BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05710.1 Length=625 Score E Sequences producing significant alignments: (Bits) Value Ahg487373 jgi|Araly1|487373|fgenesh2_kg.6__507__AT5G05710.1 797 0.0 Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268 593 4e-169 > Ahg487373 jgi|Araly1|487373|fgenesh2_kg.6__507__AT5G05710.1 Length=542 Score = 797 bits (431), Expect = 0.0 Identities = 497/528 (94%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 9 TTTCGATAGCATCGGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCTTCGGAAG 68 ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2 TTTCGATAGCATCCGCAGATTTGGATCAAAACCCTAATTCTCCAGTTCAATCGTCGGAA- 60 Query 69 ATGGCAAGCCTGTGGCGAGCAGTAATCGGCGGTCAGAACAACAATTCCGAAGACTACGGA 128 |||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||| Sbjct 61 ATGGCAAGCCTGTGGCGAGCTGTACTCGGCGGTCAGAGCAACAATTCCGACGACTACGGA 120 Query 129 GGCGTAGAGTTCTGGTCAAACCCAGAACGAACCGGCTGGCTCACGAAACAAGGAGAGTAC 188 ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 121 GGCGTAGAGTTCTGGTCCAACCCTGAACGAACCGGCTGGCTCACGAAACAGGGAGAGTAC 180 Query 189 ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCAAGACTTGGCGACGCCGATGGTTCGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAA 240 Query 249 GACTCCGACGTCACGCGTGTGTCACGCCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTA 308 ||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||| Sbjct 241 GACTCCGACGTCACGCGCGTCTCACGCCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTA 300 Query 309 ACCGCTAAAGGAGCAGAGGATGTACTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA 368 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 ACCGCCAAAGGAGCAGAGGATGTCCTCAACAAGCAAAACGCGTTCGAGCTATCGACGAGA 360 Query 369 AATGAGACTATGTACTTCATTGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC 428 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATGAGACTATGTACTTCATCGCTGATTCGGAGAAGGAGAAAGAAGATTGGATCAATTCC 420 Query 429 ATTGGACGTTCCATCGTGCAAAACTCCAGATCCGTTACCGATTCTGAGATCGTTGATTAC 488 |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 421 ATTGGACGGTCCATCGTGCAGAACTCCAGATCTGTTACCGATTCTGAGATCGTCGATTAC 480 Query 489 GATAACAAACACTAAA----G-TTTCTCTGTTTTTGTCTTTTGTCAAA 531 |||||||||||||| | |||||||||||||||||||||| ||| Sbjct 481 GATAACAAACACTAGTTCTTGATTTCTCTGTTTTTGTCTTTTGT-AAA 527 > Ahg336703 jgi|Araly1|336703|fgenesh1_pg.C_scaffold_1003268 Length=492 Score = 593 bits (321), Expect = 4e-169 Identities = 361/381 (95%), Gaps = 0/381 (0%) Strand=Plus/Plus Query 95 CGGCGGTCAGAACAACAATTCCGAAGACTACGGAGGCGTAGAGTTCTGGTCAAACCCAGA 154 ||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 12 CGGCGGTCAGAGCAACAATTCCGACGACTACGGAGGCGTAGAGTTCTGGTCCAACCCAGA 71 Query 155 ACGAACCGGCTGGCTCACGAAACAAGGAGAGTACATCAAGACTTGGCGACGCCGATGGTT 214 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 72 ACGAACCGGATGGCTCACGAAACAGGGAGAGTACATCAAGACTTGGCGACGCCGCTGGTT 131 Query 215 CGTGCTCAAACAAGGGAAACTCTTCTGGTTCAAAGACTCCGACGTCACGCGTGTGTCACG 274 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 132 CGTGCTCAAACAAGGGAAGCTCTTCTGGTTCAAAGACTCCGACGTCACGCGCGTCTCACG 191 Query 275 CCCTCGCGGTGTCGTCCCCGTAGAATCGTGCTTAACCGCTAAAGGAGCAGAGGATGTACT 334 ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| || Sbjct 192 CCCTCGCGGTGTCGTCCCCGTCGCGTCGTGCTTAACCGCCAAAGGAGCGGAGGATGTCCT 251 Query 335 CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAAATGAGACTATGTACTTCATTGCTGA 394 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 252 CAACAAGCAAAACGCGTTCGAGCTATCGACGAGAGATGAGACTATGTACTTCATCGCTGA 311 Query 395 TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGTTCCATCGTGCAAAACTC 454 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 312 TTCGGAGAAGGAGAAAGAAGATTGGATCAATTCCATTGGACGGTCCATCGTGCAGAACTC 371 Query 455 CAGATCCGTTACCGATTCTGA 475 |||||| |||||||||||||| Sbjct 372 CAGATCTGTTACCGATTCTGA 392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22873750200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5