BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05282.1 Length=945 Score E Sequences producing significant alignments: (Bits) Value Ahg487321 jgi|Araly1|487321|fgenesh2_kg.6__455__AT5G05282.1 1315 0.0 > Ahg487321 jgi|Araly1|487321|fgenesh2_kg.6__455__AT5G05282.1 Length=913 Score = 1315 bits (712), Expect = 0.0 Identities = 871/941 (93%), Gaps = 37/941 (4%) Strand=Plus/Plus Query 14 ATTTCCTACTCTTATAGTACAACTTATTTCCTTATGTGTAAAACCCAAAGAAGAACTTGT 73 ||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||| Sbjct 1 ATTTCCTACTCTTATAGAACAACTTATTTCCTTTTGTGTAAAACTCAAATAAGAACTTGT 60 Query 74 ATAAAGAAACAGATCATAAAGGATTTGAGCTTTGATTTTTCTCCATGGATTTATCAAGTC 133 ||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||||| Sbjct 61 ATAAAGAAACAGATCATTAAGGATTTGAGATTTGA--TATCTCCATGGATTTATCAAGTC 118 Query 134 TTTGAGTTTCAGACTGGAAACTAAGCCTCGGAGTAAAAGAGAGAACAAAAGC--ACTCTT 191 ||||||||||||||||||| | ||||||| |||||||||||| ||||||||| | |||| Sbjct 119 TTTGAGTTTCAGACTGGAATCGAAGCCTCAGAGTAAAAGAGAAAACAAAAGCTGA-TCTT 177 Query 192 GTGCTTATCATAGCATGAAGAAACTTGACTCTTTCATCTCAGTCTCTTTCGTAGTCCGAT 251 |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| Sbjct 178 GTGCTTATCATAGCATGAAGAAACTTGAATCTCTCATCTCAGTCTCTTTTGTAGTCCGAT 237 Query 252 TCGAACAGAAACTGGAGCAATAAGAAAAAGAAGAAGAAGAACCTTGAAGGTGAGTTaaaa 311 ||||||| |||| ||||||| ||||||||||| | | || | Sbjct 238 TCGAACATAAACCAGAGCAAT---------AAGAAGAAGAA----G-A----AG-----A 274 Query 312 aaaaaaGAAGATTTGTGCATCTGTTTCTGAAA-CGTTTACAGATGGCTAGATTTTTACTT 370 |||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||| Sbjct 275 AAAAAA-AAGATTTGTGCATCTGTTTCT-AAAGCGTTTACAGATGGCTAGATTCTTACTT 332 Query 371 GCGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 430 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 GAGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 392 Query 431 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGATACACACATGGTGATCATACTAGCC 490 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 393 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGGTACACACATGGTGATCGTACTAGCC 452 Query 491 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 512 Query 551 CGCTGCACGAGAAGGTTCACTCCCAACGAAGATCCAGTTGACACCAATGCAAACGTA--- 607 ||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| Sbjct 513 GGCTGCACGAGAAGGTTCACTCCCGACGAAGATCCAGTTGACACTAACGCAAACGTAAAC 572 Query 608 G---CAAAGGGGATCAAGAAACGGGCGTTGAAGGTTATTCCGGTTGATTCATACAGTCCT 664 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 573 GTAGCAAAGGGGATCAAGAAACGGGCGTTGAAGCTTATTCCGGTTGATTCATACAGTCTT 632 Query 665 GAGCTTAAGATGAAAGCCACGGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 724 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 633 GAGCTTAAGATGAAAGCCACAGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 692 Query 725 ACAGTTAGGGTTTTGCCCAAATGTAACCATGGCTTCCACGTCAAGTGCATCGACACTTGG 784 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 693 ACAGTTAGGGTTTTGCCCAAATGTAGCCATGGCTTCCACGTCAAGTGCATCGACACTTGG 752 Query 785 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 844 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 812 Query 845 GCAAATGGTTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 904 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 GCTAATGGCTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 872 Query 905 TCAATGTTGAGTGTTTGCTTCACCTAAGTAGGTTTTCTTCT 945 |||||||||||| ||||||||||||||||||||||| |||| Sbjct 873 TCAATGTTGAGTTTTTGCTTCACCTAAGTAGGTTTTTTTCT 913 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35073083640 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5