BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G05760.1 Length=1347 Score E Sequences producing significant alignments: (Bits) Value Ahg487377 jgi|Araly1|487377|fgenesh2_kg.6__511__AT5G05760.1 1712 0.0 > Ahg487377 jgi|Araly1|487377|fgenesh2_kg.6__511__AT5G05760.1 Length=1077 Score = 1712 bits (927), Expect = 0.0 Identities = 1029/1079 (95%), Gaps = 4/1079 (0%) Strand=Plus/Plus Query 82 AATTTGCCGGTGACTTTAG-TTCAATTCCGACCCTCCGATGGGCTCGACGTTCAGAGATC 140 ||||||||||||| ||| | | ||| || |||||| ||||||||||||||||||| |||| Sbjct 1 AATTTGCCGGTGA-TTTTGATCCAAGTCTGACCCTACGATGGGCTCGACGTTCAGGGATC 59 Query 141 GGACGGTGGAGCTTCATTCACTGTCCCAAACATTGAAGAAGATCGGGGCAATCCCGTCCG 200 ||||||||||| |||||||| |||||||||| |||| ||||||||| || |||||||||| Sbjct 60 GGACGGTGGAGTTTCATTCATTGTCCCAAACGTTGAGGAAGATCGGAGCGATCCCGTCCG 119 Query 201 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 179 Query 261 ATAAGAAGGCTTCCCGGATCGGGTTAGGTATTAAAGAAACGTCACAGAAGATCACGAGGC 320 |||||||||||||||||||||||||||| || | |||||||| ||||||||| |||||| Sbjct 180 ATAAGAAGGCTTCCCGGATCGGGTTAGGAATCCACGAAACGTCTCAGAAGATCGCGAGGC 239 Query 321 TCGCTAAATTGGCAAAACAATCGACGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 380 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 240 TCGCTAAATTGGCAAAACAATCGTCGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 299 Query 381 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 359 Query 441 CCCTTCAGAACATGGAGCTTGCTGATGGGAACTATTCACAGGACCAAGTTGGTCATTACA 500 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| Sbjct 360 CCCTTCAGAACATGGAGATTGCTGATGGGAACTATTCACAGGACAAAGTTGGTCACTACA 419 Query 501 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACTAAGCAGCTTCAAGATG 560 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 420 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACAAAGCAACTTCAAGATG 479 Query 561 TTCTAACTACGAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 620 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TTCTAACTACAAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 539 Query 621 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATGCAAAATCTGTACCTGAGCCTCCTC 680 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 540 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATACAAAATCTGTACCTGAGCCTCCTC 599 Query 681 CTTGGTCAAGTTCATCAAATCCTTTCGGGAATTTACAACAACCACTATTACCTCCATTAA 740 |||||||||||||||||||||||| || ||||||||||||||||||||| || |||||| Sbjct 600 CTTGGTCAAGTTCATCAAATCCTTCCGAGAATTTACAACAACCACTATTGCCGCCATTAC 659 Query 741 ATACTGGAGCTCCGCCAGGTAGCCAGCTCAGACGCAGATCCGCGATCGAGAATGCTCCTT 800 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 660 ATACTGGAGCTCCTCCAGGTAGCCAGCTCAGACGCAGATCTGCGATCGAGAATGCTCCTT 719 Query 801 CACAGCAAATGGAGATGTCCTTGTTGCAGCAAACAGTCCCAAAGCAGGAGAACTATAGCC 860 |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| Sbjct 720 CACAGCAAATGGAGATGTCCATGTTGCAGCAAACAGTCCCAAGGCAGGAGAACTACAGCC 779 Query 861 AAAGTCGAGCGGTTGCACTTCACAGTGTTGAATCAAGAATAACAGAGCTCAGTGGAATAT 920 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 780 AAAGCCGAGCGGTTGCACTTCACAGTGTTGAATCAACAATAACAGAGCTCAGTGGAATAT 839 Query 921 TCCCGCAGCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATCGATGACA 980 || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 840 TCACGCATCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATTGATGACA 899 Query 981 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGTAGCGCTCTTCTGCAGCATCTCA 1040 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 900 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGCAGCGCTCTTCTGCAGCATCTCA 959 Query 1041 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1019 Query 1101 TGATTGT-TTTCCTCTTCTTTGTGGCTTAAAACAATACCATTTTATCTCTTGTTCCTGG 1158 | ||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||||||| Sbjct 1020 TCATTGTCTTTC-TCTTCTTTGTGGCTTGAAACAATGCCATTTAATCTCTTGTTCCTGG 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50398496274 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5