BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05540.1 Length=1702 Score E Sequences producing significant alignments: (Bits) Value Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1 2279 0.0 Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130 320 2e-86 Ahg940302 jgi|Araly1|940302|scaffold_600846.1 198 1e-49 > Ahg487347 jgi|Araly1|487347|fgenesh2_kg.6__481__AT5G05540.1 Length=1534 Score = 2279 bits (1234), Expect = 0.0 Identities = 1448/1549 (93%), Gaps = 24/1549 (2%) Strand=Plus/Plus Query 11 gtgAAGTCACGTGACCATTATAGATTAT-GCACGTGTTGTCAATCTGTCTCCTTTACGAG 69 ||||||||||||||| |||||||||||| |||||||| ||||||||||| | ||||||| Sbjct 1 GTGAAGTCACGTGACTATTATAGATTATACCACGTGTTATCAATCTGTCT-C-TTACGAG 58 Query 70 GGCGAGCGAGCCGCCGCCGTCAGAAGC-TTCCGTTCTGCTGTCTGAATCGGTCATGGAGG 128 ||| |||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||||| Sbjct 59 GGCTAGCGAGTCGCCGCCGTCAGAAGCTTTCCTTTCCGCTGTCTGAATCGGTTATGGAGG 118 Query 129 ACGTGCTAGCCACGGCAGAGGGAGTGGTTTTAGTAAAGCTGGTGAAGGTAGCGCAAAAGC 188 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 119 ACGTGCTAGCCACGGCAGAGGGAGAGGTTTTAGTAAAGCTGGTGAAGTTAGCGCAAAAGC 178 Query 189 TAGGTCTAAAAGGTGAAA-ACGGAACTTGGAAGGAGTTTTTAGATTTTTATGACAAACAG 247 ||||| || |||| ||| ||||| | |||||||| ||| |||||||||| ||||||||| Sbjct 179 TAGGTTTACAAGG-CAAACACGGATCATGGAAGGAATTTCTAGATTTTTACGACAAACAG 237 Query 248 CTAGGATCTTCGAGCTTAAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTGGCTTTT 307 |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 238 TTAGGATCTTCGAGCTTGAGTGATCCTTCAAAGCGGCGCAAAGATGATTTGGTCGCTTTT 297 Query 308 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTA-AGTCTCTCAAACTCGA 366 ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| Sbjct 298 CTTACTACACTCAAGAAGAAAGAAGATTTGCAGCTGTTGGCTAGGGT-TCTGAAACTCGA 356 Query 367 CAATGATGTTTTTGAGAAATTCAAAAAGAAATCTTTGGATGAGA-CAGCTGAGCAGAGGC 425 ||||||||||||||||||||||| |||||||||| |||||| | || |||||||||||| Sbjct 357 CAATGATGTTTTTGAGAAATTCAGAAAGAAATCTCCGGATGAAACCA-CTGAGCAGAGGC 415 Query 426 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACG 475 Query 486 CTGAGGATTGGGTTAGAACAGGGCTTGGCAAGAAGAAGATGGAACCGACAAAGATCGAAA 545 | ||||||||||| | |||||||||||| ||||| |||||||||||||| |||||||||| Sbjct 476 CCGAGGATTGGGTCATAACAGGGCTTGGGAAGAAAAAGATGGAACCGACCAAGATCGAAA 535 Query 546 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAG 605 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 536 TGATTGCCATTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTCTCGTTAGAG 595 Query 606 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAAC 665 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct 596 TTGCTGCAGTTGACCGTGATTTAAAGGTGATTCTTGACGAATTCGTGAAACCGAATCAAC 655 Query 666 CGGTTGTTGACTATAGGACTTTCATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 725 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 656 CAGTTGTTGACTATAGGACTTTTATTACTGGACTTACTGCTCAAGATCTTGAAAAGGCTA 715 Query 726 CTATATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGAGGATACAATTT 785 || |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 716 CTCTATCCGTGGTAGATATACAGGAAAAATTGCTGATGTTTCTCTCAGAGGATACAATTT 775 Query 786 TGGTTGGTCAAAGTTTGAACCATGATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAA 845 |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 776 TGGTAGGTCAAAGTTTGAACCATGATCTTAAAGTATTGAAGATGGATCATGCCAGAGTAA 835 Query 846 TTGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 905 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TAGATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTA 895 Query 906 AAAGACCTTCTTTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 965 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 896 AAAGACCTTCTTTGAATCATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAAG 955 Query 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 GTGTTCCCCACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1015 Query 1026 TAGATAATGGAGCAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1085 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 TAGAGAATGGAGTAGAGACCTCCGTTCCACTATCTAAAGAGATGTTGGAAGCTGAGAAGT 1075 Query 1086 CAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGTCG 1145 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1076 CAAAGCTCTACCTCCATAGAATCCCTTGCAATGTCCCATATGAAGAGTTAAATGGAGTTG 1135 Query 1146 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGACCGTCACTACTATA 1205 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1136 TTTCCAGGGATATCCCACATGAAGTTAAGCCGTCGAAAAAACAAGATCGTCACTACTATA 1195 Query 1206 GCGCGATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1265 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GCGCAATTGTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAACATTGCTG 1255 Query 1266 GAGACTTTGGAAAGGATTCGAGGGGGTTGTCACAAAAACAGATCTTTCTAGAGCCGAGTT 1325 ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 1256 GAGACTTGGGAAAGGATTCGACGGGGTTGTCACAAAAACAGGTCTTTCTAGAGCCGAGTT 1315 Query 1326 CATCAGAACCTAGATTATATGTTCTCGTTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1385 |||||| ||||||| | || | ||| ||||||||||||||||||||||||||||||||| Sbjct 1316 CATCAGGGCCTAGAT-ACAT-T-CTCATTCGTAAAATGGTCGAAGATGATTTGGTTGGGG 1372 Query 1386 AAGTCA-TAGCAGAGGAGAATAATGCGAGTTCTAAGAAACGGAAGAGAGAAAATCATTCT 1444 ||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1373 AAGTCTCT-GCAGAGGAGAAGAATGCGAGTTCTAAGAAACGGAAGAGAGAAAAAGATTCT 1431 Query 1445 AAAGGGACCAGAGATAGACGCAGGTGTAAACCATTGTCC-AGAC-GAAAACAGAGAAGCA 1502 |||| ||||||||| |||||||| |||||||||||| | ||| |||| ||||||||| Sbjct 1432 AAAGAGACCAGAGAGAGACGCAGATGTAAACCATTG-CGTAGAAAGAAA-CAGAGAAGCT 1489 Query 1503 ATGTCAAACGAAGAAGATAATATCAA-GGAAAATCAAGAACTCAAAGCA 1550 |||| || |||||| ||||| ||| ||||||||||||||| |||||| Sbjct 1490 ATGTGAACCGAAGA---TAATA-CAAAGGAAAATCAAGAACTGAAAGCA 1534 > Ahg323586 jgi|Araly1|323586|fgenesh1_pm.C_scaffold_5001130 Length=1230 Score = 320 bits (173), Expect = 2e-86 Identities = 547/721 (76%), Gaps = 52/721 (7%) Strand=Plus/Plus Query 555 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTT-GTTAGAGTTG-CTGC 612 ||||||||||||||||||||||||||||||||| ||| | | || |||||||||| | || Sbjct 428 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGT-TTAGTTAGAGTTGGC-GC 485 Query 613 AGTTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGG-TTG 671 || ||||||||||||||||||||||||||||| |||||||||||| | ||| | ||| Sbjct 486 TGTAGACCGTGATTTAAAGGTGATTCTTGATGAATTTGTGAAACCGGA-CAAACATATTG 544 Query 672 TTGACTATAGGACTTTCATTACTGG-ACTTACTGCTCAAGATCTTGAAAAGGCTACTA-T 729 ||||||||||||| |||||| || | |||||||| ||||| | ||||| ||||| | | Sbjct 545 TTGACTATAGGACAGACATTACAGGGA-TTACTGCTGAAGATATCGAAAATGCTAC-ACT 602 Query 730 ATCTGTGGTAGATATACAGGAAAAATTGCTGATGTTTATCTCTGA-GGATACAATTTTGG 788 ||||||| |||||||||||||| |||| | ||| | ||| | || ||| ||||||| Sbjct 603 CTCTGTGGCAGATATACAGGAAACGTTGCAGCCCTTTCTTTCT-ACGGGTACGATTTTGG 661 Query 789 TTGGTCAAAGTTTGAACC-ATGATCTAAAAGTATTGAAGGTGGATCATGCCAGAGTAATT 847 | ||||| ||||||||| | ||| | |||| |||||| | |||||| ||| |||||| Sbjct 662 TAGGTCACAGTTTGAACAGA-GATTTGGAAGTGTTGAAGATAGATCATCCCAAAGTAATC 720 Query 848 GATACTTCACTTGTGTTTAAGTATAACTATGACGGTACAAGAAGGCCTTTAAGACTTAAA 907 || ||| ||||||| || | |||| | || || || | ||| | || | || | Sbjct 721 GACACTGCACTTGTATTCAGGTATTCCAAT-AC---ACGA-AAG-C-TT-A-GA---A-- 766 Query 908 AGACCTTCT-TTGAATTATCTGTGCAAGTGTATATTGGGATATGAAGTGCAGAAAGAA-G 965 ||||||| || || | || ||||||| ||| ||||| || ||||| | |||||| | Sbjct 767 -GACCTTCACTT-AACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCC-GAAAGACCG 823 Query 966 GTGTTCCACACAATTGTGTTCATGATGCAGAAGCTGCAATGAAACTTGTACTTGCTATAC 1025 | ||||| || ||||||| || || ||||||||||| |||||||||| ||||||| | Sbjct 824 GCGTTCCTCATGATTGTGTACACGACGCAGAAGCTGCGATGAAACTTGCACTTGCTGTTG 883 Query 1026 TAGATAATGGAGCAGAGACCTCCGTTCCA-CTATCTAAAGAGATGTTGGAAGCTGAGAA- 1083 |||| || ||| || || | | | | | |||||||||||||||||| | |||||| Sbjct 884 TAGAGAAAAGAGTTGACACAACAAT-CAAACCATCTAAAGAGATGTTGGAGGTTGAGAAA 942 Query 1084 GTCAAAGCTCTACCTTCATAGAATCCCTTGCAATGTTCCATATGAAGAGTTAAATGGAGT 1143 | |||| |||| || |||| ||||||| |||||| |||| ||||||| | | ||| Sbjct 943 G-CAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTGGACCAAGT 1001 Query 1144 -CGTTTCCAGGGA--TATCCCACATGAAGTTAAGCC-GTCGAAAAAACAAG-ACCGTCAC 1198 | | || || | | | | || ||| || |||| | |||||| ||| | || || || Sbjct 1002 TC-TCTCT-GGAAAGTTTAC-ACTTGATGTGAAGCAAG-CGAAAACACAGGGACGGT-AC 1056 Query 1199 TACTATAGCGCGATT-GTTGTTTTTAAAAGTCCAGAAGAAGCAAATCAAGCATTTGAAAA 1257 || | | | || ||| ||||||||| ||| ||||||| ||| |||||||||||||||| Sbjct 1057 TA-T-T-GTGC-ATTTGTTGTTTTTGGTAGTTCAGAAGACGCAGATCAAGCATTTGAAAA 1112 Query 1258 C 1258 | Sbjct 1113 C 1113 > Ahg940302 jgi|Araly1|940302|scaffold_600846.1 Length=524 Score = 198 bits (107), Expect = 1e-49 Identities = 148/167 (89%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 555 TTGATTGTGAGATGGTTCTTTGTGAAGATGGGAGTGAAGCTGTTGTTAGAGTTGCTGCAG 614 ||| ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| Sbjct 195 TTG-TTGTGAGATGGTTCTTTGTGATGATGGGAGTGAAGCTGTTGTCAGAGTTTCTGCAG 253 Query 615 TTGACCGTGATTTAAAGGTGATTCTTGATGAGTTTGTGAAACCGAATCAACCGGTTGT-T 673 |||||||||||||||||||||||||||| || ||||||||||||||| |||| ||| | | Sbjct 254 TTGACCGTGATTTAAAGGTGATTCTTGACGAATTTGTGAAACCGAATAAACCAGTT-TCT 312 Query 674 GACTATAGGACTT-TCATTACTGGACTTACTGCTCAAGATCTTGAAA 719 ||||| || || | |||| || |||||||||||||||||||||| Sbjct 313 GACTACAGAACCGATG-TTACCGGGCTTACTGCTCAAGATCTTGAAA 358 Score = 65.8 bits (35), Expect = 1e-09 Identities = 41/44 (93%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 828 TGGATCATGCCAGAGTAATTGATACTTCACTTGTGTTTAAGTAT 871 |||||||||| ||| |||||||||||||||||||||||||||| Sbjct 392 TGGATCATGCAAGAAAAATTGATACTTCACTTGTGTTTAAGTAT 435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63839250620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5