BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05260.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325159 jgi|Araly1|325159|fgenesh1_pm.C_scaffold_6000379 2329 0.0
Ahg887655 jgi|Araly1|887655|Al_scaffold_0022_8 1474 0.0
> Ahg325159 jgi|Araly1|325159|fgenesh1_pm.C_scaffold_6000379
Length=1599
Score = 2329 bits (1261), Expect = 0.0
Identities = 1477/1582 (93%), Gaps = 11/1582 (1%)
Strand=Plus/Plus
Query 1 ATGCTCGCGTTTATTATAGGTTTGCTTCTTCTTGCATTAACTATGAAGCGTAAGGAGAAG 60
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 19 ATGCTTGCGTTTATTCTAGGTTTGCTTCTCCTTGCATTAACTATGAAGCGTAAGGAGACG 78
Query 61 AAGAAAACCATGTTAAT---TAGCC-CTACGAGAAACCTCTCTCTCCCTCCCGGGCCGAA 116
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 79 AAGAAAACCATGTTAATGACTAGCCAC-ACGAGAAACCTCTCTCTCCCTCCCGGGCCGAA 137
Query 117 ATCTTGGCCTTTAATCGGAAACCTACCGGAAATACTAGGGAGGAACAAACCGGTGTTCCG 176
|||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 138 ATCTTGGCCTCTAATCGGAAACTTACCGGACATACTAGGGAGGAACAGACCGGTGTTCCG 197
Query 177 GTGGATACATTCTCTCATGAAAGAACTCAACACCGATATTGCATGTATCCGTCTTGCGAA 236
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 198 TTGGATACATTCTCTTATGAAAGAACTCAACACCGATATTGCATGTATCCGTCTTGCCAA 257
Query 237 TACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGAGAGATTCTGAAGAAGCAAGA 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 258 TACTCACGTGATCCCCGTGACATCCCCGAGAATTGCAAGGGAGATTCTGAAGAAGCAAGA 317
Query 297 CTCCGTTTTCGCCACTAGACCGCTAACGATGGGCACGGAGTACTGCAGCCGCGGGTACTT 356
|||| |||||||||||||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct 318 CTCCCTTTTCGCCACTAGACCACTAACAATGGGGACAGAGTACTGCAGCCGCGGGTACTT 377
Query 357 GACCGTTGCGGTGGAGCCACAAGGAGAGCAGTGGAAGAAGATGAGGAGAGTGGTGGCATC 416
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 378 GACTATTGCGGTGGAGCCACAAGGAGAGCAGTGGAAGAAGATGAGGAGAGTGGTGTCATC 437
Query 417 TCACGTGACGAGCAAGAAGAGCTTCCAAATGATGCTACAAAAGAGAACCGAAGAGGCTGA 476
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 438 TCACGTGACGAGCAAGAAGAGCTTCCAATTGACGCTCCAAAAGAGAACCGAAGAGGCTGA 497
Query 477 TAACTTAGTCCGGTACATCAATAACCGTAGTGTCAAAAACCGTGGTAAT-G--CT--TT- 530
|||||| |||||||||||||||||||| ||||||||||||||||||||| | | ||
Sbjct 498 TAACTTCGTCCGGTACATCAATAACCGCAGTGTCAAAAACCGTGGTAATGGTAATGGTTA 557
Query 531 TGTGGTTATTGATTTAAGGCTTGCGGTACGGCAATACAGTGGAAATGTAGCTCGGAAGAT 590
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 558 TGTGGTTATTGATTTAAGGCTTGTGGTGCGGCAATACAGCGGAAATGTAGCTCGGAAGAT 617
Query 591 GATGTTTGGTATAAGGCATTTTGGTAAAGGAAGTGAAGATGGATCGGGACCAGGGTTGGA 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 618 GATGTTTGGTATAAGGCATTTTGGTAACGGAAGTGAAGATGGATCGGGACCAGGGTTCGA 677
Query 651 AGAGATTGAACATGTGGAATCTTTGTTTACGGTTTTAACCCATCTTTACGCCTTTGCATT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGAGATTGAACATGTGGAATCTTTGTTTACGGTTTTAACCCATCTTTACGCCTTTGCATT 737
Query 711 GTCAGATTATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCATGAGAAGGTTGTGAG 770
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 738 GTCAGATTATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGGCATGAGAAGATTGTGAG 797
Query 771 TAACGCAATGAGAAATGTAAGTAAGTATAACGACCCTTTTGTTGATGAAAGACTCATGCA 830
| | ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 798 TGATGCAATGAGAAAGGTAAGTAAGTATAACGATCCTTTTGTTGATGAAAGACTTATGCA 857
Query 831 ATGGCGAAATGGGAAGATGAAAGAACCTCAAGATTTTCTTGACATGTTTATAATAGCTAA 890
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 858 TTGGCGAAATGGGAAGATGAAAGAGCCTCAAGATTTTCTTGACATGTTTATAATGGCAAA 917
Query 891 AGACACTGACGGGAAGCCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGACGGAACT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 918 AGACACTGACGGGAAGCCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGACGGAGCT 977
Query 951 AATGTTGGCGACGGTTGATAATCCGTCTAACGCGGCAGAGTGGGGTATGGCGGAGATGAT 1010
||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 978 AATGTTGGCGACGGTGGATAATCCGTCTAATGCGGCAGAGTGGGCTATGGCGGAGATGAT 1037
Query 1011 TAACGAGCCGAGCATCATGCAAAAAGCCGTGGAAGAGATTGATAGGGTAGTTGGAAAAGA 1070
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1038 TAACGAGCCAAGCATCATGCAAAAAGCCGTGGAGGAGATCGATAGGGTAGTTGGAAAAGA 1097
Query 1071 CCGTCTTGTCATTGAGTCTGATCTCCCAAATCTTAACTATGTGAAGGCTTGTGTGAAAGA 1130
|||||||||| ||||||| || ||||||||||| ||||| || |||||||||||||||||
Sbjct 1098 CCGTCTTGTCCTTGAGTCCGACCTCCCAAATCTCAACTACGTAAAGGCTTGTGTGAAAGA 1157
Query 1131 AGCATTCCGGTTACACCCCGTGGCACCGTTCAACCTCCCTCACATGTCCACCACTGATAC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1158 GGCATTCCGGTTACACCCCGTGGCACCGTTCAACCTCCCTCACATGTCCACCGCTGACGC 1217
Query 1191 TGTGGTAGACGGTTATTTCATCCCCAAGGGAAGCCACGTATTGATTAGTCGTATGGGGAT 1250
|| |||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 1218 TGAGGTAGACGGTTACTTCATCCCCAAGGGAAGCCATGTGCTGATTAGTCGTATGGGGAT 1277
Query 1251 TGGGAGAAATCCTAGTGTGTGGGACAAGCCGCATAAGTTCGACCCTGAGAGACATTTGAG 1310
||||||||| ||||| || ||||||||||| | |||||||||||| ||||||||||||
Sbjct 1278 TGGGAGAAACCCTAGCGTATGGGACAAGCCTCTTAAGTTCGACCCGGAGAGACATTTGTT 1337
Query 1311 CACTAACACATGTGTGGATCTAAACGAGTCTGATCTGAATATAATATCGTTCAGTGCAGG 1370
|| ||||| | | ||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 1338 CAATAACATAGGCGTGGATCCAAACGAGCCTGATCTCAATATAATATCGTTCAGTGCAGG 1397
Query 1371 ACGAAGAGGTTGTATGGGTGTGGACATTGGGTCAGCCATGACGTACATGTTACTGGCTCG 1430
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1398 ACGAAGAGGGTGTATGGGTGTGGACATTGGGTCAGCCATGACGTACATGTTGTTGGCTCG 1457
Query 1431 GTTGATTCAAGGATTCACGTGGTTACCAGTGCCTGGTAAGAATAAGATTGATATTTCAGA 1490
|||||||||||| |||||||||| ||||||||| ||| ||| |||||| |||||||||||
Sbjct 1458 GTTGATTCAAGGGTTCACGTGGTCACCAGTGCCCGGTGAGAGTAAGATCGATATTTCAGA 1517
Query 1491 AAGCAAGAATGATCTTTTTATGGCAAAACCATTATACGCGGTTGCCACACCTCGTTTAGC 1550
|| ||||||||||||||||||||||||||||||| |||||||||| | ||||||| | ||
Sbjct 1518 AAACAAGAATGATCTTTTTATGGCAAAACCATTACACGCGGTTGCAATACCTCGTCTGGC 1577
Query 1551 TCCACATGTGTATCCAACCTAA 1572
||||||||||||||||||||||
Sbjct 1578 TCCACATGTGTATCCAACCTAA 1599
> Ahg887655 jgi|Araly1|887655|Al_scaffold_0022_8
Length=1392
Score = 1474 bits (798), Expect = 0.0
Identities = 964/1043 (92%), Gaps = 15/1043 (1%)
Strand=Plus/Plus
Query 9 GTTTATTATAGGTTTGCTTCTTCTTGCATTAACTATGAAGCGTAAGGAGAAGAAGAAAAC 68
||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||| |||||
Sbjct 27 GTTTATTCTAGGTTTGCTTCTCCTTACATTAACTATGAAGCGTAAGGAGACGAACAAAAC 86
Query 69 CATG---TTAATTAGCC-CTACGAGAAACCTCTCTCTCCCTCCCGGGCCGAAATCTTGGC 124
|||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CATGATATTCATTTGCCAC-ACGAGAAACCTCTCTCTCCCTCCCGGGCCGAAATCTTGGC 145
Query 125 CTTTAATCGGAAACCTACCGGAAATACTAGGGAGGAACAAACCGGTGTTCCGGTGGATAC 184
|| |||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 146 CTCTAATAGGAAACCTGCCAGAAATACTAGGGAGGAACAAGCCGGTGTTCCGGTGGATAC 205
Query 185 ATTCTCTCATGAAAGAACTCAACACCGATATTGCATGTATCCGTCTTGCGAATACTCACG 244
||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 206 ATTCTCTCATGAAAGAACTTAACACCGATATTGCGTGTATCTGTCTTGCGAATACTCACG 265
Query 245 TGATCCCCGTGACATCCCCGAGAATTGCAAGAGAGATTCTGAAGAAGCAAGACTCCGTTT 304
||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 266 TGATCTCCGTGACATCCCCGAGAATTGCAAGGGAGATTTTGAAGAAGCAAGACTCCGTTT 325
Query 305 TCGCCACTAGACCGCTAACGATGGGCACGGAGTACTGCAGCCGCGGGTACTTGACCGTTG 364
| ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||| |||
Sbjct 326 TTGCCACTAGACCGCTAACAATAGGCACGGAGCACTGCAGTCGCGGGTACTTGACCATTG 385
Query 365 CGGTGGAGCCACAAGGAGAGCAGTGGAAGAAGATGAGGAGAGTGGTGGCATCTCACGTGA 424
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 386 CGGTGGATCCACAAGGAGAGCAGTGGAAAAAGATGAGGAGAGTGGTGGCATCTCACGTGA 445
Query 425 CGAGCAAGAAGAGCTTCCAAA-TGATGCTACAAAAGAGAACCGAAGAGGCTGATAACTTA 483
|||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 446 CGAGCAAGAAGAGCTT-CAAATTGATGCTTGAAAAGAGAACCGAAGAGGCTGATAACTTG 504
Query 484 GTCCGGTACATCAATAACCGTAGTGTCAAAAACCGTGGTAATGCT--T--T-TGT-GGTT 537
|||||||||||||||||||| |||||||||||| ||| ||||| | | | | | ||||
Sbjct 505 GTCCGGTACATCAATAACCGCAGTGTCAAAAACTGTGATAATGGTAATGGTCTTTCGGTT 564
Query 538 ATTGATTTAAGGCTTGCGGTACGGCAATACAGTGGAAATGTAGCTCGGAAGATGATGTTT 597
|||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||
Sbjct 565 ATTGATTTAAGGCTTGTGTTGCGGCAATACAGCGGAAATGTAGCTCGGAAGATGATGTTT 624
Query 598 GGTATAAGGCATTTTGGTAAAGGAAGTGAAGATGGATCGGGACCAGGGTTGGAAGAGATT 657
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 625 GGTATAAGGCACTTTGGTAAAGGAAGTGAAGATGGATCGGGACCAGGGTTCGAAGAGATT 684
Query 658 GAACATGTGGAATCTTTGTTTACGGTTTTAACCCATCTTTACGCCTTTGCATTGTCAGAT 717
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 685 GAACATGTTGAATCTTTGTTTACAGTTTTAACCCATCTTTACGCCTTTGCATTGTCGGAT 744
Query 718 TATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCATGAGAAGGTTGTGAGTAACGCA 777
|||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||
Sbjct 745 TATGTCCCGTGGCTAAGGTTCTTGGACTTGGAAGGCCAAGAGAAGATTGTGATTGACGCA 804
Query 778 ATGAGAAATGTAAGTAAGTATAACGACCCTTTTGTTGATGAAAGACTCATGCAATGGCGA 837
|||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 805 ATGAGAAATGTAAGCAAGTATAACGATCCTATTGTCGATGAAAGACTCATGCAATGGCGA 864
Query 838 AATGGGAAGATGAAAGAA-CCTCAAGATTTTCTTGACATGTTTATAATAGCTAAAGACAC 896
||||| || |||||| || ||||||||||||||||||||||||||||| || ||||||||
Sbjct 865 AATGGAAATATGAAA-AAGCCTCAAGATTTTCTTGACATGTTTATAATGGCGAAAGACAC 923
Query 897 TGACGGGAAGCCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGACGGAACTAATGTT 956
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 924 TGACGGGAAACCTACTCTGTCGGACGAAGAGATCAAAGCACAAGTGAAGGAACTAATGTT 983
Query 957 GGCGACGGTTGATAATCCGTCTAACGCGGCAGAGTGGGGTATGGCGGAGATGATTAACGA 1016
||||||||| |||||||||||||| ||||| || |||| ||||||||||||||||| ||
Sbjct 984 GGCGACGGTGGATAATCCGTCTAATGCGGCGGAATGGGCCATGGCGGAGATGATTAATGA 1043
Query 1017 GCCGAGCATCATGCAAAAAGCCG 1039
|||||||||||||||||||||||
Sbjct 1044 GCCGAGCATCATGCAAAAAGCCG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5