BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05140.1 Length=2121 Score E Sequences producing significant alignments: (Bits) Value Ahg487303 jgi|Araly1|487303|fgenesh2_kg.6__437__AT5G05140.1 2634 0.0 Ahg915740 jgi|Araly1|915740|Al_scaffold_0008_491 551 8e-156 Ahg940650 jgi|Araly1|940650|scaffold_601194.1 316 3e-85 > Ahg487303 jgi|Araly1|487303|fgenesh2_kg.6__437__AT5G05140.1 Length=1989 Score = 2634 bits (1426), Expect = 0.0 Identities = 1592/1670 (95%), Gaps = 19/1670 (1%) Strand=Plus/Plus Query 438 ACGATGAAAGCATCGGGTTCATTAGATAGCTGGAGAGAATATTTCCGACGGCGAGGAGAT 497 |||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||| Sbjct 329 ACGATGAAAGCATCAGGTTCGTTAGATAGCTGGAGAGAATATTT-C--CGGCGAGGAGAT 385 Query 498 TCCGATATATTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 557 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 TCCGATATTTTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 445 Query 558 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGT 617 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 446 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGCAGAGTGAGCCGC 505 Query 618 TGCGTCGGATGCGACCATCTTGAATTGTCTGTTCCCGGAGACGACGAGGCTAA------C 671 ||| |||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct 506 TGCATCGGATGCGACCATCTCGAATTGTCTGTTCCCGGAGACGACGAGGGTAATCGCGGC 565 Query 672 CGTGGAACCACCGGAAATGGTGGTGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCT 731 |||||| ||||||| | || |||||||||||||||||||||||||||||||||| | | Sbjct 566 CGTGGAGCCACCGGTGACGGCGGTGGTGGTACGGCGGTTGATGAAGATTATGAGG-T--T 622 Query 732 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGGGATAATAATCAGATTGTTAGC 791 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 623 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGAGATAGTAATCAGATTGTTAGC 682 Query 792 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 683 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 742 Query 852 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 802 Query 912 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 862 Query 972 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTCAGGAAACATTCTTCTGATAAGATTCGA 1031 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 863 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTGAGGAAACATGGTTCTGATAAGATTCGA 922 Query 1032 CAACTCGCTAAGACTCTTATCGCAGAATGGAAGGAGTTGGTGGATCAATGGGTGAATACC 1091 |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 923 CAACTCGCAAAGACTCTTATCGCAGAGTGGAAGGAGTTGGTGGACCAATGGGTGAATACC 982 Query 1092 ACAAAGGAAATCACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCCTTGAT 1151 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 983 ACAAAGGAAATTACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCGTTGAT 1042 Query 1152 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGATATCTTTACACCTGAACCAAAC 1211 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1043 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGACATCTTTACACCGGAACCAAAC 1102 Query 1212 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAACTCT 1271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1103 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAATTCT 1162 Query 1272 GAAGAACACAACACAAGCCGAGAGCATGAAAGAAGGCCACAAAATATCGCCAAGAGAAAA 1331 ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| | Sbjct 1163 AAAGAATACAACACAAGCCGAGAGCACGAAAGAAGACCACAAAATATCGCCAAGAGAAGA 1222 Query 1332 CCTGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1391 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1223 CCAGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1282 Query 1392 GCTACTGATTTTGATGGGACTAGAAGACCTGTAAAGCAAAGTACAGAGCAAAGGATGAAG 1451 | | ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1283 GATGCTGATTTTGATGGCACTAGAAGACCTCTAAAGCAAAATACAGAGCAAAGGATGAAG 1342 Query 1452 AACGAAACGGTATCTGTTCACAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1511 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1343 AACGAAACGGTATCAGTTCTCAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1402 Query 1512 ACAGAACAGAAGCGGAAAGCTCCTGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1571 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1403 ACAGAACAGAAGCGGAAAGCTCCCGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1462 Query 1572 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAAAGCTACCAGCATCACGAGAAT 1631 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1463 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAGAGCTACCAGCATCATGAGAAT 1522 Query 1632 GCCAAGAAGCAGCGAACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1691 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1523 GCCAAGAAGCAGCGGACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1582 Query 1692 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAATGGGAGAAAATAG 1751 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1583 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAACGGGCGAAAATAG 1642 Query 1752 TTTCTGCTTTGTTCAAA-TGGTGAATAATTCTCGGCAAAAG--ATATTACTCCATACTTA 1808 |||| || ||| |||| |||||||||| |||||||||||| || |||||||||||||| Sbjct 1643 CTTCTTCTCTGT-CAAAATGGTGAATAACTCTCGGCAAAAGTCATTTTACTCCATACTTA 1701 Query 1809 CCACACATATCTCGCAATCTCTGGTGCAATAAA-GGTAAACAGAGTCTAGTTCCACAAAG 1867 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1702 CCACACATATCTCGCAATCTCTGGTGCAATAAAAGGTAAACAGAGTCTAGTTCCACAA-G 1760 Query 1868 CTGGAGACAGAAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1927 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1761 CTGGATACAGTAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1820 Query 1928 AACTGTTTACTCCTCTGTTTTGTTCTGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1987 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1821 AACTGTTTTCTCCTCTGTTTTGTTCAGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1880 Query 1988 ACCAATTATTGTTTCTTTTATGTGTTCTTTACTACATTCTTGAGACTTTCGGTACAGTCC 2047 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1881 CCCAATTATTGTTTCTTTTATGTGTTCTT-ACTACATTCTTGAGACTTTCGGTACAGTGT 1939 Query 2048 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 2097 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1940 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 1989 > Ahg915740 jgi|Araly1|915740|Al_scaffold_0008_491 Length=447 Score = 551 bits (298), Expect = 8e-156 Identities = 403/448 (90%), Gaps = 29/448 (6%) Strand=Plus/Plus Query 531 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAAAATCGCCGAG 590 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAGGAGACAAAATCGCCGAG 60 Query 591 CTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGAATTGTCTGTT 650 |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 61 CTTTTATTCTCCTGCAGAGTGAGTCGTTGCATCGGATGCGACCATCTTGAATTGTCTATT 120 Query 651 CCCGGAGACGACGAGGCTAA------CCGTGGAACCACCGGAAATGGTGGTGGTGGTACG 704 | |||||||||||||||||| ||||||||||||||| | || |||||||||||| Sbjct 121 CACGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGGTGGTGGTACG 180 Query 705 GCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGC 764 |||||||||||||||||||||| | |||||||||| || |||| ||| | | ||| Sbjct 181 GCGGTTGATGAAGATTATGAGG-T--TGGTGGTAGT-AA-AGAG---AGC--A-A--AGC 227 Query 765 AGAGGGGATAATAATCAGATTGTTAGCAA-TTATACATTTGATGAAGCTGAGGCTTTGAG 823 |||| ||||||||||||| || ||||||||||||||||||| | |||||||| Sbjct 228 --------TAAT-ATCAGATTGTTAGTAATTTATACATTTGATGAAGCTCACGCTTTGAG 278 Query 824 TGATGAGATTGAAGAGTTTTCTGTGGTTTCTAAGGAGGTTGCTAGGATCAAAGAGATCTT 883 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 279 TGATGAGATTGAAGAGTTATCTGTGGTTTCTAAGGAGGTTGCTAGTATCAAAGAGATCTT 338 Query 884 GCTCAACAAAGAAGATGAGCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 943 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 339 GCTCAACAAAGAAGATGATCCAAACTCGGTGTTACTCGATTCTTTAAGACATCTTAAGTT 398 Query 944 GATGTCTTTGAATGTGGATATTCTTAAG 971 |||||||||||||||||||||||||||| Sbjct 399 GATGTCTTTGAATGTGGATATTCTTAAG 426 > Ahg940650 jgi|Araly1|940650|scaffold_601194.1 Length=508 Score = 316 bits (171), Expect = 3e-85 Identities = 218/239 (91%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 521 TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCAGAAGAGACAA 580 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 11 TCATGCGATCATGGTGGCTGCTACTGATTGTCCTAACAAATTCAAATCCATAGGAGACAA 70 Query 581 AATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGTTGCGTCGGATGCGACCATCTTGA 640 | ||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||| Sbjct 71 ATTCGCCCAGCTTTTATTCTCCTGCAGAGTGGGTCGTTGCATCGGATGCGACCATCTTGA 130 Query 641 ATTGTCTGTTCCCGGAGACGACGAGGCTAA-C-CG----TGGAACCACCGGAAATGGTGG 694 |||||||||||||||||||||||||||||| | || |||||||||||| | || || Sbjct 131 ATTGTCTGTTCCCGGAGACGACGAGGCTAATCGCGGCCGTGGAACCACCGGTGACGGCGG 190 Query 695 TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCTGGTGGTAGTAAAGAGAGCAAAG 753 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 191 TGGTGGTACGGCGGTTGATGAAGATTATGAGGTTG--G-TGGTAGTAAAGAGAGCAAAG 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79799063275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5