTGCGGGACTCCGGTTTAGCAAGTCGAAGGTCTT 1075 Query 992 GAGTTGTGGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1051 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 GAGTTGTTGACACGAGTTTTGTTTGGTTTGTTTGTCTATCTGAGAGATTGTTCTGTAGTT 1135 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42583298289 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5