BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05440.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325175 jgi|Araly1|325175|fgenesh1_pm.C_scaffold_6000395 992 0.0
> Ahg325175 jgi|Araly1|325175|fgenesh1_pm.C_scaffold_6000395
Length=612
Score = 992 bits (537), Expect = 0.0
Identities = 588/613 (96%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 125 ATGAGGTCACCGGTGCAACTCCAACACGGCTCAGACGCCACTAACGGTTTCCACACGCTG 184
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATGAGGTCACCGGTGCAACTCCAACACGGCTCAGACGCCACAAACGGCTTCCACACGCTG 60
Query 185 CAGCCTCACGATCAGACCGATGGTCCGATCAAGAGAGTGTGTCTCACGCGCGGTATGCAT 244
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CAGCCTCGCGATCAGAACGATGGTCCGATCAGGAGAGTGTGTCTCACGCGCGGTATGCAT 120
Query 245 GTCCCTGAACACGTTGCGATGCACCACACACACGACGTTGGTCCGGACCAGTGTTGCTCC 304
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 121 GTCCCTGAGCACGTTGCGATGCACCACACACACGACGTTGGTCCAGACCAGTGCTGCTCT 180
Query 305 TCGGTGGTGCAGATGATCCACGCGCCGCCTGAGTCCGTGTGGGCTCTTGTGCGGC-GTTT 363
||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| | ||||
Sbjct 181 TCGGTGGTGCAGATGATACACGCGCCGCCGGAGTCTGTGTGGGCTCTCGTGCGACGGTTT 240
Query 364 CGATAATCCGAAGGTTTACAAGAACTTCATCAGACAGTGCCGTATCGTCCAAGGCGATGG 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 -GATAACCCGAAGGTTTACAAGAACTTCATCAGACAGTGCCGTATCGTCCAAGGCGATGG 299
Query 424 ACTACACGTCGGCGATCTCCGGGAGGTCATGGTGGTCTCTGGACTCCCGGCGGTCTCGAG 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTACACGTCGGCGATCTACGGGAGGTCATGGTGGTCTCTGGACTCCCGGCGGTCTCGAG 359
Query 484 CACCGAGAGGCTCGAGATCTTGGACGAGGAGCGTCACGTGATAAGCTTTAGTGTCGTTGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CACCGAGAGGCTCGAGATCTTGGACGAGGAGCGTCACGTGATAAGCTTTAGTGTCGTTGG 419
Query 544 TGGGGACCACAGGCTCAAGAACTACCGATCGGTGACGACACTACACGCGTCGGACGACGA 603
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 420 TGGGGACCACAGGCTCAAGAACTACCGATCGGTGACGACACTACACACGGCGGACGATGA 479
Query 604 AGGTACCGTGGTGGTGGAGTCTTACATCGTTGATGTGCCGCCGGGAAACACGGAGGAGGA 663
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 AGGGACCGTCGTGGTGGAGTCTTACATCGTCGATGTGCCGCCGGGAAACACGGAGGAGGA 539
Query 664 AACTCTAAGCTTCGTTGATACTATCGTCCGGTGCAACCTTCAGTCTCTGGCTCGAAGTAC 723
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AACTCTAAGCTTCGTTGATACTATCGTCCGGTGCAACCTTCAGTCTCTGGCTAGAAGTAC 599
Query 724 CAACCGGCAATAA 736
|||||||||||||
Sbjct 600 CAACCGGCAATAA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5