BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05340.1 Length=1222 Score E Sequences producing significant alignments: (Bits) Value Ahg939957 jgi|Araly1|939957|scaffold_600501.1 1659 0.0 > Ahg939957 jgi|Araly1|939957|scaffold_600501.1 Length=1019 Score = 1659 bits (898), Expect = 0.0 Identities = 979/1019 (96%), Gaps = 1/1019 (0%) Strand=Plus/Plus Query 33 TCAAGTCTTTGTTTTAACCTAACAATGGCTTCAAATAAACTTATTTCGATTCTAGTTCTC 92 |||||||||||||||||||| ||||||||||||||| |||||| | | |||||||||||| Sbjct 1 TCAAGTCTTTGTTTTAACCT-ACAATGGCTTCAAATCAACTTACTGCCATTCTAGTTCTC 59 Query 93 GTAGTTACACTTTTACTCCAAGGTGATAACAATTACGTCGTCGAAGCACAACTCACGACT 152 ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| Sbjct 60 GTACTTACACTTTTACTCCAAGGTAATAACAATAACGTCGTCGAAGCACAACTCACTACT 119 Query 153 AACTTCTACTCAACCTCTTGCCCCAACCTCCTCTCCACCGTCCAAACCGCCGTTAAATCT 212 || |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 120 AATTTCTACTCAACCTCTTGCCCTAACCTCCTCTCCACCGTCCAAAGCGCCGTTAAATCT 179 Query 213 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GCCGTTAACAGCGAGGCTCGAATGGGTGCATCTATCCTCCGTCTCTTCTTCCACGATTGC 239 Query 273 TTTGTCAACGGATGCGACGGTTCGATTCTACTAGACGATACGTCAAGCTTCACAGGAGAA 332 || ||||||||||| |||||||||||||| |||| || ||||| |||||||| |||||| Sbjct 240 TTCGTCAACGGATGTGACGGTTCGATTCTGTTAGATGACACGTCGAGCTTCACTGGAGAA 299 Query 333 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAAAACGCGGCTCCAAACCGCAATTCAGCTCGTGGGTTTAATGTGATCGACAACATCAAA 359 Query 393 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCT 452 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TCAGCGGTTGAGAAAGCATGTCCCGGGGTTGTGTCTTGTGCTGATATCTTAGCCATTGCA 419 Query 453 GCTAGAGACTCCGTCGTAGCCCTTGGAGGACCGAACTGGAATGTGAAAGTAGGAAGAAGA 512 ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct 420 GCTAGAGACTCCGTCGTAGTACTTGGAGGGCCGAATTGGAATGTGAAAGTAGGAAGAAGA 479 Query 513 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCACCGACTTCGAGT 572 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 480 GATGCAAGAACGGCGAGTCAAGCGGCAGCGAATAGTAACATTCCGGCGCCGACTTCGAGT 539 Query 573 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTGAGCCAACTCATTAGTAGTTTCAGTGCTGTTGGACTCTCCACCAGAGATATGGTTGCT 599 Query 633 CTCTCTGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 692 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CTCTCCGGCGCACACACGATCGGACAATCCCGTTGCACGAACTTCCGAGCGAGAATCTAC 659 Query 693 AACGAGACAAACATCAATGCCGCCTTCGCCACGACACGTCAACGAACTTGCCCTAGAGCC 752 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 660 AACGAGACAAACATCAACGCCGCCTTCGCCACCACACGTCAACGAACTTGCCCTAGAGCC 719 Query 753 TCCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCAGCTTCTTTCGAC 812 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 720 ACCGGTTCCGGCGACGGAAACCTAGCTCCACTAGACGTCACCACGGCTGCCTCTTTCGAC 779 Query 813 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGGCTCCTCCATTCCGACCAAGTGCTC 872 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 780 AACAACTACTTCAAGAATCTCATGACTCAGAGAGGTCTCCTCCATTCCGACCAAGTGCTC 839 Query 873 TTCAACGGCGGCTCTACTGACTCCATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 932 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 TTCAACGGCGGCTCCACTGACTCTATCGTCCGTGGATACAGCAACAATCCGTCGAGCTTT 899 Query 933 AACTCTGACTTCACGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 992 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AACTCCGACTTCGCGGCGGCGATGATAAAAATGGGTGATATCAGCCCGTTGACTGGTAGT 959 Query 993 AGCGGTGAAATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAGTCTACTCCACGTGT 1051 |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 960 AGCGGTGAGATCCGCAAGGTTTGCGGGAGGACCAACTGATTCAAATCTCCTCCACGTGT 1018 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45633131649 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5