BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05410.1
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487335 jgi|Araly1|487335|fgenesh2_kg.6__469__AT5G05410.1 1956 0.0
Ahg934838 jgi|Araly1|934838|scaffold_402826.1 158 1e-37
> Ahg487335 jgi|Araly1|487335|fgenesh2_kg.6__469__AT5G05410.1
Length=1441
Score = 1956 bits (1059), Expect = 0.0
Identities = 1304/1419 (92%), Gaps = 29/1419 (2%)
Strand=Plus/Plus
Query 1 AGATATTTTGATTTCTGCTAAAGCTGTCTGATaaaaagaagaggaaaactcgaaaaagct 60
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGATATTTTGAGTTCTGCTAAAGCTGTCTGATAAAAAGAAGAGAAAAACTCGAAAAAGCT 60
Query 61 acacacaagaagaagaagaaaagatacgagcaagaagaCTAAACACGAAAGCGATTTATC 120
|||||| ||||||||||||||||||| | ||||| |||||| ||||||||||||||||
Sbjct 61 ACACAC---AAGAAGAAGAAAAGATACGCGGAAGAACACTAAATACGAAAGCGATTTATC 117
Query 121 AACTCGAAGGAAGAGACTTTGATTTTCAAATTTCGTCCCCTATAGATTGTGTTGTTTCTG 180
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 118 TACTCGAAGGAAGAGACTTTGGTTTTCAAATTTCGTCCCCAATAGATTGTGTTGTTTCTG 177
Query 181 GGAAGGAGATGGCAGTTTATGATCAGAGTGGAGATAGAAACAGAACACAAATTGATACAT 240
|||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct 178 GGAAGGAGATGGCAGTTTATGATCAGAGTGGAGATATAAAAAGAACCCAACTTGATACAT 237
Query 241 CGAGGAAAAGGAAATCTAGAAGTAGAGGTGACGGTACTACTGTGGCTGAGAGATTAAAGA 300
||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct 238 CGAGGAAAAGGAAATCTAGAAGTAGAGCTGATGGTACTACTGTGGCTGAGAGGTTGAAGA 297
Query 301 GATGGAAAGAGTATAACGAGACCGTAGAAGAAGTTTCTACCAAGAAGAGGAAAGTACCTG 360
||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||
Sbjct 298 GATGGAAAGAGTACAATGAGAATGTTGAAGAAGTTTCTACCAAGAAAAGGAAAGTACCTG 357
Query 361 CGAAAGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGATGTA 420
| |||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 358 CCAAAGGGTCCAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCAGAGAACGGTCGATGTA 417
Query 421 GTTTCAGAGGAGTTAGGCAAAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCTA 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 418 GTTTCAGAGGAGTTAGGCAGAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCCA 477
Query 481 ATCGAGGTAGCAGGCTTTGGCTTGGTACTTTCCCTACTGCTCAAGAAGCTGCTTCTGCTT 540
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 ATCGAGGTAGTAGGCTTTGGCTTGGTACTTTCCCTACTGCTGAAGAAGCTGCTTCTGCTT 537
Query 541 ATGATGAGGCTGCTAAAGCTATGTATGGTCCTTTGGCTCGTCTTAATTTCCCTCGGTCTG 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGATGAGGCGGCTAAAGCTATGTATGGTCCTTTGGCTCGTCTTAATTTCCCTCGGTCTG 597
Query 601 ATG-CGTCTGAGGTTACGAGTACCTCAAGTCAGTCTGAGGTGTGTACTGTTGAGACTCCT 659
||| | ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 598 ATGGC-TCTGAGGTTACGAGTACGTCGAGTCAGTCTGAGGTGTGTACGGTTGAGACTCCT 656
Query 660 GGTTGTGTTCATGTGAAAACAGAGGATCCAGATTGTGAATCTAAACCCTTCTCCGGTGGA 719
||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| |
Sbjct 657 GGTTGTGTTCATGTGAAAACAGAGGATGCAGATTGTGAATCTAAACCCTTGTTCTGTGAA 716
Query 720 G-TGGAGCCGATGTATTGTCTGGAGAATGGTGCGGAAGAGATGAAGAGAGG-TGTTAAAG 777
| | |||| |||||| |||||||||||||||| |||||||||||||| || |||||| |
Sbjct 717 GCTA-AGCCCATGTATCGTCTGGAGAATGGTGCAGAAGAGATGAAGAG-GGCTGTTAAGG 774
Query 778 CGGATAAGCATTGGCTGAGCGAGTTTGAACATAACTATTGGAGTGATATTCTGAAAGAGA 837
|||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 775 CGGATAAGGATTGGCTGAGTGAGTTTGAACATAACTATTGGAGGGATGTTCTGAAAGAGA 834
Query 838 AAGAGAAACAGAAGGAGCAAGGGATTGTAGAAACCTGTCAGCAACA--A-CAGCAGGATT 894
||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 835 AAGAGAAACAGAAGGAGCAAGAGATTGTAGAAACCTGTCAGCAACAGGAACAGCAGGATT 894
Query 895 CGCTATCTGTTGCAGACTATGGTTGGCCCAATGATGTGGATCAGAGTCACTTGGATTCTT 954
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 CGCTATCTGTTACTGACTATGGTTGGCCCAATGATCTGGATCAGAGTCACTTGGATTCTT 954
Query 955 CAGACATGTTTGATGTCGATGAGCTTCTACGTGACCTAAATGGCGACGATGTGTTTGCAG 1014
|||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||| |||
Sbjct 955 CAGATATGTTTGATGTTGATGAGCTACTACGTGACATAAATGGCGACGACGTGTTTACAG 1014
Query 1015 GCTTAAATCAGGACCGGTACCCGGGGAACAGTGTTGCCAACGGTTCATACAGGCCCGAGA 1074
||||||||||||||| |||||||||||||| | || ||||||||||||||||||| ||||
Sbjct 1015 GCTTAAATCAGGACCAGTACCCGGGGAACAATTTTACCAACGGTTCATACAGGCCTGAGA 1074
Query 1075 GTCAACAAAGTGGTTTTGATCCGCTACAAAGCCTCAACTACGG--A---AT-ACCTCCGT 1128
|||||||| | || ||||||||||| ||||||||||||||||| | || ||||||||
Sbjct 1075 GTCAACAAGGCGGATTTGATCCGCTGCAAAGCCTCAACTACGGTTACGGATTACCTCCGT 1134
Query 1129 TTCAGCTCGAGGGAAAGGATGGTAATGGA-TTCTTCGACGACTTGAGTTACTTGGATCTG 1187
||||| || ||| |||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1135 TTCAGTTCCAGGCAAAGGATGGTAATGGAGTT-TTCGATGACTTGAGTTACTTGGATCTG 1193
Query 1188 GAGAACTAAACAAAACAATATGAAGCTTTTTGGATTTGATATTTGCCTTAATCCCACAAC 1247
||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1194 GAGAACTAAACTAGACAATATGAAGCTTTTCGGATTTGTTATTTGCCTTAATCCCACAAT 1253
Query 1248 GACTGTTGATTCTCTATC-C-GAGTTTTAGTGATATAGAGAACTACAGAACACGTTTTTT 1305
||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1254 GACTGTTGATTCTCTATTTCTGAGTTTTAGTGATATAGAGAACTTCAGAACACTTTTTTT 1313
Query 1306 CTT---GTTATAAAGGTGAACTGTATATAT----CGAAACAGTGATATGACAATAGAGAA 1358
|| |||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1314 TTTTTTGTTATAAAGGTGAAGTGTATATATATATCGAAACAGCAATATGACAATAGAGAA 1373
Query 1359 GACAACTATAGTTTGTTAGTCTGCTTCTCTTAAGTTGTT 1397
|||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GACAACTATAGTTTGTTAGTCTGCTTCTCTTAAGTTGTT 1412
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1407 TGTTTTATGTTTTGTAACAACAGGAATGAATAA 1439
|||||||||||||||||||||||||||||||||
Sbjct 1409 TGTTTTATGTTTTGTAACAACAGGAATGAATAA 1441
> Ahg934838 jgi|Araly1|934838|scaffold_402826.1
Length=1094
Score = 158 bits (85), Expect = 1e-37
Identities = 176/217 (81%), Gaps = 18/217 (8%)
Strand=Plus/Plus
Query 363 AAAGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGAT--GT- 419
||||| |||| |||||||||||||||||||||||||||||| || ||| | ||| ||
Sbjct 207 AAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGAGGACCTGAAAATGG--GATTTGTG 264
Query 420 AGTTTCAGAGGAGTTAGGCAAAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCT 479
| | | ||||||||||| || |||| |||||||||||||| ||||||||| | |||||
Sbjct 265 ACTAT-AGAGGAGTTAGACAGAGGACATGGGGTAAATGGGTCGCTGAGATCCGTGAGCC- 322
Query 480 AATC-GAGGTAGC-AGGCTT-TGGCTTGGTACTTTCCCTACTGCTCA-A-GAAGCTGCTT 534
| | ||||| || ||| || ||||| ||||||||| ||| | ||| | |||||||| |
Sbjct 323 AGGCCGAGGT-GCTAGG-TTATGGCTCGGTACTTTCTCTAGT--TCATATGAAGCTGCAT 378
Query 535 CTG-CTTATGATGAGGCTGCTAAAGCTATGTATGGTC 570
|| ||||||| |||||||| |||||||| |||||||
Sbjct 379 -TGGCTTATGACGAGGCTGCCAAAGCTATATATGGTC 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54240508880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5