BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G05740.1
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487375 jgi|Araly1|487375|fgenesh2_kg.6__509__AT5G05740.1 2837 0.0
> Ahg487375 jgi|Araly1|487375|fgenesh2_kg.6__509__AT5G05740.1
Length=1797
Score = 2837 bits (1536), Expect = 0.0
Identities = 1714/1799 (95%), Gaps = 15/1799 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGCGTCTTGTCGCAATGCAGCTCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGAGTCTTGTCGCAATGCAGCTCA 60
Query 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCCAGTCTCAATTTTGGGCAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCGAGTCTCAGTTTTGGGCAA 120
Query 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGCTTGAAAGAGTTTTCAGAAAGAGAGAG 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGATTGAAAGAGTTTTCAGAAAGAGAGAG 180
Query 181 ACTTTGGTTAGAGTGACGGAGACGCAAACGGAACCAGAAGGCAATGATGATGAGGATAAT 240
||||||||||||||||||||||||||||| ||||||||||||||| | || |||||||||
Sbjct 181 ACTTTGGTTAGAGTGACGGAGACGCAAACAGAACCAGAAGGCAATAACGACGAGGATAAT 240
Query 241 -A-----AAGAAGGCAAAGAGAGC-TCTGCAGATGATCCTCCTACAAAAATTCCTACTGA 293
| ||||||||||||||| | || ||||||||||| |||||| |||||||||||||
Sbjct 241 AATGGTGAAGAAGGCAAAGAGA-CTTCAGCAGATGATCCACCTACACAAATTCCTACTGA 299
Query 294 GTTGAATTCACAGTCAACGGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGAATTCACAGTCAACAGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 359
Query 354 TCAGTTCAGTTCTCAGGACGGTGATAAATTAGAAGTTAGCAGTGGTTCTCCTCTTCCTGG 413
|||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 360 TCAGTTCAATTCTCAGGACGGTGATAAATTAGAAATTAGCAGCGGTTCTCCTCTTCCTGG 419
Query 414 TGTGAATGTAAGTATTATCATCCATGTTATTTACAAAGACGACAGCATAATGTTTTCTGG 473
|||||||||||||||||||| | |||||| ||||||| ||||||| ||||| ||||||
Sbjct 420 TGTGAATGTAAGTATTATCAACAATGTTAAATACAAAGGCGACAGCTTAATGCTTTCTGT 479
Query 474 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTGGACGATTCCATGAG 533
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 480 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTTGATGATTCTATGAG 539
Query 534 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTTGGATTTGACACCTTCTT 593
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 540 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTCGGGTTTGACACCTTCTT 599
Query 594 CGTAACAAGCCAAGAACCATATGAGGGTGGGGTATTGTTCAAAGGAAATCTAAGAGGCAA 653
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| |
Sbjct 600 CGTAACAAGTCAAGAACCATACGAGGGTGGGGTATTGTTCAAAGGAAACCTAAGGGGCGA 659
Query 654 GCCTGCTACAAGTTACGAGAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 713
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCCTGCTAAAAGTTACGAAAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 719
Query 714 CAAGCTTTTCCTTCTCACGAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 773
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAAGCTTTTCCTCCTCTCCAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 779
Query 774 AAGGTCCTTAGAACCCGAGACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 833
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGGTCCTTAGAACCCGAAACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 839
Query 834 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCTGCCTTGCAATCCGACTTACT 893
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCCGCCTTGCAATCCGACTTACT 899
Query 894 ATCGGCCTTTGACAACCTTGAACTGTTAAAAGATGGCTTACCAGGAGCTCTTGTCACCGC 953
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 900 ATCGGCATTTGACAACCTTGAACTGTTGAAAGATGGCTTACCGGGAGCTCTTGTCACCGC 959
Query 954 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGAATAAA 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGGATAAA 1019
Query 1014 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1079
Query 1074 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTTGCAGCTGCAGGACCTTT 1133
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTCGCAGCTGCAGGACCTTT 1139
Query 1134 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTATAGGGTTATTCGTGCCTCCCAGTGA 1193
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1140 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTCTAGGGTTGTTCGTGCCTCCTAGTGA 1199
Query 1194 CGGCATTGGCGTTGTAGTTGATGCATCAGTGTTTCACGAGTCCTTCCTTGCTGGTGGTAT 1253
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 CGGCATTGGCGTTGTAGTTGACGCATCAGTGTTTCACGAATCCTTCCTTGCTGGTGGTAT 1259
Query 1254 TGCAAAGCTCCTACTAGGTGATGCACTCAAAGAAGGAACTTCAATATCTCTTAACCCACT 1313
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1260 TGCAAAGCTCTTACTAGGTGATGCACTCAAAGAAGGAACTTCATTATCTCTTAACCCACT 1319
Query 1314 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGTATCCCTGCGGGGGA 1373
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1320 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGCATCCCTGCAGGGGA 1379
Query 1374 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGAAGAAAGACCGCAACACGGCTCAC 1433
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1380 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGTAGAAAGACCGCAACACGGCTCAC 1439
Query 1434 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGCGACGTGGCATTCTACTG 1493
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1440 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGTGACGTGGCATTCTACTG 1499
Query 1494 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCGCCGCTGGCTGAAGAAATCAC 1553
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1500 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCACCGCTGGCTGAAGAAATCAC 1559
Query 1554 GGTGCCTGATGATAAGTATGTGTCTCTTGGAATCCTGGTTTTGTTTCTCTCCTTGCTTGT 1613
|| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1560 GGCACCTGATGATAAGTATGTGTCTCTAGGAATCCTGGTTCTGTTCCTCTCCTTGCTTGT 1619
Query 1614 GTGTTTGCCTTACCCATTTGCTTTCACGGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1673
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 GTGTTTGCCTTACCCATTTGCTTTCACCGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1679
Query 1674 TGACTCATATCATTACACCGCACAATAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1733
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAGTCATATCATTACACAGCTCAGTAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1739
Query 1734 TGGTCTCTA--T---GCTCTACT-TTGACATCTAAAGTTATGTTTTTGTTCTTGCTCTA 1786
||||||||| | | |||||| || |||||| |||||||||||||||||||| ||||
Sbjct 1740 TGGTCTCTAAGTTATGTTCTACTATT-ACATCTTAAGTTATGTTTTTGTTCTTGTTCTA 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69781328840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5