BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05190.1
Length=2442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939938 jgi|Araly1|939938|scaffold_600482.1 1509 0.0
Ahg487310 jgi|Araly1|487310|fgenesh2_kg.6__444__AT5G05200.1 200 4e-50
> Ahg939938 jgi|Araly1|939938|scaffold_600482.1
Length=1817
Score = 1509 bits (817), Expect = 0.0
Identities = 945/1008 (94%), Gaps = 4/1008 (0%)
Strand=Plus/Plus
Query 314 TTGAAATTTGGTACCAACAATGGCGAGCCAGACGGGTCAGAAAATTCGGTTGGTGAGGTG 373
||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct 4 TTG-AATTTGGTACCAACAATGGCGAGCCAGAAGGGTCAGAAAATCCGGTTGGTGAAATG 62
Query 374 TCCCAAGTGCTTGAAGATTCTACAGGAAGACGAAGATGTTCCTGTTTATCAGTGCGGTGG 433
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 63 CCCCAAGTGCTTTAAGATTCTACAGGAAGACGAAGATGTTCCTGTTTATCAGTGTGGTGG 122
Query 434 TTGTTCCGCCATTCTTCAAGCGAAAAGGCGGAACATTGCTCCAAGCAGTACACCAAGTGC 493
|||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||
Sbjct 123 TTGTTCCGCCATTCTTCAAGCGAAAAAGCGAAACACTGCTCCAAACAGTACACCAAGTGC 182
Query 494 AGGAGAGACAGAGAGGGCTCAAGCCAATGAGCCGCAAAGCGTACCTGAAACCAACAATGT 553
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
Sbjct 183 AGGAGAGACAGAGAGGGCTCAAGCTAATGAGCCGCGAAGCGTACCTGAAACCAACAATAT 242
Query 554 GTCCAGCAGCTCGGGGCAGGACACGGTTCTGCCGTCATCTCCAGGTCGTTCCGTGGACCA 613
|||||||||||||||||||||||||||||| |||||||| ||||||| ||| | ||||||
Sbjct 243 GTCCAGCAGCTCGGGGCAGGACACGGTTCTTCCGTCATCCCCAGGTCCTTCTGCGGACCA 302
Query 614 AGAGTATGAGAAAGGTAGGAATGCATCCATGGAGTCTACGGAGAAGGAGCTTGATGACTT 673
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 303 AGAGTATGAGAAAGGTAGGAATGCATCAATGGAGTCTACGGAGAAGGAGCTTGATGAGTT 362
Query 674 AGAGTTATCTAATGGAGATGGGACAAATGAAATTCAAGAGCAGGAATGTTCACTTGGTGA 733
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 363 AGAGTTATCGAATGGAGATGGGACAAATGAAATTCAAGAGCAGGAACGTTCAGTTGGTGA 422
Query 734 TTCTGAGAAGAATGAAAGAGAAGACAACTCCAGATTGGAGTCTCATATGATGAACACCGT 793
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 423 TTCTGAGAAGAATGAAGGAGGAGACATTTCCAGATTGGAGTCTCATATGATGAACAGCGT 482
Query 794 AGCAGAAGCTGCAGGATCTGGATCTAGCTCTGGAAGCTTGAGCGTTGATCATGTGGTGGC 853
|||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 483 GGCAGAAGCTGCAGGATCTGGGGCTAGCTCTGGAAGCTTGAGTGTTGATCATTTGGTGGC 542
Query 854 TGCAAGAGCGAGTAATCCATCCGGTAACTCTGAGATTTCACCGGATGCTTCCCCCGTAGA 913
||||||||||||||||||||| |||||| || | |||||||| |||||||||| || ||
Sbjct 543 TGCAAGAGCGAGTAATCCATCTGGTAACGCTAAAATTTCACCAGATGCTTCCCTTGTTGA 602
Query 914 AGAGAAGCAAAGCCAACTTGACATTCTTGCAAACAAGACTCCTTCTGCTTATGATGTGGT 973
|||| ||||||||||| |||| |||| |||||||||||| | ||||||||||||||||
Sbjct 603 AGAGGAGCAAAGCCAAGTTGATTTTCTAGCAAACAAGACT-C--CTGCTTATGATGTGGT 659
Query 974 GGCTGCAAGAGCGAGTAATTCATCTGGCAATGCTGAGATCTCACCTGATGCTTCCCCTGT 1033
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 GGCTGCAAGAGCGAGTAATTCATCTGGTAATGCTGAGATCTCACCTGATGCTTCCCCTGT 719
Query 1034 TGAAGAGAAGCAAAGCCAACTTGATTATCCTGCAAACAAGACTTCTTCTGCTTATGATGG 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGAGAAGCAAAGCCAACTTGATTATCCTGCAAACAAGACTTCTTCTGCTTATGATGG 779
Query 1094 GAGTGAGTCTTCCTCTGACGAAAGGGAAGGCCAACTTCTCGATGATGACGAACAATGGAA 1153
|||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 780 GAGTGAGTCTTCGTCTGATGAAAGGGAAGACCAACTTCTCGATGATAACGAACAATGGAA 839
Query 1154 TGCTCTTCAGAAAATAAGATCAGGCAAATTTGAGATGCATAGATACCCTGGGTATAAGGA 1213
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 840 TGCTCTTCAGAAAATAAGATCAGGCAAATTTGAGATGCATAGATATCCTGGATATAAGGA 899
Query 1214 GCAAGGCGCTAGTTCCTCCTCCCCTTTCTCTGAGAATAGGCGCAATGGGATTACCACATA 1273
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 GCAAGGCGCTAGCTCCTCCTCCCCTTTCTCTGAGGATAGGCGCAATGGGATTACCACATA 959
Query 1274 CAACGAGCGGCATCAGAACAGGTCTCTACAGCTAGAGGGACCAGGAGG 1321
|||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 960 TAACGAGCGGCATCAGAACAGGTCTCTGCAACTAGAGGGACCAGGAGG 1007
Score = 1360 bits (736), Expect = 0.0
Identities = 786/811 (97%), Gaps = 0/811 (0%)
Strand=Plus/Plus
Query 1390 GAGAATCATACACACGTGGAAGCCCTTCCCATCCGTCACATGATGAGTTTGATCGCTATC 1449
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1007 GAGAACCATACACACGTGGAAGCCCTTCATATCCGTCACATGATGAGTTTGATCGCTATT 1066
Query 1450 CCCGTGCACACTCACTTCAAATGCCTTCATACGCTGGAGGCATGAACCACGATTTTGTTG 1509
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1067 CCCGTGCACACTCTCTTCAAATGCCTTCATACGCTGGAGGCATGAACCACGAATTTGTTG 1126
Query 1510 ACTATATGTATCACAACAACCCAAGGGCAAGAGGTCAGGGCCAAGGAAGTAGGATCTCAG 1569
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1127 ACTATATGTATCACAACAACCCGAGGGCAAGAGGTCAGGGCCAAGGAAGTAGGATCTCAG 1186
Query 1570 GTGAAATGGGAAGAAACCATGGCGGTTGGTATTCAGGTCAGCTTCATAATTCTTACAGTT 1629
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GAGAGATGGGAAGAAACCATGGCGGTTGGTATTCAGGTCAGCTTCATAATTCTTACAGTT 1246
Query 1630 CATATTCTGCAAGTCCACAGAGACCAATGGAACAACCTGAGTATCATCCGAGATGGAGGC 1689
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1247 CATATTCTGCAAGTCCACAGAGACCAATGGAACAACCTGAGTATCATCGGAGATGGAGGC 1306
Query 1690 GTGAGATAGTCTCAGACGTGGAGGATCATCAGCGTAATAGACATGCTGGCCACCACCATG 1749
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1307 GCGAGATAGTCTCGGACGTGGAGGATCATCATCGTAATAGACATGCTGGCCACCACCATG 1366
Query 1750 AGTTACAGACCCGTCGTCTAAGAGAGAGACAACGTGTGGCCAAGCGTCATGTCCGTCCAA 1809
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AGTTACAGACCCGTCGTCTAAAAGAGAGACAACGTGTGGCCAAGCGTCATGTCCGTCCAA 1426
Query 1810 CAGCTGGTGGGGCACCTTTTGTTAGCTGTTACAGTTGCTCAGAAAACCTGCAGCTTCCTG 1869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 CAGCTGGTGGGGCACCTTTTGTTAGCTGTTACAGTTGCTCAGAAAACCTGCAGCTTCCTG 1486
Query 1870 TAGACTTTCTCATTTTCAAGAGGAAACATCATCTTCTCAGATGCGGCACTTGCACCACTG 1929
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1487 TAGACTTTCTCATTTTCAAGAGGAAGCATCATCTTCTCAGATGCGGCACTTGCACCTCTG 1546
Query 1930 TTCTCAGATTCTCACTTCAGTCCAGAAATCATTTAGTTCCTGCAGTAACACATGACATAA 1989
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1547 TTCTCAGATTCTCACTTCAATCCAGAACTCATTTAGTTCCTGCAGTAACACATGACATAA 1606
Query 1990 ATGCTAATAGGAATAGCAATTCAACATCAGAGTCTCCCATAGACAAAGCTCCCTCCAAAC 2049
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1607 ATGCTAATAGGAATAGCAATTCAACATCAGAGTCTCCCAGAGACAAAGCTCCCTCCAAAC 1666
Query 2050 CTGAAAAGCTGAGATCCTCTGTTCAGGATGAGGAGCTACCTGTGGCTAGAGGCTCTCCGC 2109
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 1667 CTGAAAAGCTGAGATCCTCTGTTCAGGATGAGGAGCTACCTGTGTCTAGAGGTTCTCCAC 1726
Query 2110 TTCACCGACTAATGGGATATTCTACTGTAAGCCAAGTCTTTAAAGTTTCACAGCGTCCTC 2169
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1727 TTCACCGACTAATGGGATATTCTACTGTAAGCCAAGTCTTTAAAGCTTCACAGCGTCCTC 1786
Query 2170 CTTCTATATAGATCTCTGCTTCAGATGAAGC 2200
||||| |||||||||||||||| ||||||||
Sbjct 1787 CTTCTGTATAGATCTCTGCTTCTGATGAAGC 1817
> Ahg487310 jgi|Araly1|487310|fgenesh2_kg.6__444__AT5G05200.1
Length=1892
Score = 200 bits (108), Expect = 4e-50
Identities = 125/133 (94%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 2312 AAAGTAGAAACCATGACACTTGTGAAAAATTATACaaaaaaaTA-GAAGAAGATATAGTT 2370
||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 1892 AAAGTAGAAACCATGTCACTTGTGCAAAATTATACAAAAAAATATGAAGAAGATATTGTT 1833
Query 2371 CATCTGTTGTATATAGTCATGATATGTTTGTAACAAGATTGAATTCATCATCGTTCTTGG 2430
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||
Sbjct 1832 CATCTGTTGTATATAGTCATGATATGTTTGTAACAAGATTAAATTCATCATTGTTCCTGG 1773
Query 2431 CTTGAT-AATCTA 2442
|||||| ||||||
Sbjct 1772 CTTGATCAATCTA 1760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92026031920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5