BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05270.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487319 jgi|Araly1|487319|fgenesh2_kg.6__453__AT5G05270.1 1249 0.0
> Ahg487319 jgi|Araly1|487319|fgenesh2_kg.6__453__AT5G05270.1
Length=813
Score = 1249 bits (676), Expect = 0.0
Identities = 777/824 (94%), Gaps = 13/824 (2%)
Strand=Plus/Plus
Query 3 GCTTTGAACGTTAGCAAAATTATGTTACCTACCACCAGTCCCTGGCTTATTATATAGAGA 62
||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct 1 GCTTTGAACGTTAGC--AA-TATGTTACCTACCACCAGTCCCTGGCTTA--ATAT----A 51
Query 63 GAGATATTCACATTTACAAT-TTCGATATTGTTTCTCTAAGATCGTAAAATAGTACACCA 121
|||||||||||||||| || | |||||| |||||||| |||| |||||||||||||||
Sbjct 52 TAGATATTCACATTTAC-ATCATAGATATTCTTTCTCTATGATCATAAAATAGTACACCA 110
Query 122 AGCCATTTATAAATTTCTTCACTCTCAGATTCAAAAT-AATATAAATTAGAAATGGGAAC 180
|||| |||||||||| |||||||||||| ||| || | ||||||||||||||||||||||
Sbjct 111 AGCCGTTTATAAATTCCTTCACTCTCAGTTTC-AAGTAAATATAAATTAGAAATGGGAAC 169
Query 181 AGAGATGGTCATGGTTCACGAGGTTCCTTTTCCTCCACAGATCATCACTTCCAAGCCACT 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 170 AGAGATGGTCATGGTTCACGATGTTCCTTTTCCTCCACAGATCATCACTTCCAAGCCACT 229
Query 241 CTCTCTTCTGGGCCAAGGGATCACAGACATTGAGATCCACTTTCTTCAAGTGAAGTTCAC 300
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 230 CTCTCTTCTGGGCCAAGGGATCACAGACATCGAGATCCACTTTCTTCAAGTAAAGTTCAC 289
Query 301 TGCGATCGGAGTTTACTTAGATCCTTCAGATGTTAAAACACATCTTGATAACTGGAAAGG 360
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 290 GGCGATCGGAGTTTACTTGGATCCTTTAGATGTTAAAACCCATCTTGATAACTGGAAAGG 349
Query 361 CAAAACCGGAAAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCGCGGA 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CAAAACCGGACAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCGCGGA 409
Query 421 GATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGCTCAGTACGGAGT 480
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 410 GATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAAATAAAAGGAGCTCAATACGGAGT 469
Query 481 GCAGCTAGAGAATACGGTGAGAGATCGTTTGGCTGAGGAGGATAAGTACGAGGAAGAAGA 540
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GCAGCTAGAGAATTCTGTGAGAGATCGTTTGGCTGAGGAGGATAAGTACGAGGAAGAAGA 529
Query 541 AGAAACTGAGCTCGAGAAGGTCGTTGGCTTTTTCCAGTCCAAGTACTTCAAAGCTAACTC 600
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 530 AGAAACCGAGCTCGAGAAGGTCGTTGGCTTTTTCCAGTCTAAGTACTTCAAAGCTAATTC 589
Query 601 CGTTATCACTTACCATTTCTCAGCCAAAGATGGCATTTGCGAGATCGGGTTTGAGACGGA 660
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CATCATCACTTACCATTTCTCAGCCAAAGATGGCATTTGCGAGATCGGGTTTGAGACGGA 649
Query 661 AGGTAAAGAAGAGGAGAAACTGAAGGTGGAGAATGCGAATGTGGTGGGAATGATGCAGAG 720
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 650 AGGTAAAGAGGAGGAGAAACTGAAGGTGGAGAATGCGAATGTGGTGGGGATGATGCAGAG 709
Query 721 ATGGTATTTGTCCGGAAGTCGTGGAGTCTCACCGTCGACTATTGTCTCCATCGCTGATTC 780
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGGTATTTGTCCGGAAGTCGAGGAGTCTCACCGTCGACTATTGTCTCCATCGCTGATTC 769
Query 781 AATCTCCGCAGTTTTAACCTAAGAACCATGGCCCCTTACATAAA 824
||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 770 GATCTCTGCAGTTTTAACATAAGAACCTTGGCCCCTTACATAAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5